-
1
-
-
0025183708
-
Basic local alignment search tool
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. 1990. Basic local alignment search tool. J Mol Biol 215:403-410.
-
(1990)
J Mol Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
2
-
-
0024988375
-
Protein database searches for multiple alignments
-
Altschul SF, Lipman DJ. 1990. Protein database searches for multiple alignments. Proc Natl Acad Sci USA 87:5509-5513.
-
(1990)
Proc Natl Acad Sci USA
, vol.87
, pp. 5509-5513
-
-
Altschul, S.F.1
Lipman, D.J.2
-
3
-
-
0028246722
-
PRINTS - A protein motif fingerprint database
-
Attwood TK, Beck ME. 1994. PRINTS - A protein motif fingerprint database. Protein Eng 7:841-848.
-
(1994)
Protein Eng
, vol.7
, pp. 841-848
-
-
Attwood, T.K.1
Beck, M.E.2
-
5
-
-
0026553672
-
PROSITE: A dictionary of sites and patterns in proteins
-
Bairoch A. 1992. PROSITE: A dictionary of sites and patterns in proteins. Nucleic Acids Res 20:2013-2018.
-
(1992)
Nucleic Acids Res
, vol.20
, pp. 2013-2018
-
-
Bairoch, A.1
-
6
-
-
0026562263
-
The SWISS-PROT protein sequence data bank
-
Bairoch A, Boeckmann B. 1992. The SWISS-PROT protein sequence data bank. Nucleic Acids Res 20:2019-2022.
-
(1992)
Nucleic Acids Res
, vol.20
, pp. 2019-2022
-
-
Bairoch, A.1
Boeckmann, B.2
-
8
-
-
0027903113
-
Using Dirichlet mixture priors to derive hidden Markov models for protein families
-
Hunter L, Searls D, Shavlik J, eds. Washington: AAAI Press
-
Brown MP, Hughey R, Krogh A, Mian IS, Sjolander K, Haussler D. 1993. Using Dirichlet mixture priors to derive hidden Markov models for protein families. In: Hunter L, Searls D, Shavlik J, eds. Proceedings First International Conference on Intelligent Systems for Molecular Biology. Washington: AAAI Press. pp 47-55.
-
(1993)
Proceedings First International Conference on Intelligent Systems for Molecular Biology
, pp. 47-55
-
-
Brown, M.P.1
Hughey, R.2
Krogh, A.3
Mian, I.S.4
Sjolander, K.5
Haussler, D.6
-
9
-
-
0029116947
-
Protein splicing: Self-splicing of genetically mobile elements at the proteins level
-
Cooper AA, Stevens TH. 1995. Protein splicing: Self-splicing of genetically mobile elements at the proteins level. Trends Biochem Sci 20:351-356.
-
(1995)
Trends Biochem Sci
, vol.20
, pp. 351-356
-
-
Cooper, A.A.1
Stevens, T.H.2
-
10
-
-
0029937428
-
Hidden Markov models
-
Eddy SR. 1996. Hidden Markov models. Curr Opin Struct Biol 6:361-365.
-
(1996)
Curr Opin Struct Biol
, vol.6
, pp. 361-365
-
-
Eddy, S.R.1
-
13
-
-
0029665409
-
Identification of sequence patterns with profile analysis
-
Gribskov M, Veretnik S. 1996. Identification of sequence patterns with profile analysis. Methods Enzymol 266:198-212.
-
(1996)
Methods Enzymol
, vol.266
, pp. 198-212
-
-
Gribskov, M.1
Veretnik, S.2
-
14
-
-
0029977162
-
Using substitution probabilities to improve position-specific scoring matrices
-
Henikoff JG, Henikoff S. 1996. Using substitution probabilities to improve position-specific scoring matrices. CABIOS 12:135-143.
-
(1996)
CABIOS
, vol.12
, pp. 135-143
-
-
Henikoff, J.G.1
Henikoff, S.2
-
15
-
-
0029418365
-
Comparative methods for identifying functional domains in protein sequences
-
El-Gewely RM, ed. Amsterdam: Elsevier
-
Henikoff S. 1995. Comparative methods for identifying functional domains in protein sequences. In: El-Gewely RM, ed. Biotechnology Annual Review, vol 1. Amsterdam: Elsevier. pp 129-147.
-
(1995)
Biotechnology Annual Review
, vol.1
, pp. 129-147
-
-
Henikoff, S.1
-
17
-
-
0026410103
-
Automated assembly of protein blocks for database searching
-
Henikoff S, Henikoff JG. 1991. Automated assembly of protein blocks for database searching. Nucleic Acids Res 19:6565-6572.
-
(1991)
Nucleic Acids Res
, vol.19
, pp. 6565-6572
-
-
Henikoff, S.1
Henikoff, J.G.2
-
18
-
-
0026458378
-
Amino acid substitution matrices from protein blocks
-
Henikoff S, Henikoff JG. 1992. Amino acid substitution matrices from protein blocks. Proc Natl Acad Sci USA 89:10915-10919.
