-
1
-
-
0037389971
-
Structure and function of archael box C/D sRNP core proteins
-
Aittaleb, M., Rashid, R., Chen, Q., Palmer, J., Daniels, C., and Li, H. 2003. Structure and function of archael box C/D sRNP core proteins. Nat. Struct. Biol. 10: 256-263.
-
(2003)
Nat. Struct. Biol.
, vol.10
, pp. 256-263
-
-
Aittaleb, M.1
Rashid, R.2
Chen, Q.3
Palmer, J.4
Daniels, C.5
Li, H.6
-
2
-
-
4744359723
-
Structural and thermodynamic evidence for a stabilizing role of Nop5p in S-adenosyl-L-methionine binding to fibrillarin
-
Aittaleb, M., Visone, T., Fenley, M., and Li, H. 2004. Structural and thermodynamic evidence for a stabilizing role of Nop5p in S-adenosyl-L- methionine binding to fibrillarin. J. Biol. Chem. 279: 41822-41829.
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 41822-41829
-
-
Aittaleb, M.1
Visone, T.2
Fenley, M.3
Li, H.4
-
3
-
-
0036703184
-
The expanding snoRNA world
-
Bachellerie, J.P., Cavaille, J., and Huttenhofer, A. 2002. The expanding snoRNA world. Biochimie 84: 775-790.
-
(2002)
Biochimie
, vol.84
, pp. 775-790
-
-
Bachellerie, J.P.1
Cavaille, J.2
Huttenhofer, A.3
-
4
-
-
0035747672
-
Enhancement of protein modeling by human intervention in applying the automatic programs 3D-JIGSAW and 3D-PSSM
-
Bates, P., Kelly, L., MacCallum, R., and Sternberg, M. 2001. Enhancement of protein modeling by human intervention in applying the automatic programs 3D-JIGSAW and 3D-PSSM. Proteins. Suppl. 5: 39-46.
-
(2001)
Proteins. Suppl.
, vol.5
, pp. 39-46
-
-
Bates, P.1
Kelly, L.2
MacCallum, R.3
Sternberg, M.4
-
5
-
-
3543012707
-
Crystallography and NMR system: A new software suite for macromolecular structure determination
-
Brünger, A., Adams, P., Clore, G., DeLano, W., Gros, P., Grosse-Kunstleve, R., Jiang, J., Kuszewski, J., Nilges, M., Pannu, N., et al. 1998. Crystallography and NMR system: A new software suite for macromolecular structure determination. Acta Crystallogr. D Biol. Crystallogr. 54: 905-921.
-
(1998)
Acta Crystallogr. D Biol. Crystallogr.
, vol.54
, pp. 905-921
-
-
Brünger, A.1
Adams, P.2
Clore, G.3
DeLano, W.4
Gros, P.5
Grosse-Kunstleve, R.6
Jiang, J.7
Kuszewski, J.8
Nilges, M.9
Pannu, N.10
-
6
-
-
0037099680
-
Site-specific cross-linking analyses reveal an asymmetric distribution for a box C/D snoRNP
-
Cahill, N., Friend, K., Speckman, W., Li, Z., Terns, R., Terns, M., and Steitz, J. 2002. Site-specific cross-linking analyses reveal an asymmetric distribution for a box C/D snoRNP. EMBO J. 21: 3816-3828.
-
(2002)
EMBO J.
, vol.21
, pp. 3816-3828
-
-
Cahill, N.1
Friend, K.2
Speckman, W.3
Li, Z.4
Terns, R.5
Terns, M.6
Steitz, J.7
-
7
-
-
0037428520
-
RNA-guided nucleotide modification of ribosomal and other RNAs
-
Decatur, W. and Fournier, M.J. 2003. RNA-guided nucleotide modification of ribosomal and other RNAs. J. Biol. Chem. 278: 695-698.
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 695-698
-
-
Decatur, W.1
Fournier, M.J.2
-
8
-
-
0034615782
-
Archaeal homologs of eukaryotic methylation guide small nucleolar RNAs: Lessons from the Pyrococcus genomes
-
Gaspin, C., Cavaille, J., Erauso, G., and Bachellerie, J.P. 2000. Archaeal homologs of eukaryotic methylation guide small nucleolar RNAs: Lessons from the Pyrococcus genomes. J. Mol. Biol. 297: 895-906.
