Proteomic analysis of the "Side Population" (SP) cells from murine bone marrow

Journal of Proteomics and Bioinformatics

Volumn 2, Issue 9, 2009, Pages 398-407

  Satyavani, Ravipati ^a   Fatima, Azra ^a   Sundaram, Curam S ^a   Anabalagan, Charumathi ^a   Saritha, C V ^a   Srinivas, G ^a   Khan, Aleem Ahmed ^b   Habibullah, C M ^b   Pande, Gopal ^a  

^a CENTRE FOR CELLULAR AND MOLECULAR BIOLOGY   (India)

^b DECCAN COLLEGE OF MEDICAL SCIENCES   (India)

Author keywords

Cell differentiation; Flow cytometry; Haematopoiesis; Stem cells

Indexed keywords

MURINAE; MUS;

EID: 75649084191     PISSN: None     EISSN: 0974276X     Source Type: Journal    
DOI: 10.4172/jpb.1000100     Document Type: Article

References (53)

1. Baharvand H, Hajheidari M, Zonouzi R, Ashtiani SK, et al. (2006) Comparative proteomic analysis of mouse embryonic stem cells and neonatal-derived cardiomyocytes. Biochem Biophys Res Commun 349: 1041-1049.
2. Baharvand H, Hajheidari M, Kazemi S, Ashtiani SK, Salekdeh GH (2006) Proteomic signature of human embryonic stem cells. Proteomics. 6: 3544-3549.
3. Baharvand H, Fathi A, van Hoof D, Salekdeh GH (2007) Concise review: trends in stem cell proteomics. Stem Cells 25: 1888-903.
4. Cavusoglu N, Thierse D, Mohand-Said S, Chalmel F, Poch O, et al. (2003) Differential proteomic analysis of the mouse retina: the induction of crystallin proteins by retinal degeneration in the rd1 mouse. Mol Cell Proteomics 2: 494-505.
5. Chen C, Lorimore SA, Evans CA, Whetton AD, Wright EG (2005) A proteomic analysis of murine bone marrow and its response to ionizing radiation. Proteomics 5: 4254-4263.
6. Eckfeldt CE, Mendenhall EM, Flynn CM, Wang TF, Pickart MA (2005) Functional analysis of human hematopoietic stem cell gene expression using zebrafish. PLoS Biol 3: e254.
7. Elliott ST, Crider DG, Garnham CP, Boheler KR, van Eyk JE (2004) Two-dimensional gel electrophoresis database ofmurine R1 embryonic stem cells. Proteomics 4: 3813-3832.
8. Epstein SP, Wolosin JM, Asbell PA (2005) P63 expression levels in side population and low light scattering ocular surface epithelial cells. Trans Am Ophthalmol Soc 103: 187-199.
9. Feldmann Jr RE, Bieback K, Maurer MH, Kalenka A (2005) Stem cell proteomes: a profile of human mesenchymal stem cells derived from umbilical cord blood. Electrophoresis 26: 2749-2758.
10. Feng J, Bussiere F, Hekimi S (2001) Mitochondrial electron transport is a key determinant of life span in Caenorhabditis elegans. Dev Cell 1: 633-644.
11. Gharahdaghi F, Weinberg CR, Meagher DA, Imai BS, Mische SM (1999) Mass spectrometric identification of proteins from silver-stained polyacrylamide gel: a method for the removal of silver ions to enhance sensitivity. Electrophoresis. 20: 601-605.
12. Goodell MA, Rosenzweig M, Kim H, Marks DF, De Maria M, et al. (1997) Dye efflux studies suggest that hematopoietic stem cells expressing low or undetectable levels of CD34 antigen exist in multiple species. Nat Med 3: 1337-1345.
13. Goodell MA, Brose K, Paradis G, Conner AS, Mulligan RC (1996) Isolation and functional properties of murine hematopoietic stem cells that are replicating in vivo. J Exp Med 183: 1797-1806.
14. Gulati AS, Ochsner SA, Henning SJ (2008) Molecular properties of side population-sorted cells from mouse small intestine. Am. J Physiol Gastrointest Liver Physiol 294: 286-94.
