Molecular identification of Pampus fishes (Perciformes, Stromateidae)

Ichthyological Research

Volumn 57, Issue 1, 2010, Pages 32-39

  Cui, Zhaoxia ^a   Liu, Yuan ^a,b   Liu, Jing ^a   Luan, Weisha ^a,b  

^a INSTITUTE OF OCEANOLOGY   (China)

^b UNIVERSITY OF CHINESE ACADEMY OF SCIENCES   (China)

Author keywords

16S rRNA; Cytochrome c oxidase I; Pampus; Pampus minor

Indexed keywords

PAMPUS; PAMPUS ARGENTEUS; PAMPUS CHINENSIS; PAMPUS ECHINOGASTER; PERCIFORMES; PISCES; STROMATEIDAE;

EID: 75549085965     PISSN: 13418998     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10228-009-0119-9     Document Type: Article

References (40)

1. Bloch ME (1793) Naturgeschichte der Ausländischen Fische. Siebenter Theil, Berlin 12: 9.
2. Bucklin A, Guarnieri M, Hill RS, Bentley AM, Kaartvedt S (1999) Taxonomic and systematic assessment of planktonic copepods using mitochondrial COI sequence variation and competitive, species-specific PCR. Hydrobiologia 401: 239-254.
3. Cheng QT (1962) Stromateidae, the fishes of South China Sea. Science Press, Beijing.
4. Cheng QT, Yang WH (1963) Stromateidae, the fishes of East China Sea. Science Press, Beijing.
5. Cheng QT, Zheng BS (1987) Systematic synopsis of Chinese fishes. Science Press, Beijing.
6. Deng SM, Xiong GQ, Zhan HX (1981) The preliminary study on the classification of Stromateoidei of China. In: Zhang ZQ (ed) Ichthyological thesis (No. 2). Science Press, Beijing, pp 25-38.
7. Doiuchi R, Nakabo T (2006) Molecular phylogeny of the stromateoid fishes (Teleostei: Perciformes) inferred from mitochondrial DNA sequences and compared with morphology-based hypotheses. Mol Phylogenet Evol 39: 111-123.
8. Euphrasen BA (1788) Beskrifning på trenne fiskar. Vensk Akad Nya Handl, Stockholm 9: 51-55.
9. Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39: 783-791.
10. Fowler HL (1972) A synopsis of the fishes of China. Antiquariaat Junk Netherlands 1: 296-305.
11. Haedrich RL (1967) The stromateoid fishes: systematics and a classification. Bull Mus Comp Zool 135: 31-139.
12. Hajibabaei M, Janzen DH, Burns JM, Hallwachs W, Hebert PDN (2006) DNA barcodes distinguish species of tropical Lepidoptera. Proc Natl Acad Sci USA 103: 968-971.
13. Hebert PDN, Cywinska A, Ball SL, de Waard JR (2003) Biological identifications through DNA barcodes. Proc R Soc Lond B 270: 313-321.
14. Huelsenbeck JP, Ronquist F (2001) MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17: 754-755.
15. Iguchi A, Ito H, Ueno M, Maeda T, Minami T, Hayashi I (2007) Molecular phylogeny of the deep-sea Buccinum species (Gastropoda: Buccinidae) around Japan: inter- and intraspecific relationships inferred from mitochondrial 16SrRNA sequences. Mol Phylogenet Evol 44: 1342-1345.
16. Kartavtsev YP, Jung SO, Lee YM, Byeon HK, Lee JS (2007) Complete mitochondrial genome of the bullhead torrent catfish, Liobagrus obesus (Siluriformes, Amblycipididae): genome description and phylogenetic considerations inferred from the Cyt b and 16S rRNA genes. Gene 396: 13-27.
17. Lane CE, Lindstrom SC, Saunders GW (2007) A molecular assessment of northeast Pacific Alaria species (Laminariales, Phaeophyceae) with reference to the utility of DNA barcoding. Mol Phylogenet Evol 44: 634-648.
18. Liu J, Li CS (1998) A new pomfret species, Pampus minor sp. nov. Chin J Oceanol Limnol 16: 280-285.
