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Volumn 137, Issue 1, 2010, Pages 27-36

Whole genome amplification (WGA) for archiving and genotyping of clinical isolates of Cryptosporidium species

Author keywords

Cryptosporidium DNA; Genotyping; Multi displacement amplification; Whole genome amplification

Indexed keywords

GENOMIC DNA;

EID: 75149123846     PISSN: 00311820     EISSN: 14698161     Source Type: Journal    
DOI: 10.1017/S0031182009991132     Document Type: Article
Times cited : (12)

References (40)
  • 1
    • 0029949356 scopus 로고    scopus 로고
    • PicoGreen quantitation of DNA: Effective evaluation of samples pre- or post-PCR
    • Ahn, S., Costa, J. and Emanuel, J. R. (1996). PicoGreen quantitation of DNA: effective evaluation of samples pre- or post-PCR. Nucleic Acids Research 24, 2623-2625.
    • (1996) Nucleic Acids Research , vol.24 , pp. 2623-2625
    • Ahn, S.1    Costa, J.2    Emanuel, J.R.3
  • 4
    • 24344436666 scopus 로고    scopus 로고
    • Comparison of yield and genotyping performance of multiple displacement amplification and OmniPlex whole genome amplified DNA generated from multiple DNA sources
    • Bergen, A., Haque, K. A., Qi, Y., Beerman, M. B., Garcia-Closas, M., Rothman, N. and Chanock, S. J. (2005). Comparison of yield and genotyping performance of multiple displacement amplification and OmniPlex whole genome amplified DNA generated from multiple DNA sources. Human Mutation 26, 262-270.
    • (2005) Human Mutation , vol.26 , pp. 262-270
    • Bergen, A.1    Haque, K.A.2    Qi, Y.3    Beerman, M.B.4    Garcia-Closas, M.5    Rothman, N.6    Chanock, S.J.7
  • 7
    • 21644463967 scopus 로고    scopus 로고
    • Molecular epidemiology of tuberculosis: Methodology and applications
    • Burgos, M., Méndez, J. C. and Ribon, W. (2004). Molecular epidemiology of tuberculosis: methodology and applications. Biomedica 24 (Suppl. 1), 188-201.
    • (2004) Biomedica , vol.24 , Issue.SUPPL. 1 , pp. 188-201
    • Burgos, M.1    Méndez, J.C.2    Ribon, W.3
  • 8
    • 0034018206 scopus 로고    scopus 로고
    • A microsatellite marker reveals population heterogeneity within human and animal genotypes of Cryptosporidium parvum
    • Cacciò , S., Homan, W., Camilli, R., Traldi, G., Kortbeek, T. and Pozio, E. (2000). A microsatellite marker reveals population heterogeneity within human and animal genotypes of Cryptosporidium parvum. Parasitology 120, 237-244.
    • (2000) Parasitology , vol.120 , pp. 237-244
    • Cacciò, S.1    Homan, W.2    Camilli, R.3    Traldi, G.4    Kortbeek, T.5    Pozio, E.6
  • 9
    • 33751379588 scopus 로고    scopus 로고
    • Molecular characterization of the Cryptosporidium parvum IOWA isolate kept in different laboratories
    • Cama, V., Arrowood, M. J., Ortega, Y. R. and Xiao, L. (2006). Molecular characterization of the Cryptosporidium parvum IOWA isolate kept in different laboratories. The Journal of Eukaryotic Microbiology 53 (Suppl. 1), S40-S42.
    • (2006) The Journal of Eukaryotic Microbiology , vol.53 , Issue.SUPPL. 1
    • Cama, V.1    Arrowood, M.J.2    Ortega, Y.R.3    Xiao, L.4
  • 10
    • 0029966845 scopus 로고    scopus 로고
    • Whole genome amplification using a degenerate oligonucleotide primer allows hundreds of genotypes to be performed on less than one nanogram of genomic DNA
    • Cheung, V. and Nelson, S. F. (1996). Whole genome amplification using a degenerate oligonucleotide primer allows hundreds of genotypes to be performed on less than one nanogram of genomic DNA. Proceedings of the National Academy of Sciences, USA 93, 14676-14679.