-
(1992)
Proc Natl Acad Sci USA
, vol.89
, pp. 10915-10919
-
-
Henikoff, S.1
Henikoff, J.G.2
-
19
-
-
0027317580
-
Performance evaluation of amino acid substitution matrices
-
Henikoff S, Henikoff JG. 1993. Performance evaluation of amino acid substitution matrices. Proteins Struct Funct Genet 17:49-61.
-
(1993)
Proteins Struct Funct Genet
, vol.17
, pp. 49-61
-
-
Henikoff, S.1
Henikoff, J.G.2
-
20
-
-
0028043552
-
Position-based sequence weights
-
Henikoff S, Henikoff JG. 1994. Position-based sequence weights. J Mol Biol 243:574-578.
-
(1994)
J Mol Biol
, vol.243
, pp. 574-578
-
-
Henikoff, S.1
Henikoff, J.G.2
-
21
-
-
0028825276
-
Automated construction and graphical presentation of protein blocks from unaligned sequences
-
Henikoff S, Henikoff JG, Alford WJ, Pietrokovski S. 1995. Automated construction and graphical presentation of protein blocks from unaligned sequences. Gene 163:GC17-GC26.
-
(1995)
Gene
, vol.163
-
-
Henikoff, S.1
Henikoff, J.G.2
Alford, W.J.3
Pietrokovski, S.4
-
22
-
-
0025371704
-
Finding protein similarities with nucleotide sequence databases
-
Henikoff S, Wallace JC, Brown JP. 1990. Finding protein similarities with nucleotide sequence databases. Methods Enzymol 183:111-132.
-
(1990)
Methods Enzymol
, vol.183
, pp. 111-132
-
-
Henikoff, S.1
Wallace, J.C.2
Brown, J.P.3
-
23
-
-
0028181441
-
Hidden Markov models in computational biology
-
Krogh A, Brown M, Mian IS, Sjolander K, Haussler D. 1994. Hidden Markov models in computational biology. J Mol Biol 235:1501-1531.
-
(1994)
J Mol Biol
, vol.235
, pp. 1501-1531
-
-
Krogh, A.1
Brown, M.2
Mian, I.S.3
Sjolander, K.4
Haussler, D.5
-
24
-
-
0028158905
-
Improving the sensitivity of the sequence profile method
-
Luthy R, Xenarios I, Bucher P. 1994. Improving the sensitivity of the sequence profile method. Protein Sci 3:139-146.
-
(1994)
Protein Sci
, vol.3
, pp. 139-146
-
-
Luthy, R.1
Xenarios, I.2
Bucher, P.3
-
25
-
-
0028270992
-
Detecting patterns in protein sequences
-
Neuwald AF, Green P. 1994. Detecting patterns in protein sequences. J Mol Biol 239:698-712.
-
(1994)
J Mol Biol
, vol.239
, pp. 698-712
-
-
Neuwald, A.F.1
Green, P.2
-
26
-
-
0029059785
-
Bacterial genome sequence bagged
-
Nowak R. 1995. Bacterial genome sequence bagged. Science 269:468-470.
-
(1995)
Science
, vol.269
, pp. 468-470
-
-
Nowak, R.1
-
27
-
-
0023576317
-
Detecting homology of distantly related proteins with consensus sequences
-
Patthy L. 1987. Detecting homology of distantly related proteins with consensus sequences. J Mol Biol 198:567-577.
-
(1987)
J Mol Biol
, vol.198
, pp. 567-577
-
-
Patthy, L.1
-
28
-
-
0025272240
-
Rapid and sensitive sequence comparison with FASTP and FASTA
-
Pearson WR. 1990. Rapid and sensitive sequence comparison with FASTP and FASTA. Methods Enzymol 183:63-98.
-
(1990)
Methods Enzymol
, vol.183
, pp. 63-98
-
-
Pearson, W.R.1
-
29
-
-
0029006770
-
Comparison of methods for searching protein sequence databases
-
Pearson WR. 1995. Comparison of methods for searching protein sequence databases. Protein Sci 4:1145-1160.
-
(1995)
Protein Sci
, vol.4
, pp. 1145-1160
-
-
Pearson, W.R.1
-
30
-
-
0028607524
-
Conserved sequence features of inteins (protein introns) and their use in identifying new inteins and related proteins
-
Pietrokovski S. 1994. Conserved sequence features of inteins (protein introns) and their use in identifying new inteins and related proteins. Protein Sci 3:2340-2350.