-
(2000)
J. Mol. Biol.
, vol.297
, pp. 895-906
-
-
Gaspin, C.1
Cavaille, J.2
Erauso, G.3
Bachellerie, J.P.4
-
9
-
-
0030698635
-
Nucleolar KKE/D repeat proteins Nop56p and Nop58p interact with Nop1p and are required for ribosome biogenesis
-
Gauthier, T., Berges, T., Tollervey, D., and Hurt, E. 1997. Nucleolar KKE/D repeat proteins Nop56p and Nop58p interact with Nop1p and are required for ribosome biogenesis. Mol. Cell. Biol. 17: 7088-7098.
-
(1997)
Mol. Cell. Biol.
, vol.17
, pp. 7088-7098
-
-
Gauthier, T.1
Berges, T.2
Tollervey, D.3
Hurt, E.4
-
10
-
-
1642458421
-
The kink-turn motif in RNA is dimorphic, and metal ion dependent
-
Goody, T., Melcher, S., Norman, D., and Lilley, D. 2004. The kink-turn motif in RNA is dimorphic, and metal ion dependent. RNA 10: 254-264.
-
(2004)
RNA
, vol.10
, pp. 254-264
-
-
Goody, T.1
Melcher, S.2
Norman, D.3
Lilley, D.4
-
11
-
-
0030455820
-
Genomic libraries and a host strain designed for highly efficient two-hybrid selection in yeast
-
James, P., Halladay, J., and Craig, E. 1996. Genomic libraries and a host strain designed for highly efficient two-hybrid selection in yeast. Genetics 144: 1425-1436.
-
(1996)
Genetics
, vol.144
, pp. 1425-1436
-
-
James, P.1
Halladay, J.2
Craig, E.3
-
12
-
-
0035898634
-
Small nucleolar RNA-guided post-transcriptional modification of cellular RNAs
-
Kiss, T. 2001. Small nucleolar RNA-guided post-transcriptional modification of cellular RNAs. EMBO J. 20: 3617-3622.
-
(2001)
EMBO J.
, vol.20
, pp. 3617-3622
-
-
Kiss, T.1
-
13
-
-
0035423087
-
The kink-turn: A new RNA secondary structure motif
-
Klein, D., Schmeing, T., Moore, P., and Steitz, T. 2001. The kink-turn: A new RNA secondary structure motif. EMBO J. 20: 4214-4221.
-
(2001)
EMBO J.
, vol.20
, pp. 4214-4221
-
-
Klein, D.1
Schmeing, T.2
Moore, P.3
Steitz, T.4
-
14
-
-
0037082424
-
Archaeal ribosomal protein L7 is a functional homolog of the eukaryotic 15.5kD/Snu13p snoRNP core protein
-
Kuhn, J., Tran, E., and Maxwell, E.S. 2002. Archaeal ribosomal protein L7 is a functional homolog of the eukaryotic 15.5kD/Snu13p snoRNP core protein. Nucleic Acids Res. 30: 931-941.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 931-941
-
-
Kuhn, J.1
Tran, E.2
Maxwell, E.S.3
-
15
-
-
0033053360
-
Nop58p is a common component of the box C+D snoRNPs that is required for snoRNA stability
-
Lafontaine, D. and Tollervey, D. 1999. Nop58p is a common component of the box C+D snoRNPs that is required for snoRNA stability. RNA 5: 455-467.
-
(1999)
RNA
, vol.5
, pp. 455-467
-
-
Lafontaine, D.1
Tollervey, D.2
-
16
-
-
11144220725
-
X3M: A computer program to extract 3D models
-
CASP5 Conference, Asilomar, CA
-
Lund, O., Nielson, C., Lundegaard, P., and Worning, P. 2002. X3M: A computer program to extract 3D models. In CASP5 methods abstracts, p. 102. CASP5 Conference, Asilomar, CA.
