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Volumn 48, Issue 2, 2010, Pages 412-418

Multilocus variable-number tandem-repeat analysis and multilocus sequence typing reveal genetic relationships among Clostridium difficile isolates genotyped by restriction endonuclease analysis

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BACTERIAL GENE; BACTERIAL STRAIN; CLOSTRIDIUM DIFFICILE; GENETIC ANALYSIS; GENETIC VARIABILITY; GENOTYPE; MULTILOCUS SEQUENCE TYPING; MULTILOCUS VARIABLE NUMBER TANDEM REPEAT ANALYSIS; NONHUMAN; PHYLOGENY; PRIORITY JOURNAL; RESTRICTION MAPPING; TCDC GENE;

EID: 75649095225     PISSN: 00951137     EISSN: None     Source Type: Journal    
DOI: 10.1128/JCM.01315-09     Document Type: Article
Times cited : (41)

References (39)
  • 1
    • 48749126211 scopus 로고    scopus 로고
    • Different ribotypes in community-acquired Clostridium difficile
    • Bignardi, G. E., and C. Settle. 2008. Different ribotypes in community-acquired Clostridium difficile. J. Hosp. Infect. 70:96-98.
    • (2008) J. Hosp. Infect , vol.70 , pp. 96-98
    • Bignardi, G.E.1    Settle, C.2
  • 2
    • 61749094898 scopus 로고    scopus 로고
    • Increased number of Clostridium difficile infections and prevalence of Clostridium difficile PCR ribotype 001 in southern Germany. Euro Surveill
    • Borgmann, S., M. Kist, T. Jakobiak, M. Reil, E. Scholz, C. von Eichel-Streiber, H. Gruber, J. S. Brazier, and B. Schulte. 2008. Increased number of Clostridium difficile infections and prevalence of Clostridium difficile PCR ribotype 001 in southern Germany. Euro Surveill. 13:pii19057.
    • (2008) pii19057 , vol.13
    • Borgmann, S.1    Kist, M.2    Jakobiak, T.3    Reil, M.4    Scholz, E.5    von Eichel-Streiber, C.6    Gruber, H.7    Brazier, J.S.8    Schulte, B.9
  • 3
    • 55849145460 scopus 로고    scopus 로고
    • Genetic relatedness of Clostridium difficile isolates from various origins determined by triple-locus sequence analysis based on toxin regulatory genes tcdC, tcdR, and cdtR
    • Bouvet, P. J., and M. R. Popoff. 2008. Genetic relatedness of Clostridium difficile isolates from various origins determined by triple-locus sequence analysis based on toxin regulatory genes tcdC, tcdR, and cdtR. J. Clin. Microbiol. 46:3703-3713.
    • (2008) J. Clin. Microbiol , vol.46 , pp. 3703-3713
    • Bouvet, P.J.1    Popoff, M.R.2
  • 4
    • 0001506104 scopus 로고    scopus 로고
    • Brownstein, M. J., J. D. Carpten, and J. R. Smith. 1996. Modulation of non-templated nucleotide addition by Taq DNA polymerase: primer modifications that facilitate genotyping. Biotechniques 20:1004-1006, 1008-1010.
    • Brownstein, M. J., J. D. Carpten, and J. R. Smith. 1996. Modulation of non-templated nucleotide addition by Taq DNA polymerase: primer modifications that facilitate genotyping. Biotechniques 20:1004-1006, 1008-1010.
  • 6
    • 32544446901 scopus 로고    scopus 로고
    • Severe Clostridium difficile-associated disease in populations previously at low risk - four states, 2005
    • Centers for Disease Control and Prevention
    • Centers for Disease Control and Prevention. 2005. Severe Clostridium difficile-associated disease in populations previously at low risk - four states, 2005. MMWR Morb. Mortal. Wkly. Rep. 54:1201-1205.