-
(1994)
Protein Sci
, vol.3
, pp. 2340-2350
-
-
Pietrokovski, S.1
-
31
-
-
0029789461
-
Searching databases of conserved sequence regions by aligning protein multiple-alignments
-
Pietrokovski S. 1996. Searching databases of conserved sequence regions by aligning protein multiple-alignments. Nucleic Acids Res 24:3836-3845.
-
(1996)
Nucleic Acids Res
, vol.24
, pp. 3836-3845
-
-
Pietrokovski, S.1
-
33
-
-
0029906607
-
Dirichlet mixtures: A method for improved detection of weak but significant protein sequence homology
-
Sjolander K, Karplus K, Brown M, Hughey R, Krogh A, Mian IS, Haussler D. 1996. Dirichlet mixtures: A method for improved detection of weak but significant protein sequence homology. CABIOS 12:327-345.
-
(1996)
CABIOS
, vol.12
, pp. 327-345
-
-
Sjolander, K.1
Karplus, K.2
Brown, M.3
Hughey, R.4
Krogh, A.5
Mian, I.S.6
Haussler, D.7
-
34
-
-
0025141443
-
Automatic generation of primary sequence patterns from sets of related protein sequences
-
Smith RF, Smith TF. 1990. Automatic generation of primary sequence patterns from sets of related protein sequences. Proc Natl Acad Sci USA 87:118-122.
-
(1990)
Proc Natl Acad Sci USA
, vol.87
, pp. 118-122
-
-
Smith, R.F.1
Smith, T.F.2
-
35
-
-
0019887799
-
Identification of common molecular subsequences
-
Smith TF, Waterman MS. 1981. Identification of common molecular subsequences. J Mol Biol 147:195-197.
-
(1981)
J Mol Biol
, vol.147
, pp. 195-197
-
-
Smith, T.F.1
Waterman, M.S.2
-
36
-
-
0028218683
-
Modular arrangement of proteins as inferred from analysis of homology
-
Sonnhammer ELL, Kahn D. 1994. Modular arrangement of proteins as inferred from analysis of homology. Protein Sci 3:482-492.
-
(1994)
Protein Sci
, vol.3
, pp. 482-492
-
-
Sonnhammer, E.L.L.1
Kahn, D.2
-
37
-
-
0028091659
-
Detection of conserved segments in proteins: Iterative scanning of sequence databases with alignment blocks
-
Tatusov RL, Altschul SF, Koonin EV. 1994. Detection of conserved segments in proteins: Iterative scanning of sequence databases with alignment blocks. Proc Natl Acad Sci USA 91:12091-12095.
-
(1994)
Proc Natl Acad Sci USA
, vol.91
, pp. 12091-12095
-
-
Tatusov, R.L.1
Altschul, S.F.2
Koonin, E.V.3
-
38
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson JD, Higgins DG, Gibson TJ. 1994a. CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673-4680.
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
39
-
-
0028013177
-
Improved sensitivity of profile searches through the use of sequence weights and gap excision
-
Thompson JD, Higgins DG, Gibson TJ. 1994b. Improved sensitivity of profile searches through the use of sequence weights and gap excision. CABIOS 10:19-29.
-
(1994)
CABIOS
, vol.10
, pp. 19-29
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
40
-
-
0026747032
-
PATMAT: A searching and extraction program for sequence, pattern, and block queries and databases
-
Wallace JC, Henikoff S. 1992. PATMAT: A searching and extraction program for sequence, pattern, and block queries and databases. CABIOS 8:249-254.
-
(1992)
CABIOS
, vol.8
, pp. 249-254
-
-
Wallace, J.C.1
Henikoff, S.2
-
41
-
-
0028835212
-
BEAUTY: An enhanced BLAST-based search tool that integrates multiple biological information resources into sequence similarity search results
-
Worley KC, Wiese BA, Smith RF. 1995. BEAUTY: An enhanced BLAST-based search tool that integrates multiple biological information resources into sequence similarity search results. Genome Res 5:173-184.
-
(1995)
Genome Res
, vol.5
, pp. 173-184
-
-
Worley, K.C.1
Wiese, B.A.2
Smith, R.F.3
-
42
-
-
0029933832
-
Motif identification neural design for rapid and sensitive protein family search
-
Wu CH, Zhao S, Chen HL, Lo CJ, McLarty J. 1996. Motif identification neural design for rapid and sensitive protein family search. CABIOS 12:109-118.
-
(1996)
CABIOS
, vol.12
, pp. 109-118
-
-
Wu, C.H.1
Zhao, S.2
Chen, H.L.3
Lo, C.J.4
McLarty, J.5
-
43
-
-
0027994453
-
Recognition of related proteins by iterative template refinement (ITR)
-
Yi TM, Lander ES. 1994. Recognition of related proteins by iterative template refinement (ITR). Protein Sci 3:1315-1328.
-
(1994)
Protein Sci
, vol.3
, pp. 1315-1328
-
-
Yi, T.M.1
Lander, E.S.2
|