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Volumn 53, Issue 3, 2009, Pages 749-757

Generalized structure and evolution of ITS1 and ITS2 rDNA in black flies (Diptera: Simuliidae)

Author keywords

Evolution; ITS1; ITS2; Secondary structure; Simuliidae

Indexed keywords

DIPTERA; PROSIMULIINI; SIMULIIDAE; SIMULIINI; SIMULIUM NIGRICOXUM;

EID: 74949138619     PISSN: 10557903     EISSN: 10959513     Source Type: Journal    
DOI: 10.1016/j.ympev.2009.07.032     Document Type: Article
Times cited : (16)

References (46)
  • 2
    • 0003016687 scopus 로고
    • Concerted evolution of multigene families
    • Nei, M., Koehn, R.K. (Eds.), Sinauer Associates, Boston, MA
    • Arnheim, N., 1983. Concerted evolution of multigene families. In: Nei, M., Koehn, R.K. (Eds.), Evolution of Genes and Proteins. Sinauer Associates, Boston, MA, pp. 38-61.
    • (1983) Evolution of Genes and Proteins , pp. 38-61
    • Arnheim, N.1
  • 3
    • 53149140277 scopus 로고    scopus 로고
    • Phylogenetics and temporal diversification of the earliest true flies (Insecta; Diptera) based on multiple nuclear genes
    • Bertone, M.A., Courtney, G.W., Wiegman, B.M., 2008. Phylogenetics and temporal diversification of the earliest true flies (Insecta; Diptera) based on multiple nuclear genes. Syst. Entomol. 33, 668-687.
    • (2008) Syst. Entomol. , vol.33 , pp. 668-687
    • Bertone, M.A.1    Courtney, G.W.2    Wiegman, B.M.3
  • 4
    • 0027226139 scopus 로고
    • Molecular identification of onchocerciasis vector sibling species in black flies (Diptera: Simuliidae)
    • Brockhouse, C.L., Vajime, C.G., Marin, R., Tanguay, R.M., 1993. Molecular identification of onchocerciasis vector sibling species in black flies (Diptera: Simuliidae). Biochem. Biophys. Res. Commun. 194, 628-634.
    • (1993) Biochem. Biophys. Res. Commun. , vol.194 , pp. 628-634
    • Brockhouse, C.L.1    Vajime, C.G.2    Marin, R.3    Tanguay, R.M.4
  • 5
    • 0028303111 scopus 로고
    • Rapid morphological radiation and convergence among races of the butterfly Heliconius erato inferred from patterns of mitochondrial DNA evolution
    • Brower, A.B.Z., 1994. Rapid morphological radiation and convergence among races of the butterfly Heliconius erato inferred from patterns of mitochondrial DNA evolution. Proc. Natl. Acad. Sci. USA 91, 6491-6495.
    • (1994) Proc. Natl. Acad. Sci. USA , vol.91 , pp. 6491-6495
    • Brower, A.B.Z.1
  • 6
    • 35948964127 scopus 로고    scopus 로고
    • DNA identification of urban Tanytarsini chironomids (Diptera: Chironomidae)
    • Carew, M.E., Pettigrove, V., Cox, R.L., Hoffmann, A.A., 2007. DNA identification of urban Tanytarsini chironomids (Diptera: Chironomidae). J. N. Am. Benthol. Soc. 26, 586-599.
    • (2007) J. N. Am. Benthol. Soc. , vol.26 , pp. 586-599
    • Carew, M.E.1    Pettigrove, V.2    Cox, R.L.3    Hoffmann, A.A.4
  • 8
    • 0003077394 scopus 로고
    • An annotated list of and keys to the immature black flies of Alberta (Diptera: Simuliidae)
    • Currie, D.C., 1986. An annotated list of and keys to the immature black flies of Alberta (Diptera: Simuliidae). Mem. Entomol. Soc. Can. 134, 1-90.
    • (1986) Mem. Entomol. Soc. Can. , vol.134 , pp. 1-90
    • Currie, D.C.1
  • 10
    • 36649019535 scopus 로고    scopus 로고
    • A new black fly (Diptera: Simuliidae) genus from mid Cretaceous (Turonian) amber of New Jersey
    • Grimaldi, D. (Ed.), Backhuis Publishers, Leiden, The Netherlands
    • Currie, D.C., Grimaldi, D., 2000. A new black fly (Diptera: Simuliidae) genus from mid Cretaceous (Turonian) amber of New Jersey. In: Grimaldi, D. (Ed.), Studies on Fossils in Amber, with Particular Reference to the Cretaceous of New Jersey. Backhuis Publishers, Leiden, The Netherlands, pp. 473-485.