    • (2005) MMWR Morb. Mortal. Wkly. Rep , vol.54 , pp. 1201-1205
  • 7
    • 41649114003 scopus 로고    scopus 로고
    • Surveillance for community-associated Clostridium difficile - Connecticut, 2006
    • Centers for Disease Control and Prevention
    • Centers for Disease Control and Prevention. 2008. Surveillance for community-associated Clostridium difficile - Connecticut, 2006. MMWR Morb. Mortal. Wkly. Rep. 57:340-343.
    • (2008) MMWR Morb. Mortal. Wkly. Rep , vol.57 , pp. 340-343
  • 8
    • 0027288261 scopus 로고
    • Development of a rapid and efficient restriction endonuclease analysis typing system for Clostridium difficile and correlation with other typing systems
    • Clabots, C. R., S. Johnson, K. M. Bettin, P. A. Mathie, M. E. Mulligan, D. R. Schaberg, L. R. Peterson, and D. N. Gerding. 1993. Development of a rapid and efficient restriction endonuclease analysis typing system for Clostridium difficile and correlation with other typing systems. J. Clin. Microbiol. 31: 1870-1875.
    • (1993) J. Clin. Microbiol , vol.31 , pp. 1870-1875
    • Clabots, C.R.1    Johnson, S.2    Bettin, K.M.3    Mathie, P.A.4    Mulligan, M.E.5    Schaberg, D.R.6    Peterson, L.R.7    Gerding, D.N.8
  • 9
    • 33846253977 scopus 로고    scopus 로고
    • tcdC genotypes associated with severe TcdC truncation in an epidemic clone and other strains of Clostridium difficile
    • Curry, S. R., J. W. Marsh, C. A. Muto, M. M. O'Leary, A. W. Pasculle, and L. H. Harrison. 2007. tcdC genotypes associated with severe TcdC truncation in an epidemic clone and other strains of Clostridium difficile. J. Clin. Microbiol. 45:215-221.
    • (2007) J. Clin. Microbiol , vol.45 , pp. 215-221
    • Curry, S.R.1    Marsh, J.W.2    Muto, C.A.3    O'Leary, M.M.4    Pasculle, A.W.5    Harrison, L.H.6
  • 10
    • 40749132179 scopus 로고    scopus 로고
    • Use of highly discriminatory fingerprinting to analyze clusters of Clostridium difficile infection cases due to epidemic ribotype 027 strains
    • Fawley, W. N., J. Freeman, C. Smith, C. Harmanus, R. J. van den Berg, E. J. Kuijper, and M. H. Wilcox. 2008. Use of highly discriminatory fingerprinting to analyze clusters of Clostridium difficile infection cases due to epidemic ribotype 027 strains. J. Clin. Microbiol. 46:954-960.
    • (2008) J. Clin. Microbiol , vol.46 , pp. 954-960
    • Fawley, W.N.1    Freeman, J.2    Smith, C.3    Harmanus, C.4    van den Berg, R.J.5    Kuijper, E.J.6    Wilcox, M.H.7
  • 11
    • 1342304133 scopus 로고    scopus 로고
    • eBURST: Inferring patterns of evolutionary descent among clusters of related bacterial genotypes from multilocus sequence typing data
    • Feil, E. J., B. C. Li, D. M. Aanensen, W. P. Hanage, and B. G. Spratt. 2004. eBURST: inferring patterns of evolutionary descent among clusters of related bacterial genotypes from multilocus sequence typing data. J. Bacteriol. 186:1518-1530.
    • (2004) J. Bacteriol , vol.186 , pp. 1518-1530
    • Feil, E.J.1    Li, B.C.2    Aanensen, D.M.3    Hanage, W.P.4    Spratt, B.G.5
  • 12
    • 0242509106 scopus 로고    scopus 로고
    • Frequency of binary toxin genes among Clostridium difficile strains that do not produce large clostridial toxins
    • Geric, B., S. Johnson, D. N. Gerding, M. Grabnar, and M. Rupnik. 2003. Frequency of binary toxin genes among Clostridium difficile strains that do not produce large clostridial toxins. J. Clin. Microbiol. 41:5227-5232.