15. Hadnagya A, Gaboury L, Beaulieu R, Balicki D (2006) SP analysis may be used to identify cancer stem cell populations. Exp Cell Res 312: 3701-3710.
16. Hayman MW, Przyborski SA (2004) Proteomic identification of biomarkers expressed by human pluripotent stem cells. Biochem Biophys Res Commun 316: 918-923.
17. Hoffrogge R, Mikkat S, Scharf C, Beyer S, Christoph H, et al. (2006) 2-DE proteome analysis of a proliferating and differentiating human neuronal stem cell line (ReN cell VM). Proteomics 6: 1833-1847.
18. Hoffrogge R, Beyer S, Hubner R, Mikkat S, Mix E, et al. (2007) 2-DE profiling of GDNF over expression-related proteome changes in differentiating ST14A rat progenitor cells. Proteomics 7: 33-46.
19. Hoshi N, Kusakabe T, Taylor BJ, Kimura S (2007) Side population cells in the mouse thyroid exhibit stem/progenitor celllike characteristics. Endocrinology 148: 4251-4258.
20. Herrera MB, Bruno S, Buttiglieri S, Tetta C, Gatti S, et al. (2006) Isolation and characterization of a stem cell population from adult human liver. Stem Cells 24: 2840-2850.
21. Jonker JW, Freeman J, Bolscher E, Musters S, Alvi AJ, et al. (2005) Contribution of the ABC transporters Bcrp1 and Mdr1a/1b to the side population phenotype in mammary gland and bone marrow of mice. Stem Cells 23: 1059-1065.
22. Kawanabe N, Murakami K, Takano-Yamamoto T (2006) The presence of ABCG2-dependent side population cells in human periodontal ligaments. Biochem. Biophys. Res Commun 344: 1278-1283.
23. Kim SH, Jun S, Jang HS, Lim SK (2005) Identification of parathyroid hormone-regulated proteins in mouse bone marrow cells by proteomics. Biochem Biophys Res Commun 330: 423-429.
24. Kurosaki H, Kazuki Y, Hiratsuka M, Inoue T (2007) A comparison study in the proteomic signatures of multipotent germline stem cells, embryonic stem cells, and germline stem cells. Biochem Biophys Res Commun 353: 259-267.
25. Lee HK, Lee BH, Park SA, Kim CW (2006) The proteomic analysis of an adipocyte differentiated from human mesenchymal stem cells using two-dimensional gel electrophoresis. Proteomics 6: 1223-1229.
26. Liadaki K, Kho AT, Sanoudou D, Schienda J, Flint A, et al. (2005) Side population cells isolated from different tissues share transcriptome signatures and express tissue-specific m arkers. Exp Cell Res 303: 360-374.
27. Lin KK, Goodell MA (2006) Purification of hematopoietic stem cells using the side population. Methods Enzymol 420: 255-264.
28. Macpherson H, Keir P, Webb S, Samuel K, Boyle S, et al. (2005) Bone marrow-derived SP cells can contribute to the respiratory tract of mice in vivo. J Cell Sci 118: 2441-2450.
29. Mazurek S, Boschek CB, Hugo F, Eigenbrodt E (2005) Pyruvate kinase type M2 and its role in tumor growth and spreading. Semin Cancer Biol 15: 300-308.
30. Nagano K, Taoka M, Yamauchi Y, Itagaki C (2005) Largescale identification of proteins expressed in mouse embryonic stem cells. Proteomics 5:1346-1361.
31. Parmar K, Sauk-Schubert C, Burdick D, Handley M, Mauch P (2003) Sca+CD34- murine side population cells are highly enriched for primitive stem cells. Exp Hematol 31: 244-250.
32. Pascal LE, Oudes AJ, Petersen TW, Goo YA, Walashek LS, et al. (2007) Molecular and cellular characterization of ABCG2 in the prostate. BMC Urol 10: 6.
33. Pearce DJ, Bonnet D (2007) The combined use of Hoechst efflux ability and aldehyde dehydrogenase activity to identify murine and human hematopoietic stem cells. Exp Hematol 35: 1437-46.