19. Liu J, You F, Li CS (1999) Zymogram characters of genus Pampus (Pisces: Stromateidae) from the coast of China. Marine Sciences 5: 31-34.
20. Liu J, Li CS, Li XS (2002) Studies on Chinese pomfret fishes of the genus Pampus (Pisces: Stromateidae). Studia Marina Sinica 44: 240-252.
21. May RM (1988) How many species are there on earth. Science 241: 1441-1449.
22. Nakabo T (1993) Fishes of Japan with pictorial keys to the species. Tokai University Press, Tokyo.
23. Palumbi SR (1996) Nucleic acids II: the polymerase chain reaction. In: Hillis DM, Moritz C, Mable BK (eds) Molecular systematics. Sinauer & Associates Inc, Sunderland, Massachusetts, pp 205-247.
24. Pfunder M, Holzgang O, Frey JE (2004) Development of microarray-based diagnostics of voles and shrews for use in biodiversity monitoring studies, and evaluation of mitochondrial cytochrome oxidase I vs. cytochrome b as genetic markers. Mol Ecol 13: 1277-1286.
25. Posada D, Crandall KA (1998) MODELTEST: testing the model of DNA substitution. Bioinformatics 14: 817-818.
26. Rozas J, Sánchez-DelBarrio JC, Messeguer X, Rozas R (2003) DnaSP, DNA polymorphism analyses by coalescent and other methods. Bioinformatics 19: 2496-2497.
27. Sambrook J, Russell DW (2001) Molecular cloning: a laboratory manual. Cold Spring Harbor Laboratory Press, New York.
28. Stepien CA, Kocher TD (1997) Moleculars and morphology in studies of fish evolution. In: Kocher TD, Stepien CA (eds) Molecular systematics of fishes. Academic Press, San Diego, pp 1-11.
29. Swofford DL (2002) PAUP*: phylogenetic analysis using parsimony, version 4. 10. Sinauer Associates, Sunderland, MA.
30. Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4. 0. Mol Biol Evol 24: 1596-1597.
31. Tavares ES, Baker AJ (2008) Single mitochondrial gene barcodes reliably identify sister-species in diverse clades of birds. BMC Evol Biol 8: 81.
32. Thalmann O, Hebler J, Poinar HN, Pääbo S, Vigilant L (2004) Unreliable mtDNA data due to nuclear insertions: a cautionary tale from analysis of humans and other great apes. Mol Ecol 13: 321-335.
33. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25: 4876-4882.
34. Timm J, Figiel M, Kochzius M (2008) Contrasting patterns in species boundaries and evolution of anemonefishes (Amphiprioninae, Pomacentridae) in the centre of marine biodiversity. Mol Phylogenet Evol 49: 268-276.
35. Ursvik A, Breines R, Christiansen JS, Fevolden S-E, Coucheron DH, Johansen SD (2007) A mitogenomic approach to the taxonomy of pollocks: Theragra chalcogramma and T. wnnmarchica represent one single species. BMC Evol Biol 7: 87.
36. Ward RD, Zemlak TS, Innes BH, Last PR, Hebert PDN (2005) DNA barcoding Australia's fish species. Phil Trans R Soc B Biol Sci 360: 1847-1857.
37. Wu HL (1985) Stromateidae. fishes of the Fujian regional fauna. Fujian Science Press, Fujian, pp 430-436.
38. Yamada U (1986) Fishes of the East China Sea and the Yellow Sea. Seikai National Fisheries Research Laboratory, Nagasaki.
39. Yamada U, Shirai S, Irie T, Torimura M, Deng SM, Zheng YJ, Li CS, Yong UK, Young SK (1995) Names and illustrations of fishes from the East China Sea and the Yellow Sea- Japanese-Chinese-Korean-Overseas Fishery Cooperation Foundation.
40. Zhang FY, Ma LB, Shi ZH, Ma CY (2008) Sequence variation and molecular phylogeny of mitochondrial COI gene segments from three pomfret species. J Fish Sci China 3: 392-399.