    • (2000) Studies on Fossils in Amber, with Particular Reference to the Cretaceous of New Jersey , pp. 473-485
    • Currie, D.C.1    Grimaldi, D.2
  • 12
    • 33750838592 scopus 로고    scopus 로고
    • Population genetic structure of a rare high-elevation black fly, Metacnephia coloradensis, occupying Colorado lake outlet streams
    • Finn, D.S., Adler, P.H., 2006. Population genetic structure of a rare high-elevation black fly, Metacnephia coloradensis, occupying Colorado lake outlet streams. Freshw. Biol. 51, 2240-2251.
    • (2006) Freshw. Biol. , vol.51 , pp. 2240-2251
    • Finn, D.S.1    Adler, P.H.2
  • 13
    • 57449092994 scopus 로고    scopus 로고
    • Recent origins and genetic fragmentation of Simulium (Hebridosimulium) laciniatum (Diptera), the endemic Fijian simuliid
    • Gaudreau, C., LaRue, B., Charbonneau, V., Charpentier, G., Craig, D.A., 2008. Recent origins and genetic fragmentation of Simulium (Hebridosimulium) laciniatum (Diptera), the endemic Fijian simuliid. Invertebr. Syst. 22, 555-562.
    • (2008) Invertebr. Syst. , vol.22 , pp. 555-562
    • Gaudreau, C.1    Larue, B.2    Charbonneau, V.3    Charpentier, G.4    Craig, D.A.5
  • 14
    • 0000216990 scopus 로고
    • Remarques sur la classification des Simuliidae
    • Grenier, P., Rageau, J., 1960. Remarques sur la classification des Simuliidae. Bull. Soc. Pathol. Exot. 53, 727-742.
    • (1960) Bull. Soc. Pathol. Exot. , vol.53 , pp. 727-742
    • Grenier, P.1    Rageau, J.2
  • 15
    • 0242578620 scopus 로고    scopus 로고
    • A simple, fast and accurate algorithm to estimate large phylogenies by maximum likelihood
    • Guindon, S., Gascuel, O., 2003. A simple, fast and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst. Biol. 52, 696-704.
    • (2003) Syst. Biol. , vol.52 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2
  • 17
    • 0022825283 scopus 로고
    • Invertebrates, mainly insects, from the freshwater, Lower Cretaceous, Koonwarra Fossil Bed (Korrumburra Group), South Gippsland
    • Jell, P.A., Duncan, P.M., 1986. Invertebrates, mainly insects, from the freshwater, Lower Cretaceous, Koonwarra Fossil Bed (Korrumburra Group), South Gippsland. Victoria. Mem. Assoc. Austral. Paleontol. 3, 111-205.
    • (1986) Victoria. Mem. Assoc. Austral. Paleontol. , vol.3 , pp. 111-205
    • Jell, P.A.1    Duncan, P.M.2
  • 18
    • 0033485458 scopus 로고    scopus 로고
    • Ribosomal internal spacer 2 (ITS2) exhibits a common core of secondary structure in vertebrates and yeast
    • Joseph, N., Krauskopf, E., Vera, M.I., Michot, B., 1999. Ribosomal internal spacer 2 (ITS2) exhibits a common core of secondary structure in vertebrates and yeast. Nucleic Acids Res. 27, 4533-4540.
    • (1999) Nucleic Acids Res , vol.27 , pp. 4533-4540
    • Joseph, N.1    Krauskopf, E.2    Vera, M.I.3    Michot, B.4
  • 19
    • 0035527379 scopus 로고    scopus 로고
    • Molecular and morphological phylogenetic analysis of an insular radiation in Pacific black flies (Simulium)
    • Joy, D.A., Conn, J.E., 2001. Molecular and morphological phylogenetic analysis of an insular radiation in Pacific black flies (Simulium). Syst. Biol. 50, 18-38.
    • (2001) Syst. Biol. , vol.50 , pp. 18-38
    • Joy, D.A.1    Conn, J.E.2
  • 20
    • 34748895466 scopus 로고    scopus 로고
    • Genetic variation tracks ecological segregation in Pacific island black flies
    • Joy, D.A., Craig, D.A., Conn, J.E., 2007. Genetic variation tracks ecological segregation in Pacific island black flies. Heredity 99, 452-459.