-
(2002)
CASP5 Methods Abstracts
, pp. 102
-
-
Lund, O.1
Nielson, C.2
Lundegaard, P.3
Worning, P.4
-
17
-
-
2342475659
-
Molecular basis of box C/D RNA-protein interactions: Cocrystal structure of archaeal L7Ae and a box C/D RNA
-
Moore, T., Zhang, Y., Fenley, M., and Li, H. 2004. Molecular basis of box C/D RNA-protein interactions: Cocrystal structure of archaeal L7Ae and a box C/D RNA. Structure 12: 807-818.
-
(2004)
Structure
, vol.12
, pp. 807-818
-
-
Moore, T.1
Zhang, Y.2
Fenley, M.3
Li, H.4
-
18
-
-
0034081813
-
Box C/D snoRNA-associated proteins: Two pairs of evolutionarily ancient proteins and possible links to replication and transcription
-
Newman, D., Kuhn, J., Shanab, G., and Maxwell, E.S. 2000. Box C/D snoRNA-associated proteins: Two pairs of evolutionarily ancient proteins and possible links to replication and transcription. RNA 6: 861-879.
-
(2000)
RNA
, vol.6
, pp. 861-879
-
-
Newman, D.1
Kuhn, J.2
Shanab, G.3
Maxwell, E.S.4
-
19
-
-
0037107418
-
Hierarchical, clustered protein interactions with U4/U6 snRNA: A biochemical role for U4/U6 proteins
-
Nottrott, S., Urlaub, S., and Luhrmann, R. 2002. Hierarchical, clustered protein interactions with U4/U6 snRNA: A biochemical role for U4/U6 proteins. EMBO J. 21: 5527-5538.
-
(2002)
EMBO J.
, vol.21
, pp. 5527-5538
-
-
Nottrott, S.1
Urlaub, S.2
Luhrmann, R.3
-
20
-
-
0034697257
-
Homologs of small nucleolar RNAs in Archaea
-
Omer, A., Lowe, T., Russell, A., Ebhardt, E., Eddy, S., and Dennis, P. 2000. Homologs of small nucleolar RNAs in Archaea. Science 288: 517-522.
-
(2000)
Science
, vol.288
, pp. 517-522
-
-
Omer, A.1
Lowe, T.2
Russell, A.3
Ebhardt, E.4
Eddy, S.5
Dennis, P.6
-
21
-
-
0037117533
-
In vitro reconstitution and activity of a C/D box methylation guide ribonucleoprotein complex
-
Omer, A., Ziesche, S., Ebhardt, H., and Dennis, P. 2002. In vitro reconstitution and activity of a C/D box methylation guide ribonucleoprotein complex. Proc. Natl. Acad. Sci. 99: 5289-5294.
-
(2002)
Proc. Natl. Acad. Sci.
, vol.99
, pp. 5289-5294
-
-
Omer, A.1
Ziesche, S.2
Ebhardt, H.3
Dennis, P.4
-
22
-
-
0037673518
-
RNA-modifying machines in archaea
-
Omer, A., Ziesche, S., Decatur, W., Fournier, M.J., and Dennis, P. 2003. RNA-modifying machines in archaea. Mol. Microbiol. 48: 617-629.
-
(2003)
Mol. Microbiol.
, vol.48
, pp. 617-629
-
-
Omer, A.1
Ziesche, S.2
Decatur, W.3
Fournier, M.J.4
Dennis, P.5
-
23
-
-
0141869105
-
Functional requirement for symmetric assembly of archaeal box C/D small ribonucleoprotein particles
-
Rashid, R., Aittaleb, M., Chen, Q., Spiegel, K., Demeler, B., and Li, H. 2003. Functional requirement for symmetric assembly of archaeal box C/D small ribonucleoprotein particles. J. Mol. Biol. 333: 295-306.
