-
1
-
-
0037146606
-
Breakthrough of the year: Small RNA make big splash
-
J. Couzin, "Breakthrough Of The Year: Small RNA Make Big Splash," Science, vol. 298, no. 5602, pp. 2296-2297, 2002.
-
(2002)
Science
, vol.298
, Issue.5602
, pp. 2296-2297
-
-
Couzin, J.1
-
3
-
-
0034637161
-
The structural basis of ribosome activity in peptide bond synthesis
-
P. Nissen, J. Hansen, N. Ban, P. B. Moore, and T. A. Steitz, "The Structural Basis of Ribosome Activity in Peptide Bond Synthesis," Science, vol. 289, no. 5481, pp. 920-930, 2000.
-
(2000)
Science
, vol.289
, Issue.5481
, pp. 920-930
-
-
Nissen, P.1
Hansen, J.2
Ban, N.3
Moore, P.B.4
Steitz, T.A.5
-
4
-
-
0037062949
-
The chemical repertoire of natural ribozymes
-
J. A. Doudna and T. R. Cech, "The chemical repertoire of natural ribozymes," Nature, vol. 418, pp. 222-228, 2002.
-
(2002)
Nature
, vol.418
, pp. 222-228
-
-
Doudna, J.A.1
Cech, T.R.2
-
5
-
-
0037015037
-
Structural insights into peptide bond formation
-
J. L. Hansen, T. M. Schmeing, P. B. Moore, and T. A. Steitz, "Structural insights into peptide bond formation," Proceedings of the National Academy of Sciences, vol. 99, no. 18, pp. 11670-11675, 2002.
-
(2002)
Proceedings of the National Academy of Sciences
, vol.99
, Issue.18
, pp. 11670-11675
-
-
Hansen, J.L.1
Schmeing, T.M.2
Moore, P.B.3
Steitz, T.A.4
-
6
-
-
0036703184
-
The expanding snorna world
-
August
-
J.-P. Bachellerie, J. Cavaille, and A. Huttenhofer, "The expanding snorna world," Biochimie, vol. 84, pp. 775-790(16), August 2002.
-
(2002)
Biochimie
, vol.84
, Issue.16
, pp. 775-790
-
-
Bachellerie, J.-P.1
Cavaille, J.2
Huttenhofer, A.3
-
7
-
-
4644223259
-
Mechanisms of gene silencing by doublestranded RNA
-
G. Meister and T. Tuschl, "Mechanisms of gene silencing by doublestranded RNA ," Nature, vol. 431, pp. 343-349, 2004.
-
(2004)
Nature
, vol.431
, pp. 343-349
-
-
Meister, G.1
Tuschl, T.2
-
8
-
-
0019964240
-
Signal recognition particle contains a 7S RNA essential for protein translocation across the endoplasmic reticulum
-
P. Walter and G. Blobel, "Signal recognition particle contains a 7S RNA essential for protein translocation across the endoplasmic reticulum ," Nature, vol. 299, pp. 691-698, 1982.
-
(1982)
Nature
, vol.299
, pp. 691-698
-
-
Walter, P.1
Blobel, G.2
-
9
-
-
0345281589
-
How RNA folds
-
I. Tinoco Jr. and C. Bustamante, "How RNA folds," Journal of Molecular Biology, vol. 293, no. 1, pp. 271-281, 1999.
-
(1999)
Journal of Molecular Biology
, vol.293
, Issue.1
, pp. 271-281
-
-
Tinoco Jr., I.1
Bustamante, C.2
-
10
-
-
33748257118
-
Predicting RNA secondary structure by free energy minimization
-
D. H. Mathews, "Predicting RNA secondary structure by free energy minimization," Theoretical Chemistry Accounts: Theory, Computation, and Modeling, vol. 116, no. 1-3, pp. 160-168, 2006.
-
(2006)
Theoretical Chemistry Accounts: Theory, Computation, and Modeling
, vol.116
, Issue.1-3
, pp. 160-168
-
-
Mathews, D.H.1
-
11
-
-
0039577307
-
Analysis of RNA sequence structure maps by exhaustive enumeration. II. structures of neutral networks and shape space covering
-
sFI preprint 95-10-099
-
W. Gruener, R. Giegerich, D. Strothmann, C. Reidys, J. Weber, I. L. Hofacker, P. F. Stadler, and P. Schuster, "Analysis of RNA sequence structure maps by exhaustive enumeration. II. structures of neutral networks and shape space covering," Monath. Chem., vol. 127, pp. 375-389, 1996, sFI preprint 95-10-099.
-
(1996)
Monath. Chem.
, vol.127
, pp. 375-389
-
-
Gruener, W.1
Giegerich, R.2
Strothmann, D.3
Reidys, C.4
Weber, J.5
Hofacker, I.L.6
Stadler, P.F.7
Schuster, P.8
-
12
-
-
0036600570
-
The accuracy of ribosomal RNA comparative structure models
-
June
-
R. R. Gutell, J. C. Lee, and J. J. Cannone, "The accuracy of ribosomal RNA comparative structure models." Curr Opin Struct Biol, vol. 12, no. 3, pp. 301-310, June 2002.