    • (2007) Heredity , vol.99 , pp. 452-459
    • Joy, D.A.1    Craig, D.A.2    Conn, J.E.3
  • 21
    • 0001827356 scopus 로고
    • New Mesozoic Simuliidae and Leptoconopidae and the origins of blood-sucking in lower dipterans
    • Kalugina, N.S., 1991. New Mesozoic Simuliidae and Leptoconopidae and the origins of blood-sucking in lower dipterans. Paleontol. Zh. 1, 69-80. Krüger, A., Gelhaus, A., Garms, R., 2000. Molecular identification and phylogeny of East African Simulium damnosum s.l. and their relationship with West African species of the complex (Diptera: Simuliidae). Insect Mol. Biol. 9, 101-108.
    • (1991) Paleontol. Zh. , vol.1 , pp. 69-80
    • Kalugina, N.S.1
  • 22
    • 0034143443 scopus 로고    scopus 로고
    • Molecular identification and phylogeny of East African Simulium damnosum s.l. and their relationship with West African species of the complex (Diptera: Simuliidae)
    • Krüger, A., Gelhaus, A., Garms, R., 2000. Molecular identification and phylogeny of East African Simulium damnosum s.l. and their relationship with West African species of the complex (Diptera: Simuliidae). Insect Mol Biol. 9, 101-108.
    • (2000) Insect Mol Biol. , vol.9 , pp. 101-108
    • Krüger, A.1    Gelhaus, A.2    Garms, R.3
  • 23
    • 33745750063 scopus 로고    scopus 로고
    • Cytogenetic and PCR-based identification of S. damnosum 'Nkusi J' as the anthropophilic blackfly in the Uluguru onchocerciasis focus in Tanzania
    • Krueger, A., Kalinga, A.K., Kibweja, A.M., Mwaikonyole, A., Maegga, B.T.A., 2006. Cytogenetic and PCR-based identification of S. damnosum 'Nkusi J' as the anthropophilic blackfly in the Uluguru onchocerciasis focus in Tanzania. Trop. Med. Int. Health 11, 1066-1074.
    • (2006) Trop. Med. Int. Health , vol.11 , pp. 1066-1074
    • Krueger, A.1    Kalinga, A.K.2    Kibweja, A.M.3    Mwaikonyole, A.4    Maegga, B.T.A.5
  • 24
    • 0031020581 scopus 로고    scopus 로고
    • The internal transcribed spacer 2 exhibits a common secondary structure in green algae and flowering plants
    • Mai, J.C., Coleman, A.W., 1997. The internal transcribed spacer 2 exhibits a common secondary structure in green algae and flowering plants. J. Mol. Evol. 44, 258- 271.
    • (1997) J. Mol. Evol. , vol.44 , pp. 258-271
    • Mai, J.C.1    Coleman, A.W.2
  • 25
    • 0031148663 scopus 로고    scopus 로고
    • Phylogenetic relationships of the Culicomorpha inferred from 18S and 5.8S sequences (Diptera: Nematocera)
    • Miller, B.R., Crabtree, M.B., Savage, H.M., 1997. Phylogenetic relationships of the Culicomorpha inferred from 18S and 5.8S sequences (Diptera: Nematocera). Insect Mol. Biol. 8, 105-114.
    • (1997) Insect Mol. Biol. , vol.8 , pp. 105-114
    • Miller, B.R.1    Crabtree, M.B.2    Savage, H.M.3
  • 26
    • 0036914045 scopus 로고    scopus 로고
    • Completion of the sequence of the nuclear ribosomal DNA subunit of Simulium sanctipauli, with descriptions of the 18S, 28S genes and the IGS
    • Morales-Hojas, R., Post, R.J., Wilson, M.D., Cheke, R.A., 2002. Completion of the sequence of the nuclear ribosomal DNA subunit of Simulium sanctipauli, with descriptions of the 18S, 28S genes and the IGS. Med. Vet. Entomol. 16, 386-394.
    • (2002) Med. Vet. Entomol. , vol.16 , pp. 386-394
    • Morales-Hojas, R.1    Post, R.J.2    Wilson, M.D.3    Cheke, R.A.4
  • 27
    • 0034008562 scopus 로고    scopus 로고
    • Molecular sequence data resolves basal divergences within Simuliidae (Diptera)
    • Moulton, J.K., 2000. Molecular sequence data resolves basal divergences within Simuliidae (Diptera). Syst. Entomol. 25, 95-113.