    • (2003) J. Clin. Microbiol , vol.41 , pp. 5227-5232
    • Geric, B.1    Johnson, S.2    Gerding, D.N.3    Grabnar, M.4    Rupnik, M.5
  • 14
    • 58449110302 scopus 로고    scopus 로고
    • Community acquired Clostridium difficile infection due to a moxifloxacin susceptible ribotype 027 strain
    • Huang, H., A. Weintraub, H. Fang, and C. E. Nord. 2009. Community acquired Clostridium difficile infection due to a moxifloxacin susceptible ribotype 027 strain. Scand. J. Infect. Dis. 41:158-159.
    • (2009) Scand. J. Infect. Dis , vol.41 , pp. 158-159
    • Huang, H.1    Weintraub, A.2    Fang, H.3    Nord, C.E.4
  • 15
    • 0023738045 scopus 로고
    • Numerical index of the discriminatory ability of typing systems: An application of Simpson's index of diversity
    • Hunter, P. R., and M. A. Gaston. 1988. Numerical index of the discriminatory ability of typing systems: an application of Simpson's index of diversity. J. Clin. Microbiol. 26:2465-2466.
    • (1988) J. Clin. Microbiol , vol.26 , pp. 2465-2466
    • Hunter, P.R.1    Gaston, M.A.2
  • 18
    • 34248174250 scopus 로고    scopus 로고
    • Kato, H., Y. Ito, R. J. van den Berg, E. J. Kuijper, and Y. Arakawa. 2007. First isolation of Clostridium difficile 027 in Japan. Euro Surveill. 12: E070111-E070113.
    • Kato, H., Y. Ito, R. J. van den Berg, E. J. Kuijper, and Y. Arakawa. 2007. First isolation of Clostridium difficile 027 in Japan. Euro Surveill. 12: E070111-E070113.
  • 19
    • 34250660545 scopus 로고    scopus 로고
    • Prevalence of PCR ribotypes among Clostridium difficile isolates from pigs, calves, and other species
    • Keel, K., J. S. Brazier, K. W. Post, S. Weese, and J. G. Songer. 2007. Prevalence of PCR ribotypes among Clostridium difficile isolates from pigs, calves, and other species. J. Clin. Microbiol. 45:1963-1964.
    • (2007) J. Clin. Microbiol , vol.45 , pp. 1963-1964
    • Keel, K.1    Brazier, J.S.2    Post, K.W.3    Weese, S.4    Songer, J.G.5
  • 20
    • 38949178833 scopus 로고    scopus 로고
    • Killgore, G., A. Thompson, S. Johnson, J. Brazier, E. Kuijper, J. Pepin, E. H. Frost, P. Savelkoul, B. Nicholson, R. J. van den Berg, H. Kato, S. P. Sambol, W. Zukowski, C. Woods, B. Limbago, D. N. Gerding, and L. C. McDonald. 2008. Comparison of seven techniques for typing international epidemic strains of Clostridium difficile: restriction endonuclease analysis, pulsed-field gel electrophoresis, PCR-ribotyping, multilocus sequence typing, multilocus variable-number tandem-repeat analysis, amplified fragment length polymorphism, and surface layer protein A gene sequence typing. J. Clin. Microbiol. 46:431-437.
    • Killgore, G., A. Thompson, S. Johnson, J. Brazier, E. Kuijper, J. Pepin, E. H. Frost, P. Savelkoul, B. Nicholson, R. J. van den Berg, H. Kato, S. P. Sambol, W. Zukowski, C. Woods, B. Limbago, D. N. Gerding, and L. C. McDonald. 2008. Comparison of seven techniques for typing international epidemic strains of Clostridium difficile: restriction endonuclease analysis, pulsed-field gel electrophoresis, PCR-ribotyping, multilocus sequence typing, multilocus variable-number tandem-repeat analysis, amplified fragment length polymorphism, and surface layer protein A gene sequence typing. J. Clin. Microbiol. 46:431-437.