-
(2003)
J. Mol. Biol.
, vol.333
, pp. 295-306
-
-
Rashid, R.1
Aittaleb, M.2
Chen, Q.3
Spiegel, K.4
Demeler, B.5
Li, H.6
-
24
-
-
0037324527
-
Binding of L7Ae protein to the K-turn of archaeal snoRNAs: A shared RNA binding motif for C/D and H/ACA box snoRNAs in Archaea
-
Roshdestvensky, T., Tang, T., Tchirkova, I., Brosius, J., Bachellerie, J.P., and Huttenhofer, A. 2003. Binding of L7Ae protein to the K-turn of archaeal snoRNAs: A shared RNA binding motif for C/D and H/ACA box snoRNAs in Archaea. Nucleic Acids Res. 31: 869-877.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 869-877
-
-
Roshdestvensky, T.1
Tang, T.2
Tchirkova, I.3
Brosius, J.4
Bachellerie, J.P.5
Huttenhofer, A.6
-
25
-
-
0042622380
-
Swiss-Model: An automated protein homology-modeling server
-
Schwede, T., Kopp, J., Guex, N., and Peitsch, M. 2003. Swiss-Model: An automated protein homology-modeling server. Nucleic Acids Res. 31: 3381-3385.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3381-3385
-
-
Schwede, T.1
Kopp, J.2
Guex, N.3
Peitsch, M.4
-
26
-
-
0037022130
-
Archaeal guide RNAs function in rRNA modification in the eukaryotic nucleus
-
Speckmann, W., Li, Z., Lowe, T., Eddy, S., Terns, R., and Terns, M. 2002. Archaeal guide RNAs function in rRNA modification in the eukaryotic nucleus. Curr. Biol. 12: 1-5.
-
(2002)
Curr. Biol.
, vol.12
, pp. 1-5
-
-
Speckmann, W.1
Li, Z.2
Lowe, T.3
Eddy, S.4
Terns, R.5
Terns, M.6
-
27
-
-
22244460838
-
The crystal structure of the Methanocaldococcus jannaschii multi-functional L7Ae RNA-binding protein reveals an induced-fit interaction with the box C/D RNAs
-
Suryadi, J., Tran, E., Maxwell, E.S., and Brown, B. 2005. The crystal structure of the Methanocaldococcus jannaschii multi-functional L7Ae RNA-binding protein reveals an induced-fit interaction with the box C/D RNAs. Biochemistry 44: 9657-9672.
-
(2005)
Biochemistry
, vol.44
, pp. 9657-9672
-
-
Suryadi, J.1
Tran, E.2
Maxwell, E.S.3
Brown, B.4
-
28
-
-
0037188531
-
Identification of 86 candidates for small non-messenger RNAs from the archaeon Archaeoglobus fuldidus
-
Tang, T., Bachellerie, J.P., Rozhdestvensky, T., Bortolin, M., Huber, H., Drungowski, M., Elge, T., Brosius, J., and Huttenhofer, A. 2002. Identification of 86 candidates for small non-messenger RNAs from the archaeon Archaeoglobus fuldidus. Proc. Natl. Acad. Sci. 99: 7536-7541.
-
(2002)
Proc. Natl. Acad. Sci.
, vol.99
, pp. 7536-7541
-
-
Tang, T.1
Bachellerie, J.P.2
Rozhdestvensky, T.3
Bortolin, M.4
Huber, H.5
Drungowski, M.6
Elge, T.7
Brosius, J.8
Huttenhofer, A.9
-
29
-
-
0036176517
-
Small nucleolar RNAs: Versatile transacting molecules of ancient evolutionary origin
-
Terns, M. and Terns, R. 2002. Small nucleolar RNAs: Versatile transacting molecules of ancient evolutionary origin. Gene Expr. 10: 17-39.
-
(2002)
Gene Expr.
, vol.10
, pp. 17-39
-
-
Terns, M.1
Terns, R.2
-
30
-
-
0027968068
-
Clustal W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson, J., Higgins, D., and Gibson, T. 1994. Clustal W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22: 4673-4680.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 4673-4680
-
-
Thompson, J.1
Higgins, D.2
Gibson, T.3
-
31
-
-
16044369360
-
Small nucleolar RNAs guide ribosomal RNA methylation
-
Tollervey, D. 1996. Small nucleolar RNAs guide ribosomal RNA methylation. Science 273: 1056-1057.
-
(1996)
Science
, vol.273
, pp. 1056-1057
-
-
Tollervey, D.1
-
32
-
-
0043026864
-
Efficient RNA 2′-Omethylation requires juxtaposed and symmetrically assembled archaeal box C/D and C′/D′ RNPs
-
Tran, E., Zhang, X., and Maxwell, E.S. 2003. Efficient RNA 2′-Omethylation requires juxtaposed and symmetrically assembled archaeal box C/D and C′/D′ RNPs. EMBO J. 22: 3930-3940.