    • (1996) Proceedings of the National Academy of Sciences, USA , vol.93 , pp. 14676-14679
    • Cheung, V.1    Nelson, S.F.2
  • 13
    • 0026207466 scopus 로고
    • DNA polymerase fidelity and the polymerase chain reaction
    • Eckert, K. and Kunkel, T. A. (1991). DNA polymerase fidelity and the polymerase chain reaction. PCR Methods and Applications 1, 17-24.
    • (1991) PCR Methods and Applications , vol.1 , pp. 17-24
    • Eckert, K.1    Kunkel, T.A.2
  • 14
    • 0035653504 scopus 로고    scopus 로고
    • Modification of a rapid method for the identification of gene-specific polymorphisms in Cryptosporidium parvum and its application to clinical and epidemiological investigations
    • Elwin, K., Chalmers, R. M., Roberts, R., Guy, E. C. and Casemore, D. P. (2001). Modification of a rapid method for the identification of gene-specific polymorphisms in Cryptosporidium parvum and its application to clinical and epidemiological investigations. Applied and Environmental Microbiology 67, 5581-5584.
    • (2001) Applied and Environmental Microbiology , vol.67 , pp. 5581-5584
    • Elwin, K.1    Chalmers, R.M.2    Rob, R.3    Guy, E.C.4    Casemore, D.P.5
  • 15
    • 0027446875 scopus 로고
    • Fidelity of phi 29 DNA polymerase. Comparison between protein-primed initiation and DNA polymerization
    • Esteban, J., Salas, M. and Blanco, L. (1993). Fidelity of phi 29 DNA polymerase. Comparison between protein-primed initiation and DNA polymerization. The Journal of Biological Chemistry 268, 2719-2726.
    • (1993) The Journal of Biological Chemistry , vol.268 , pp. 2719-2726
    • Esteban, J.1    Salas, M.2    Blanco, L.3
  • 18
    • 1442299253 scopus 로고    scopus 로고
    • Measurement of DNA single-strand breaks by alkaline elution and fluorometric DNA quantification
    • Goumenou, M. and Machera, K. (2004). Measurement of DNA single-strand breaks by alkaline elution and fluorometric DNA quantification. Analytical Biochemistry 326, 146-152.
    • (2004) Analytical Biochemistry , vol.326 , pp. 146-152
    • Goumenou, M.1    MacHera, K.2
  • 19
    • 0033775265 scopus 로고    scopus 로고
    • Helicobacter pylori : CClonal population structure and restricted transmission within families revealed by molecular typing
    • Han, S., Zschausch, H. C., Meyer, H. G., Schneider, T., Loos, M., Bhakdi, S. and Maeurer, M. J. (2000). Helicobacter pylori : clonal population structure and restricted transmission within families revealed by molecular typing. Journal of Clinical Microbiology 38, 3646-3651.
    • (2000) Journal of Clinical Microbiology , vol.38 , pp. 3646-3651
    • Han, S.1    Zschausch, H.C.2    Meyer, H.G.3    Schneider, T.4    Loos, M.5    Bhakdi, S.6    Maeurer, M.J.7
  • 21
    • 0036020666 scopus 로고    scopus 로고
    • Rubicon genomics
    • Inc
    • Langmore, J. (2002). Rubicon Genomics, Inc. Pharmacogenomics 3, 557-560.
    • (2002) Pharmacogenomics , vol.3 , pp. 557-560
    • Langmore, J.1
  • 22
    • 0036089538 scopus 로고    scopus 로고
    • Analysis of sequence diversity at the highly polymorphic Cpgp40/15 locus among Cryptosporidium isolates from human immunodeficiency virus-infected children in South Africa
    • Leav, B., Mackay, M. R., Anyanwu, A., O'Connor, R. M., Cevallos, A. M., Kindra, G., Rollins, N. C., Bennish, M. L., Nelson, R. G. and Ward, H. D. (2002). Analysis of sequence diversity at the highly polymorphic Cpgp40/15 locus among Cryptosporidium isolates from human immunodeficiency virus-infected children in South Africa. Infection and Immunity 70, 3881-3890.
    • (2002) Infection and Immunity , vol.70 , pp. 3881-3890