    • (2000) Syst. Entomol. , vol.25 , pp. 95-113
    • Moulton, J.K.1
  • 28
    • 0037387830 scopus 로고    scopus 로고
    • Can the current molecular arsenal adequately track rapid divergence events within Simuliidae (Diptera)?
    • Moulton, J.K., 2003. Can the current molecular arsenal adequately track rapid divergence events within Simuliidae (Diptera)? Mol. Phylogenet. Evol. 27, 45-57.
    • (2003) Mol. Phylogenet. Evol. , vol.27 , pp. 45-57
    • Moulton, J.K.1
  • 29
    • 34547697589 scopus 로고    scopus 로고
    • Rapid diagnostic PCR assays for members of the Culicoides obsoletus and Culicoides pulicaris species complexes, implicated vectors of bluetongue virus in Europe
    • Nolan, D.V., Carpenter, S., Barber, J., Mellor, P.S., Dallas, J.F., Mordue Luntz, A.J., Piertney, S.B., 2007. Rapid diagnostic PCR assays for members of the Culicoides obsoletus and Culicoides pulicaris species complexes, implicated vectors of bluetongue virus in Europe. Vet. Microbiol. 124, 82-94.
    • (2007) Vet. Microbiol. , vol.124 , pp. 82-94
    • Nolan, D.V.1    Carpenter, S.2    Barber, J.3    Mellor, P.S.4    Dallas, J.F.5    Mordue Luntz, A.J.6    Piertney, S.B.7
  • 30
    • 0031731302 scopus 로고    scopus 로고
    • The structure of the ITS2 proximal stem is required for pre-rRNA processing in yeast
    • Peculis, B.A., Greer, C.L., 1998. The structure of the ITS2 proximal stem is required for pre-rRNA processing in yeast. RNA 4, 1610-1622.
    • (1998) RNA , vol.4 , pp. 1610-1622
    • Peculis, B.A.1    Greer, C.L.2
  • 32
    • 0031773680 scopus 로고    scopus 로고
    • Modeltest: Testing the model of DNA substitution
    • Posada, D., Crandall, K.A., 1998. Modeltest: testing the model of DNA substitution. Bioinformatics 14, 817-818.
    • (1998) Bioinformatics , vol.14 , pp. 817-818
    • Posada, D.1    Crandall, K.A.2
  • 33
    • 0033850416 scopus 로고    scopus 로고
    • Utility of the mitochondrial cytochrome oxidase II gene for resolving relationships among black flies (Diptera:Simuliidae)
    • Pruess, K.P., Adams, B.J., Parsons, T.J., Zhu, X., Powers, T.O., 2000. Utility of the mitochondrial cytochrome oxidase II gene for resolving relationships among black flies (Diptera:Simuliidae). Mol. Phylogenet. Evol. 16, 286-295.
    • (2000) Mol. Phylogenet. Evol. , vol.16 , pp. 286-295
    • Pruess, K.P.1    Adams, B.J.2    Parsons, T.J.3    Zhu, X.4    Powers, T.O.5
  • 34
    • 33748338982 scopus 로고    scopus 로고
    • Analysis of genetic variation in ribosomal DNA internal transcribed spacer and the NADH dehydrogenase subunit 4 mitochondrial genes of the onchocerciasis vector Simulium ochraceum
    • Rodriguez-Pérez, M.A., Núñez-Gonzalez, C.A., Lizarazo-Ortega, C., Sanchez-Varela, A., Wooten, M.C., Unnasch, T.R., 2006. Analysis of genetic variation in ribosomal DNA internal transcribed spacer and the NADH dehydrogenase subunit 4 mitochondrial genes of the onchocerciasis vector Simulium ochraceum. J. Med. Entomol. 43, 1-6.
    • (2006) J. Med. Entomol. , vol.43 , pp. 1-6
    • Rodriguez-Pérez, M.A.1    Núñez-Gonzalez, C.A.2    Lizarazo-Ortega, C.3    Sanchez-Varela, A.4    Wooten, M.C.5    Unnasch, T.R.6
  • 35
    • 0001331916 scopus 로고
    • Cytotaxonomy of black flies (Simuliidae)
    • Rothfels, K.H., 1979. Cytotaxonomy of black flies (Simuliidae). Annu. Rev. Entomol. 24, 507-539.