-
(2003)
EMBO J.
, vol.22
, pp. 3930-3940
-
-
Tran, E.1
Zhang, X.2
Maxwell, E.S.3
-
33
-
-
3242771427
-
Evolutionary origins of the RNA-guided nucleotide-modification complexes: From the primitive translation apparatus?
-
Tran, E., Brown, J., and Maxwell, E.S. 2004. Evolutionary origins of the RNA-guided nucleotide-modification complexes: From the primitive translation apparatus? Trends Biochem. Sci. 29: 343-350.
-
(2004)
Trends Biochem. Sci.
, vol.29
, pp. 343-350
-
-
Tran, E.1
Brown, J.2
Maxwell, E.S.3
-
34
-
-
13944251291
-
Conserved spacing between the box C/D and C′/D′ RNPs of the archaeal box C/D sRNP complex is required for efficient 2′-O-methylation of target RNAs
-
Tran, E., Zhang, X., Lackey, L., and Maxwell, E.S. 2005. Conserved spacing between the box C/D and C′/D′ RNPs of the archaeal box C/D sRNP complex is required for efficient 2′-O-methylation of target RNAs. RNA 11: 285-293.
-
(2005)
RNA
, vol.11
, pp. 285-293
-
-
Tran, E.1
Zhang, X.2
Lackey, L.3
Maxwell, E.S.4
-
35
-
-
0034509631
-
Crystal structure of the spliceosomal 15.5kD protein bound to a U4 snRNA fragment
-
Vidovic, I., Nottrott, S., Hartmuth, K., Luhrmann, R., and Ficner, R. 2000. Crystal structure of the spliceosomal 15.5kD protein bound to a U4 snRNA fragment. Mol. Cell 6: 1331-1342.
-
(2000)
Mol. Cell
, vol.6
, pp. 1331-1342
-
-
Vidovic, I.1
Nottrott, S.2
Hartmuth, K.3
Luhrmann, R.4
Ficner, R.5
-
36
-
-
0034141555
-
Crystal structure of a fibrillarin homologue from Methanococcus jannaschii, a hyperthermophile, at 1.6 Å resolution
-
Wang, H., Boisvert, D., Kim, K., Kim, R., and Kim, S.H. 2000. Crystal structure of a fibrillarin homologue from Methanococcus jannaschii, a hyperthermophile, at 1.6 Å resolution. EMBO J. 19: 7-17.
-
(2000)
EMBO J.
, vol.19
, pp. 7-17
-
-
Wang, H.1
Boisvert, D.2
Kim, K.3
Kim, R.4
Kim, S.H.5
-
37
-
-
0034721649
-
A common core RNP structure shared between the small nucleolar box C/D RNPs and the spliceosomal U4 snRNP
-
Watkins, N., Segault, V., Charpentier, B., Nottrott, S., Fabrizio, P., Bachi, A., Wilm, M., Roshbash, M., Branlant, C., and Luhrmann, R. 2000. A common core RNP structure shared between the small nucleolar box C/D RNPs and the spliceosomal U4 snRNP. Cell 103: 457-466.
-
(2000)
Cell
, vol.103
, pp. 457-466
-
-
Watkins, N.1
Segault, V.2
Charpentier, B.3
Nottrott, S.4
Fabrizio, P.5
Bachi, A.6
Wilm, M.7
Roshbash, M.8
Branlant, C.9
Luhrmann, R.10
-
38
-
-
0036773686
-
Exclusive interaction of the 15.5kD protein with the terminal box C/D motif of a methylation guide snoRNP
-
Weinstein Szewczak, L., DeGregorio, S., Strobel, S., and Steitz, J. 2002. Exclusive interaction of the 15.5kD protein with the terminal box C/D motif of a methylation guide snoRNP. Chem. Biol. 9: 1095-1107.
-
(2002)
Chem. Biol.
, vol.9
, pp. 1095-1107
-
-
Weinstein Szewczak, L.1
DeGregorio, S.2
Strobel, S.3
Steitz, J.4
|