34. Petersen BE, Bowen WC, Patrene KD, Mars WM (1999) Bone marrow as a potential source of hepatic oval cells. Science 284: 1168-70.
35. Scharenberg CW, Harkey MA, Torok-Storb B (2002) The ABCG2 transporter is an efficient Hoechst 33342 efflux pump and is preferentially expressed by immature human hematopoietic progenitors. Blood 99: 507-512.
36. Seo DC, Sung JM, Cho HJH, Seo KH, Choi IS, et al. (2007) Expression profiling of cancer stem cell in human lung adenocarcinoma A549 cells. Mol Cancer 22: 75.
37. Seshi B (2006) An integrated approach to mapping the proteome of the human bone marrow stromal cell. Proteomics 6: 5169-5182.
38. Son YS, Park JH, Kang YK, Park JS, Choi HS, et al. (2005) Heat shock 70-kDa protein 8 isoform 1 is expressed on the surface of human embryonic stem cells and downregulated upon differentiation. Stem Cells 23: 1502-1513.
39. Storms RW, Trujillo AP, Springer JB, Shah L, Colvin OM, et al. (1999) Isolation of primitive human hematopoietic progenitors on the basis of aldehyde dehydrogenase activity. Proc Natl Acad Sci USA 96: 9118-23.
40. Summer R, Kotton DN, Sun X, Ma B, Fitzsimmons K, et al. (2003) Side population cells and Bcrp1 expression in lung. Am. J. Physiol. Lung Cell Mol Physiol 285: L97-L104.
41. Takegawa T, Fujii H, Miwa S (1983) Change of pyruvate kinase isozymes from M2- to L-type during development of the red cell. Br J Haematol 54: 467-474.
42. Tao W, Wang M, Voss ED, Cocklin RR, Smith JA, et al. (2004) Comparative proteomic analysis of human CD34+ stem/progenitor cells and mature CD15+ myeloid cells. Stem Cells 22: 1003-1014.
43. Triel C, Vestergaard ME, Bolund L, Jensen TG, Jensen UB, et al. (2004) Side population cells in human and mouse epidermis lack stem cell characteristics. Exp Cell Res 295: 79-90.
44. Unwin RD, Gaskell SJ, Evans CA, Whetton AD (2003) The potential for proteomic definition of stem cell populations. Exp Hematol 31: 1147-1159.
45. Unwin RD, Smith DL, Blinco D, Wilson CL (2006) Quantitative proteomics reveals posttranslational control as a regulatory factor in primary hematopoietic stem cells. Blood 107: 4687-4694.
46. Van Hoof D, Mummery CL, Heck AJ, Krijgsveld J (2006a) Embryonic stem cell proteomics. Expert Rev Proteomics 3: 427-437.
47. Van Hoof D, Passier R, Ward-Van Oostwaard D, Pinkse MW, et al. (2006b) A quest for human and mouse embryonic stem cell-specific proteins. Mol Cell Proteomics 5: 1261-73.
48. Wang D, Gao L (2005) Proteomic analysis of neural differentiation of mouse embryonic stem cells. Proteomics 5: 4414-4426.
49. Ye NS, Chen J, Luo GA, Zhang RL (2006) Proteomic profiling of rat bone marrow mesenchymal stem cells induced by 5-azacytidine. Stem Cells Dev 15: 665-676.
50. Yin X, Mayr M, Xiao Q, Mayr U, et al. (2005) Proteomic dataset of Sca-1+ progenitor cells. Proteomics 5: 4533-4545.
51. Yourek G, Hussain MA, Mao JJ (2007) Cytoskeletal changes of mesenchymal stem cells during differentiation. ASAIO J 53: 219-28.
52. Zhou S, Schuetz JD, Bunting KD, Colapietro AM, Sampath J, et al. (2001) The ABC transporter Bcrp1/ABCG2 is expressed in a wide variety of stem cells and is a molecular determinant of the side-population phenotype. Nat Med 7: 1028-1034.
53. Zhou S, Morris JJ, Barnes Y, Lan L, Schuett JD, et al. (2002) Bcrp1 gene expression is required for normal numbers of side population stem cells in mice, and confers relative protection to mitoxantrone in hematopoietic cells in vivo. Proc Natl Acad Sci USA 99: 12339-12344.