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Volumn 2, Issue 3, 2009, Pages 139-149

Phylogenetic profiles reveal structural and functional determinants of lipid-binding

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EID: 75649136598     PISSN: None     EISSN: 0974276X     Source Type: Journal    
DOI: 10.4172/jpb.1000071     Document Type: Article
Times cited : (11)

References (30)
  • 1
    • 0037423777 scopus 로고    scopus 로고
    • Support vector machines for prediction of protein domain structural class
    • Cai YD, Liu XJ, Xu XB, Chou KC (2003) Support vector machines for prediction of protein domain structural class. J Theor Biol 221: 115-120.
    • (2003) J Theor Biol , vol.221 , pp. 115-120
    • Cai, Y.D.1    Liu, X.J.2    Xu, X.B.3    Chou, K.C.4
  • 2
    • 33749646106 scopus 로고    scopus 로고
    • Action of TFII-I outside the nucleus as an inhibitor of agonist-induced calcium entry
    • Caraveo G, van Rossum DB, Patterson RL, Snyder SH, Desiderio S (2006) Action of TFII-I outside the nucleus as an inhibitor of agonist-induced calcium entry. Science 314: 122-125.
    • (2006) Science , vol.314 , pp. 122-125
    • Caraveo, G.1    van Rossum, D.B.2    Patterson, R.L.3    Snyder, S.H.4    Desiderio, S.5
  • 4
    • 51649096656 scopus 로고    scopus 로고
    • Phylogenetic profiles reveal evolutionary relationships within the "twilight zone" of sequence similarity
    • USA
    • Chang GS, Hong Y, Ko KD, Bhardwaj G, Holmes EC, et al. (2008) Phylogenetic profiles reveal evolutionary relationships within the "twilight zone" of sequence similarity. Proc Natl Acad Sci USA 105: 13474-13479.
    • (2008) Proc Natl Acad Sci , vol.105 , pp. 13474-13479
    • Chang, G.S.1    Hong, Y.2    Ko, K.D.3    Bhardwaj, G.4    Holmes, E.C.5
  • 5
    • 34447630272 scopus 로고    scopus 로고
    • An improved method for identifying functionally linked proteins using phylogenetic profiles
    • Cokus S, Mizutani S, Pellegrini M (2007) An improved method for identifying functionally linked proteins using phylogenetic profiles. BMC Bioinformatics 4: S7.
    • (2007) BMC Bioinformatics , vol.4
    • Cokus, S.1    Mizutani, S.2    Pellegrini, M.3
  • 6
    • 0034622674 scopus 로고    scopus 로고
    • GAP1IP4BP contains a novel group I pleckstrin homology domain that directs constitutive plasma membrane association
    • Cozier GE, Lockyer PJ, Reynolds JS, Kupzig S, Bottomley JR, et al. (2000) GAP1IP4BP contains a novel group I pleckstrin homology domain that directs constitutive plasma membrane association. J Biol Chem 275: 28261-28268.
    • (2000) J Biol Chem , vol.275 , pp. 28261-28268
    • Cozier, G.E.1    Lockyer, P.J.2    Reynolds, J.S.3    Kupzig, S.4    Bottomley, J.R.5
  • 7
    • 0032810062 scopus 로고    scopus 로고
    • Family pairwise search with embedded motif models
    • Grundy WN, Bailey TL (1999) Family pairwise search with embedded motif models. Bioinformatics 15: 463-470.
    • (1999) Bioinformatics , vol.15 , pp. 463-470
    • Grundy, W.N.1    Bailey, T.L.2
  • 9
    • 0030941114 scopus 로고    scopus 로고
    • Embedding strategies for effective use of information from multiple sequence alignments
    • Henikoff S, Henikoff JG (1997) Embedding strategies for effective use of information from multiple sequence alignments. Protein Sci 6: 698-705.
    • (1997) Protein Sci , vol.6 , pp. 698-705
    • Henikoff, S.1    Henikoff, J.G.2
  • 10
    • 33644845048 scopus 로고    scopus 로고
    • Locally defined protein phylogenetic profiles reveal previously missed protein interactions and functional relationships
    • Kim Y, Subramaniam S (2006) Locally defined protein phylogenetic profiles reveal previously missed protein interactions and functional relationships. Proteins 62: 1115-1124.
    • (2006) Proteins , vol.62 , pp. 1115-1124
    • Kim, Y.1    Subramaniam, S.2
  • 11
    • 67349182301 scopus 로고    scopus 로고
    • Phylogenetic Profiles as a Unified Framework for Measuring Protein Structure, Function and Evolution
    • arXiv:0806.239, qbio. Q
    • Ko KD, Hong Y, Chang GS, Bhardwaj G, van Rossum DB, et al. (2008) Phylogenetic Profiles as a Unified Framework for Measuring Protein Structure, Function and Evolution. Physics Archives arXiv:0806.239, qbio. Q.
    • (2008) Physics Archives
    • Ko, K.D.1    Hong, Y.2    Chang, G.S.3    Bhardwaj, G.4    van Rossum, D.B.5
  • 13
    • 33645515889 scopus 로고    scopus 로고
    • Prediction of the functional class of lipid binding proteins from sequence-derived properties irrespective of sequence similarity
    • Lin HH, Han LY, Zhang HL, Zheng CJ, Xie B, et al. (2006) Prediction of the functional class of lipid binding proteins from sequence-derived properties irrespective of sequence similarity. J Lipid Res 47: 824-831.
    • (2006) J Lipid Res , vol.47 , pp. 824-831