-
(2002)
Curr Opin Struct Biol
, vol.12
, Issue.3
, pp. 301-310
-
-
Gutell, R.R.1
Lee, J.C.2
Cannone, J.J.3
-
13
-
-
27544437866
-
Structure clustering features on the Sfold web server
-
C. Y. Chan, Y. Ding, and C. E. Lawrence, "Structure clustering features on the Sfold web server," Bioinformatics, vol. 21, no. 20, pp. 3926-3928, 2005.
-
(2005)
Bioinformatics
, vol.21
, Issue.20
, pp. 3926-3928
-
-
Chan, C.Y.1
Ding, Y.2
Lawrence, C.E.3
-
14
-
-
14044272835
-
From the Cover: Fast and reliable prediction of noncoding RNAs
-
S. Washietl, I. L. Hofacker, and P. F. Stadler, "From The Cover: Fast and reliable prediction of noncoding RNAs," Proceedings of the National Academy of Sciences, vol. 102, no. 7, pp. 2454-2459, 2005.
-
(2005)
Proceedings of the National Academy of Sciences
, vol.102
, Issue.7
, pp. 2454-2459
-
-
Washietl, S.1
Hofacker, I.L.2
Stadler, P.F.3
-
15
-
-
0015216137
-
Estimation of secondary structure in ribonucleic acids
-
I. Tinoco, O. C. Uhlenbeck, and M. D. Levine, "Estimation of secondary structure in ribonucleic acids," Nature, vol. 230, pp. 362-267, 1971.
-
(1971)
Nature
, vol.230
, pp. 362-267
-
-
Tinoco, I.1
Uhlenbeck, O.C.2
Levine, M.D.3
-
16
-
-
33746320475
-
Revolutions in RNA secondary structure prediction
-
D. H. Mathews, "Revolutions in RNA secondary structure prediction," Journal of Molecular Biology, vol. 359, pp. 526-532, 2006.
-
(2006)
Journal of Molecular Biology
, vol.359
, pp. 526-532
-
-
Mathews, D.H.1
-
17
-
-
0019876473
-
Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information
-
M. Zuker and P. Stiegler, "Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information," Nucl. Acids. Res., vol. 9, no. 1, pp. 133-148, 1981.
-
(1981)
Nucl. Acids. Res.
, vol.9
, Issue.1
, pp. 133-148
-
-
Zuker, M.1
Stiegler, P.2
-
18
-
-
0042121256
-
Mfold web server for nucleic acid folding and hybridization prediction
-
M. Zuker, "Mfold web server for nucleic acid folding and hybridization prediction," Nucleic Acids Research, vol. 31, no. 13, pp. 3406-3415, 2003.
-
(2003)
Nucleic Acids Research
, vol.31
, Issue.13
, pp. 3406-3415
-
-
Zuker, M.1
-
19
-
-
8344234215
-
How do RNA folding algorithms works?
-
S. R. Eddy, "How do RNA folding algorithms works?" Nature Biotechnology, vol. 22, no. 11, pp. 1457-1458, 2004.
-
(2004)
Nature Biotechnology
, vol.22
, Issue.11
, pp. 1457-1458
-
-
Eddy, S.R.1
-
20
-
-
33744524010
-
Beyond Mfold: Recent advances in RNA bioinformatics
-
J. Reeder, M. Höschsmann, M. Rehmsmeier, B. Voß, and R. Giegerich, "Beyond Mfold: recent advances in RNA bioinformatics," Journal of Biotechnology, vol. 124, no. 1, pp. 41-55, 2006.
-
(2006)
Journal of Biotechnology
, vol.124
, Issue.1
, pp. 41-55
-
-
Reeder, J.1
Höschsmann, M.2
Rehmsmeier, M.3
Voß, B.4
Giegerich, R.5
-
21
-
-
0029975949
-
Description of RNA folding by simulated annealing
-
M. Schmitz and G. Steger, "Description of RNA folding by simulated annealing," Journal of Molecular Biology, vol. 255, no. 1, pp. 254-266, 1996.
-
(1996)
Journal of Molecular Biology
, vol.255
, Issue.1
, pp. 254-266
-
-
Schmitz, M.1
Steger, G.2
-
24
-
-
5744249209
-
Equation of state calculations by fast computing machines
-
N. Metropolis, A. Rosenbluth, M. Rosenbluth, A. Teller, and E. Teller, "Equation of state calculations by fast computing machines," Journal of Chem. Phys., vol. 21, no. 6, pp. 1087-1092, 1953.
-
(1953)
Journal of Chem. Phys.
, vol.21
, Issue.6
, pp. 1087-1092
-
-
Metropolis, N.1
Rosenbluth, A.2
Rosenbluth, M.3
Teller, A.4
Teller, E.5
-
25
-
-
26444479778
-
Optimization by simulated annealing
-
13 May, 4598, 1983
-
S. Kirkpatrick, C. D. Gelatt, and M. P. Vecchi, "Optimization by simulated annealing," Science, Number 4598, 13 May 1983, vol. 220, 4598, pp. 671-680, 1983.