  • 21
    • 62249088494 scopus 로고    scopus 로고
    • Kuijper, E. J., F. Barbut, J. S. Brazier, N. Kleinkauf, T. Eckmanns, M. L. Lambert, D. Drudy, F. Fitzpatrick, C. Wiuff, D. J. Brown, J. E. Coia, H. Pituch, P. Reichert, J. Even, J. Mossong, A. F. Widmer, K. E. Olsen, F. Allerberger, D. W. Notermans, M. Delmee, B. Coignard, M. Wilcox, B. Patel, R. Frei, E. Nagy, E. Bouza, M. Marin, T. Akerlund, A. Virolainen-Julkunen, O. Lyytikainen, S. Kotila, A. Ingebretsen, B. Smyth, P. Rooney, I. R. Poxton, and D. L. Monnet. 2008. Update of Clostridium difficile infection due to PCR ribotype 027 in Europe, 2008. Euro Surveill. 13:pii18942.
    • Kuijper, E. J., F. Barbut, J. S. Brazier, N. Kleinkauf, T. Eckmanns, M. L. Lambert, D. Drudy, F. Fitzpatrick, C. Wiuff, D. J. Brown, J. E. Coia, H. Pituch, P. Reichert, J. Even, J. Mossong, A. F. Widmer, K. E. Olsen, F. Allerberger, D. W. Notermans, M. Delmee, B. Coignard, M. Wilcox, B. Patel, R. Frei, E. Nagy, E. Bouza, M. Marin, T. Akerlund, A. Virolainen-Julkunen, O. Lyytikainen, S. Kotila, A. Ingebretsen, B. Smyth, P. Rooney, I. R. Poxton, and D. L. Monnet. 2008. Update of Clostridium difficile infection due to PCR ribotype 027 in Europe, 2008. Euro Surveill. 13:pii18942.
  • 22
    • 33748563622 scopus 로고    scopus 로고
    • Emergence of Clostridium difficile-associated disease in North America and Europe
    • Kuijper, E. J., B. Coignard, and P. Tull. 2006. Emergence of Clostridium difficile-associated disease in North America and Europe. Clin. Microbiol. Infect. 12(Suppl. 6):2-18.
    • (2006) Clin. Microbiol. Infect , vol.12 , Issue.SUPPL. 6 , pp. 2-18
    • Kuijper, E.J.1    Coignard, B.2    Tull, P.3
  • 23
    • 2942594170 scopus 로고    scopus 로고
    • Multilocus sequence typing analysis of human and animal Clostridium difficile isolates of various toxigenic types
    • Lemee, L., A. Dhalluin, M. Pestel-Caron, J. F. Lemeland, and J. L. Pons. 2004. Multilocus sequence typing analysis of human and animal Clostridium difficile isolates of various toxigenic types. J. Clin. Microbiol. 42:2609-2617.
    • (2004) J. Clin. Microbiol , vol.42 , pp. 2609-2617
    • Lemee, L.1    Dhalluin, A.2    Pestel-Caron, M.3    Lemeland, J.F.4    Pons, J.L.5
  • 29
    • 4444382260 scopus 로고    scopus 로고
    • Clostridium difficile-associated diarrhea in a region of Quebec from 1991 to 2003: A changing pattern of disease severity
    • Pepin, J., L. Valiquette, M. E. Alary, P. Villemure, A. Pelletier, K. Forget, K. Pepin, and D. Chouinard. 2004. Clostridium difficile-associated diarrhea in a region of Quebec from 1991 to 2003: a changing pattern of disease severity. CMAJ 171:466-472.
    • (2004) CMAJ , vol.171 , pp. 466-472
    • Pepin, J.1    Valiquette, L.2    Alary, M.E.3    Villemure, P.4    Pelletier, A.5    Forget, K.6    Pepin, K.7    Chouinard, D.8
  • 30
    • 58149200162 scopus 로고    scopus 로고
    • A confidence interval for the Wallace coefficient of concordance and its application to microbial typing methods
    • Pinto, F. R., J. Melo-Cristino, and M. Ramirez. 2008. A confidence interval for the Wallace coefficient of concordance and its application to microbial typing methods. PLoS One 3:e3696.