    • Leav, B.1    MacKay, M.R.2    Anyanwu, A.3    O'Connor, R.M.4    Cevallos, A.M.5    Kindra, G.6    Rollins, N.C.7    Bennish, M.L.8    Nelson, R.G.9    Ward, H.D.10
  • 23
    • 0345269282 scopus 로고    scopus 로고
    • Molecular epidemiological analysis of Cryptosporidium isolates from humans and animals by using a heteroduplex mobility assay and nucleic acid sequencing based on a small double-stranded RNA element
    • Leoni, F., Gallimore, C. I., Green, J. and McLauchlin, J. (2003) Molecular epidemiological analysis of Cryptosporidium isolates from humans and animals by using a heteroduplex mobility assay and nucleic acid sequencing based on a small double-stranded RNA element. Journal of Clinical Microbiology 41, 981-992.
    • (2003) Journal of Clinical Microbiology , vol.41 , pp. 981-992
    • Leoni, F.1    Gallimore, C.I.2    Green, J.3    McLauchlin, J.4
  • 24
    • 4344636975 scopus 로고    scopus 로고
    • Isothermal multiple displacement amplification: A highly reliable approach for generating unlimited high molecular weight genomic DNA from clinical specimens
    • Luthra, R. and Medeiros, L. J. (2004). Isothermal multiple displacement amplification: a highly reliable approach for generating unlimited high molecular weight genomic DNA from clinical specimens. The Journal of Molecular Diagnostics 6, 236-242.
    • (2004) The Journal of Molecular Diagnostics , vol.6 , pp. 236-242
    • Luthra, R.1    Medeiros, L.J.2
  • 25
    • 0141605224 scopus 로고    scopus 로고
    • Multilocus genotyping of Cryptosporidium parvum Type 2: Population genetics and sub-structuring
    • Mallon, M., MacLeod, A., Wastling, J. M., Smith, H. and Tait, A. (2003). Multilocus genotyping of Cryptosporidium parvum Type 2: population genetics and sub-structuring. Infection, Genetics and Evolution 3, 207-218.
    • (2003) Infection, Genetics and Evolution , vol.3 , pp. 207-218
    • Mallon, M.1    MacLeod, A.2    Wastling, J.M.3    Smith, H.4    Tait, A.5
  • 27
    • 23044443627 scopus 로고    scopus 로고
    • Comparing whole-genome amplification methods and sources of biological samples for single-nucleotide polymorphism genotyping
    • Park, J., Beaty, T. H., Boyce, P., Scott, A. F. and McIntosh, I. (2005). Comparing whole-genome amplification methods and sources of biological samples for single-nucleotide polymorphism genotyping. Clinical Chemistry 51, 1520-1523.
    • (2005) Clinical Chemistry , vol.51 , pp. 1520-1523
    • Park, J.1    Beaty, T.H.2    Boyce, P.3    Scott, A.F.4    McIntosh, I.5
  • 28
    • 0029781585 scopus 로고    scopus 로고
    • Preimplantation diagnosis by whole-genome amplification, PCR amplification, and solid-phase minisequencing of blastomere DNA
    • Paunio, T., Reima, I. and Syvänen, A. C. (1996). Preimplantation diagnosis by whole-genome amplification, PCR amplification, and solid-phase minisequencing of blastomere DNA. Clinical Chemistry 42, 1382-1390.
    • (1996) Clinical Chemistry , vol.42 , pp. 1382-1390
    • Paunio, T.1    Reima, I.2    Syvänen, A.C.3
  • 29
    • 40949096872 scopus 로고    scopus 로고
    • Trypanosomosis in the Gambia: Prevalence in working horses and donkeys detected by whole genome amplification and PCR, and evidence for interactions between trypanosome species
    • Pinchbeck, G., Morrison, L. J., Tait, A., Langford, J., Meehan, L., Jallow, S., Jallow, J., Jallow, A. and Christley, R. M. (2008). Trypanosomosis in The Gambia: prevalence in working horses and donkeys detected by whole genome amplification and PCR, and evidence for interactions between trypanosome species. BMC Veterinary Research 4, 7-13.
    • (2008) BMC Veterinary Research , vol.4 , pp. 7-13