-
(1983)
Science
, vol.220
, Issue.4598
, pp. 671-680
-
-
Kirkpatrick, S.1
Gelatt, C.D.2
Vecchi, M.P.3
-
26
-
-
0032552882
-
Thermodynamic parameters for an expanded nearest-neighbor model for formation of RNA duplexes with Watson-Crick base pairs
-
T. Xia, J. S. Jr., M. E. Burkard, R. Kierzek, S. J. Schroeder, X. Jiao, C. Cox, and D. H. Turner, "Thermodynamic parameters for an expanded nearest-neighbor model for formation of RNA duplexes with Watson-Crick base pairs," Biochemistry, vol. 37, pp. 14719-14735, 1998.
-
(1998)
Biochemistry
, vol.37
, pp. 14719-14735
-
-
Xia Jr., T.J.S.1
Burkard, M.E.2
Kierzek, R.3
Schroeder, S.J.4
Jiao, X.5
Cox, C.6
Turner, D.H.7
-
27
-
-
0033591465
-
Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure
-
D. H. Mathews, J. Sabina, M. Zuker, and D. H. Turner, "Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure," Journal of Molecular Biology, vol. 288, no. 5, pp. 911-940, 1999.
-
(1999)
Journal of Molecular Biology
, vol.288
, Issue.5
, pp. 911-940
-
-
Mathews, D.H.1
Sabina, J.2
Zuker, M.3
Turner, D.H.4
-
28
-
-
4344701951
-
Using stacking-energies (INN and INN-HB) for improving the accuracy of RNA secondary structure prediction with an evolutionary algorithm - A comparison to known structures
-
Portland, Oregon: IEEE Press, 20-23 June
-
A. Deschênes and K. C. Wiese, "Using stacking-energies (INN and INN-HB) for improving the accuracy of RNA secondary structure prediction with an evolutionary algorithm - a comparison to known structures," in Proceedings of the 2004 IEEE Congress on Evolutionary Computation. Portland, Oregon: IEEE Press, 20-23 June 2004, pp. 598-606.
-
(2004)
Proceedings of the 2004 IEEE Congress on Evolutionary Computation
, pp. 598-606
-
-
Deschênes, A.1
Wiese, K.C.2
-
29
-
-
0028000994
-
Coaxial stacking of helixes enhances binding of oligoribonucleotides and improves predictions of RNA folding
-
A. Walter, D. Turner, J. Kim, M. Lyttle, P. Muller, D. Mathews, and M. Zuker, "Coaxial Stacking of Helixes Enhances Binding of Oligoribonucleotides and Improves Predictions of RNA Folding," PNAS, vol. 91, no. 20, pp. 9218-9222, 1994. [Online]. Available: http://www.pnas.org/cgi/ content/abstract/91/20/9218
-
(1994)
PNAS
, vol.91
, Issue.20
, pp. 9218-9222
-
-
Walter, A.1
Turner, D.2
Kim, J.3
Lyttle, M.4
Muller, P.5
Mathews, D.6
Zuker, M.7
-
30
-
-
3843114319
-
Intramolecular reaction in polycondensations. I. The theory of linear systems
-
H. Jacobson and W. H. Stockmayer, "Intramolecular reaction in polycondensations. I. The theory of linear systems," The Journal of Chemical Physics, vol. 18, pp. 1600-1606, 1950.
-
(1950)
The Journal of Chemical Physics
, vol.18
, pp. 1600-1606
-
-
Jacobson, H.1
Stockmayer, W.H.2
-
31
-
-
2942571539
-
The comparative RNA web (CRW) site: An online database of comparative sequence and structure information for ribosomal, intron, and other RNAs: Correction
-
J. Cannone, S. Subramanian, M. Schnare, J. Collett, L. D'Souza, Y. Du, B. Feng, N. Lin, L. Madabusi, K. Muller, N. Pande, Z. Shang, N. Yu, and R. Gutell, "The comparative RNA web (CRW) site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs: Correction," BMC Bioinformatics, vol. 3, no. 1, p. 15, 2002.
-
(2002)
BMC Bioinformatics
, vol.3
, Issue.1
, pp. 15
-
-
Cannone, J.1
Subramanian, S.2
Schnare, M.3
Collett, J.4
D'souza, L.5
Du, Y.6
Feng, B.7
Lin, N.8
Madabusi, L.9
Muller, K.10
Pande, N.11
Shang, Z.12
Yu, N.13
Gutell, R.14
-
32
-
-
0033931867
-
Assessing the accuracy of prediction algorithms for classification: An overview
-
P. Baldi, S. Brunak, Y. Chauvin, C. A. F. Andersen, and H. Nielsen, "Assessing the accuracy of prediction algorithms for classification: an overview," Bioinformatics, vol. 16, no. 5, pp. 412-424, 2000.
-
(2000)
Bioinformatics
, vol.16
, Issue.5
, pp. 412-424
-
-
Baldi, P.1
Brunak, S.2
Chauvin, Y.3
Andersen, C.A.F.4
Nielsen, H.5
|