    • Lin, H.H.1    Han, L.Y.2    Zhang, H.L.3    Zheng, C.J.4    Xie, B.5
  • 14
    • 12844283323 scopus 로고    scopus 로고
    • The SH2 domain: Versatile signaling module and pharmaceutical target
    • Machida K, Mayer BJ (2005) The SH2 domain: versatile signaling module and pharmaceutical target. Biochim Biophys Acta 1747: 1-25.
    • (2005) Biochim Biophys Acta , vol.1747 , pp. 1-25
    • Machida, K.1    Mayer, B.J.2
  • 16
    • 36549003965 scopus 로고    scopus 로고
    • InterPro and InterProScan: Tools for protein sequence classification and comparison
    • Mulder N, Apweiler R (2007) InterPro and InterProScan: tools for protein sequence classification and comparison. Methods Mol Biol 396: 59-70.
    • (2007) Methods Mol Biol , vol.396 , pp. 59-70
    • Mulder, N.1    Apweiler, R.2
  • 19
  • 20
    • 40449119359 scopus 로고    scopus 로고
    • Naturally occurring Bruton's tyrosine kinase mutations have no dominant negative effect in an Xlinked agammaglobulinaemia cellular model
    • Perez de DR, Lopez GE, Rivera J, Ferreira A, Fontan G, et al. (2008) Naturally occurring Bruton's tyrosine kinase mutations have no dominant negative effect in an Xlinked agammaglobulinaemia cellular model. Clin Exp Immunol 152: 33-38.
    • (2008) Clin Exp Immunol , vol.152 , pp. 33-38
    • de Perez, D.R.1    Lopez, G.E.2    Rivera, J.3    Ferreira, A.4    Fontan, G.5
  • 21
    • 0028892253 scopus 로고
    • Phosphatidylinositol (3,4,5)P3 interacts with SH2 domains and modulates PI 3-kinase association with tyrosinephosphorylated proteins
    • Rameh LE, Chen CS, Cantley LC (1995) Phosphatidylinositol (3,4,5)P3 interacts with SH2 domains and modulates PI 3-kinase association with tyrosinephosphorylated proteins. Cell 83: 821-830.
    • (1995) Cell , vol.83 , pp. 821-830
    • Rameh, L.E.1    Chen, C.S.2    Cantley, L.C.3
  • 22
    • 36949020644 scopus 로고    scopus 로고
    • Predicting protein function with hierarchical phylogenetic profiles: The Gene3D Phylo-Tuner method applied to eukaryotic genomes
    • Ranea JA, Yeats C, Grant A, Orengo CA (2007) Predicting protein function with hierarchical phylogenetic profiles: the Gene3D Phylo-Tuner method applied to eukaryotic genomes. PLoS Comput Biol 3: e237.
    • (2007) PLoS Comput Biol , vol.3
    • Ranea, J.A.1    Yeats, C.2    Grant, A.3    Orengo, C.A.4
  • 24
    • 0019496312 scopus 로고
    • Overlapping genes and information theory
    • Smith TF, Waterman MS (1981) Overlapping genes and information theory. J Theor Biol 91: 379-380.
    • (1981) J Theor Biol , vol.91 , pp. 379-380
    • Smith, T.F.1    Waterman, M.S.2
  • 25
    • 0030925920 scopus 로고    scopus 로고
    • Pfam: A comprehensive database of protein domain families based on seed alignments
    • Sonnhammer EL, Eddy SR, Durbin R (1997) Pfam: a comprehensive database of protein domain families based on seed alignments. Proteins 28: 405-420.
    • (1997) Proteins , vol.28 , pp. 405-420
    • Sonnhammer, E.L.1    Eddy, S.R.2    Durbin, R.3
  • 26
  • 27
    • 33750973379 scopus 로고    scopus 로고
    • BTKbase: The mutation database for X-linked agammaglobulinemia
    • Valiaho J, Smith CI, Vihinen M (2006) BTKbase: the mutation database for X-linked agammaglobulinemia. Hum Mutat 27: 1209-1217.
    • (2006) Hum Mutat , vol.27 , pp. 1209-1217
    • Valiaho, J.1    Smith, C.I.2    Vihinen, M.3
  • 28
    • 57749121597 scopus 로고    scopus 로고
    • TRP_2, a Lipid/Trafficking Domain That Mediates Diacylglycerol-induced Vesicle Fusion
    • van Rossum DB, Oberdick D, Rbaibi Y, Bhardwaj G, Barrow RK, et al. (2008) TRP_2, a Lipid/Trafficking Domain That Mediates Diacylglycerol-induced Vesicle Fusion. J Biol Chem 283: 34384-34392.
    • (2008) J Biol Chem , vol.283 , pp. 34384-34392
    • van Rossum, D.B.1    Oberdick, D.2    Rbaibi, Y.3    Bhardwaj, G.4    Barrow, R.K.5
  • 29
    • 14544307864 scopus 로고    scopus 로고
    • Phospholipase Cgamma1 controls surface expression of TRPC3 through an intermolecular PH domain
    • van Rossum DB, Patterson RL, Sharma S, Barrow RK, Kornberg M, et al. (2005) Phospholipase Cgamma1 controls surface expression of TRPC3 through an intermolecular PH domain. Nature 434: 99-104.
    • (2005) Nature , vol.434 , pp. 99-104
    • van Rossum, D.B.1    Patterson, R.L.2    Sharma, S.3    Barrow, R.K.4    Kornberg, M.5
  • 30
    • 0035860499 scopus 로고    scopus 로고
    • Global analysis of protein activities using proteome chips
    • Zhu H, Bilgin M, Bangham R, Hall D, Casamayor A, et al. (2001) Global analysis of protein activities using proteome chips. Science 293: 2101-2105.
    • (2001) Science , vol.293 , pp. 2101-2105
    • Zhu, H.1    Bilgin, M.2    Bangham, R.3    Hall, D.4    Casamayor, A.5


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