    • Pinchbeck, G.1    Morrison, L.J.2    Tait, A.3    Langford, J.4    Meehan, L.5    Jallow, S.6    Jallow, J.7    Jallow, A.8    Christley, R.M.9
  • 31
    • 0031194671 scopus 로고    scopus 로고
    • Characterization of PicoGreen reagent and development of a fluorescence-based solution assay for double-stranded DNA quantitation
    • Singer, V., Jones, L. J., Yue, S. T. and Haugland, R. P. (1997). Characterization of PicoGreen reagent and development of a fluorescence-based solution assay for double-stranded DNA quantitation. Analytical Biochemistry 249, 228-238.
    • (1997) Analytical Biochemistry , vol.249 , pp. 228-238
    • Singer, V.1    Jones, L.J.2    Yue, S.T.3    Haugland, R.P.4
  • 32
    • 33645049299 scopus 로고    scopus 로고
    • Tools for investigating the environmental transmission of Cryptosporidium and Giardia infections in humans
    • Smith, H., Cacciò , S. M., Tait, A., McLauchlin, J. and Thompson, R. C. (2006). Tools for investigating the environmental transmission of Cryptosporidium and Giardia infections in humans. Trends in Parasitology 22, 160-167.
    • (2006) Trends in Parasitology , vol.22 , pp. 160-167
    • Smith, H.1    Cacciò, S.M.2    Tait, A.3    McLauchlin, J.4    Thompson, R.C.5
  • 35
    • 0030902945 scopus 로고    scopus 로고
    • PCR-RFLP analysis of the Cryptosporidium oocyst wall protein (COWP) gene discriminates between C. wrairi and C. parvum, and between C. parvum isolates of human and animal origin
    • Spano, F., Putignani, L., McLauchlin, J., Casemore, D. P. and Crisanti, A. (1997). PCR-RFLP analysis of the Cryptosporidium oocyst wall protein (COWP) gene discriminates between C. wrairi and C. parvum, and between C. parvum isolates of human and animal origin. FEMS Microbiology Letters 150, 209-217.
    • (1997) FEMS Microbiology Letters , vol.150 , pp. 209-217
    • Spano, F.1    Putignani, L.2    McLauchlin, J.3    Casemore, D.P.4    Crisanti, A.5
  • 36
    • 0033946226 scopus 로고    scopus 로고
    • Cloning and sequence analysis of a highly polymorphic Cryptosporidium parvum gene encoding a 60-kilodalton glycoprotein and characterization of its 15- and 45-kilodalton zoite surface antigen products
    • Strong, W., Gut, J. and Nelson, R. G. (2000). Cloning and sequence analysis of a highly polymorphic Cryptosporidium parvum gene encoding a 60-kilodalton glycoprotein and characterization of its 15- and 45-kilodalton zoite surface antigen products. Infection and Immunity 68, 4117-4134.
    • (2000) Infection and Immunity , vol.68 , pp. 4117-4134
    • Strong, W.1    Gut, J.2    Nelson, R.G.3
  • 38
    • 0026736251 scopus 로고
    • Degenerate oligonucleotide-primed PCR: General amplification of target DNA by a single degenerate primer
    • Telenius, H., Carter, N. P., Bebb, C. E., Nordenskjöld, M., Ponder, B. A. and Tunnacliffe, A. (1992). Degenerate oligonucleotide-primed PCR: general amplification of target DNA by a single degenerate primer. Genomics 13, 718-725.
    • (1992) Genomics , vol.13 , pp. 718-725
    • Telenius, H.1    Carter, N.P.2    Bebb, C.E.3    Nordenskjöld, M.4    Ponder, B.A.5    Tunnacliffe, A.6
  • 39
    • 0031717195 scopus 로고    scopus 로고
    • An automated hydrodynamic process for controlled, unbiased DNA shearing
    • Thorstenson, Y., Hunicke-Smith, S. P., Oefner, P. J. and Davis, R. W. (1998) An automated hydrodynamic process for controlled, unbiased DNA shearing. Genome Research 8, 848-855.
    • (1998) Genome Research , vol.8 , pp. 848-855
    • Thorstenson, Y.1    Hunicke-Smith, S.P.2    Oefner, P.J.3    Davis, R.W.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.