    • (2008) PLoS One , vol.3
    • Pinto, F.R.1    Melo-Cristino, J.2    Ramirez, M.3
  • 32
    • 42149172381 scopus 로고    scopus 로고
    • Heterogeneity of large clostridial toxins: Importance of Clostridium difficile toxinotypes
    • Rupnik, M. 2008. Heterogeneity of large clostridial toxins: importance of Clostridium difficile toxinotypes. FEMS Microbiol. Rev. 32:541-555.
    • (2008) FEMS Microbiol. Rev , vol.32 , pp. 541-555
    • Rupnik, M.1
  • 33
    • 0033796981 scopus 로고    scopus 로고
    • Toxin gene analysis of a variant strain of Clostridium difficile that causes human clinical disease
    • Sambol, S. P., M. M. Merrigan, D. Lyerly, D. N. Gerding, and S. Johnson. 2000. Toxin gene analysis of a variant strain of Clostridium difficile that causes human clinical disease. Infect. Immun. 68:5480-5487.
    • (2000) Infect. Immun , vol.68 , pp. 5480-5487
    • Sambol, S.P.1    Merrigan, M.M.2    Lyerly, D.3    Gerding, D.N.4    Johnson, S.5
  • 34
    • 28844494379 scopus 로고    scopus 로고
    • Clostridium difficile: An important pathogen of food animals
    • Songer, J. G., and M. A. Anderson. 2006. Clostridium difficile: an important pathogen of food animals. Anaerobe 12:1-4.
    • (2006) Anaerobe , vol.12 , pp. 1-4
    • Songer, J.G.1    Anderson, M.A.2
  • 35
    • 0036708347 scopus 로고    scopus 로고
    • Molecular analysis of the pathogenicity locus and polymorphism in the putative negative regulator of toxin production (TcdC) among Clostridium difficile clinical isolates
    • Spigaglia, P., and P. Mastrantonio. 2002. Molecular analysis of the pathogenicity locus and polymorphism in the putative negative regulator of toxin production (TcdC) among Clostridium difficile clinical isolates. J. Clin. Microbiol. 40:3470-3475.
    • (2002) J. Clin. Microbiol , vol.40 , pp. 3470-3475
    • Spigaglia, P.1    Mastrantonio, P.2
  • 36
    • 33947195010 scopus 로고    scopus 로고
    • Typing and subtyping of Clostridium difficile isolates by using multiple-locus variable-number tandem-repeat analysis
    • van den Berg, R. J., I. Schaap, K. E. Templeton, C. H. Klaassen, and E. J. Kuijper. 2007. Typing and subtyping of Clostridium difficile isolates by using multiple-locus variable-number tandem-repeat analysis. J. Clin. Microbiol. 45:1024-1028.
    • (2007) J. Clin. Microbiol , vol.45 , pp. 1024-1028
    • van den Berg, R.J.1    Schaap, I.2    Templeton, K.E.3    Klaassen, C.H.4    Kuijper, E.J.5
  • 37
    • 0035872937 scopus 로고    scopus 로고
    • Replication slippage involves DNA polymerase pausing and dissociation
    • Viguera, E., D. Canceill, and S. D. Ehrlich. 2001. Replication slippage involves DNA polymerase pausing and dissociation. EMBO J. 20:2587-2595.
    • (2001) EMBO J , vol.20 , pp. 2587-2595
    • Viguera, E.1    Canceill, D.2    Ehrlich, S.D.3
  • 38
    • 33744982094 scopus 로고    scopus 로고
    • Effect of repeat copy number on variable-number tandem repeat mutations in Escherichia coli O157:H7
    • Vogler, A. J., C. Keys, Y. Nemoto, R. E. Colman, Z. Jay, and P. Keim. 2006. Effect of repeat copy number on variable-number tandem repeat mutations in Escherichia coli O157:H7. J. Bacteriol. 188:4253- 4263.
    • (2006) J. Bacteriol , vol.188 , pp. 4253-4263
    • Vogler, A.J.1    Keys, C.2    Nemoto, Y.3    Colman, R.E.4    Jay, Z.5    Keim, P.6


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