    • (1979) Annu. Rev. Entomol. , vol.24 , pp. 507-539
    • Rothfels, K.H.1
  • 37
    • 45949106434 scopus 로고    scopus 로고
    • A molecular revision of the taxonomic status of mermithid parasites of black flies from Quebec (Canada)
    • St-Onge, M., LaRue, B., Charpentier, G., 2008. A molecular revision of the taxonomic status of mermithid parasites of black flies from Quebec (Canada). J. Invertebr. Pathol. 98, 299-306.
    • (2008) J. Invertebr. Pathol. , vol.98 , pp. 299-306
    • St-Onge, M.1    Larue, B.2    Charpentier, G.3
  • 39
    • 0030061504 scopus 로고    scopus 로고
    • Intra-specific heterogeneity of the rDNA internal transcribed spacer in the Simulium damnosum (Diptera:Simuliidae) complex
    • Tang, J., Toè, L., Back, C., Unnasch, R., 1996. Intra-specific heterogeneity of the rDNA internal transcribed spacer in the Simulium damnosum (Diptera:Simuliidae) complex. Mol. Biol. Evol. 13, 244-252.
    • (1996) Mol. Biol. Evol. , vol.13 , pp. 244-252
    • Tang, J.1    Toè, L.2    Back, C.3    Unnasch, R.4
  • 41
    • 33749648462 scopus 로고    scopus 로고
    • Molecular phylogeny of black flies (Diptera:Simuliidae) from Thailand, using ITS2 rDNA
    • Thanwisai, A., Kuvangkadilok, C., Baimai, V., 2006. Molecular phylogeny of black flies (Diptera:Simuliidae) from Thailand, using ITS2 rDNA. Genetica 128, 177-204.
    • (2006) Genetica , vol.128 , pp. 177-204
    • Thanwisai, A.1    Kuvangkadilok, C.2    Baimai, V.3
  • 42
    • 0036580969 scopus 로고    scopus 로고
    • Investigation of the Aedes (Stegomya) flavopictus complex (Diptera: Culicidae) in Japan by sequence analysis of the internal transcribed spacers of ribosomal DNA
    • Toma, T., Miyagi, I., Crabtree, M.B., Miller, B.R., 2002. Investigation of the Aedes (Stegomya) flavopictus complex (Diptera: Culicidae) in Japan by sequence analysis of the internal transcribed spacers of ribosomal DNA. J. Med. Entomol. 39, 461-468.
    • (2002) J. Med. Entomol. , vol.39 , pp. 461-468
    • Toma, T.1    Miyagi, I.2    Crabtree, M.B.3    Miller, B.R.4
  • 43
    • 0029054535 scopus 로고
    • Evolutionary conserved structural elements are critical for processing of internal transcribed spacer 2 from Saccharomyces cerevisiae precursor ribosomal RNA
    • Van Nues, R.W., Rientjes, J.M.J., Morré, S.A., Mollee, E., Planta, R.J., 1995. Evolutionary conserved structural elements are critical for processing of internal transcribed spacer 2 from Saccharomyces cerevisiae precursor ribosomal RNA. J. Mol. Biol. 250, 24-36.
    • (1995) J. Mol. Biol. , vol.250 , pp. 24-36
    • Van Nues, R.W.1    Rientjes, J.M.J.2    Morré, S.A.3    Mollee, E.4    Planta, R.J.5
  • 44
    • 0003152118 scopus 로고
    • The black flies (Diptera:Simuliidae) of Ontario. Part II. Larval identification, with description and illustration
    • Wood, D.M., Peterson, B.V., Davies, D.M., Gyorkos, H., 1963. The black flies (Diptera:Simuliidae) of Ontario. Part II. Larval identification, with description and illustration. Proc. Entomol. Soc. Ont. 93, 99-129.
    • (1963) Proc. Entomol. Soc. Ont. , vol.93 , pp. 99-129
    • Wood, D.M.1    Peterson, B.V.2    Davies, D.M.3    Gyorkos, H.4
  • 45
    • 0345832215 scopus 로고    scopus 로고
    • The advantages of the ITS2 region of the nuclear rDNA cistron for analysis of phylogenetic relationships of insects: A Drosophila example
    • Young, I., Coleman, A.W., 2004. The advantages of the ITS2 region of the nuclear rDNA cistron for analysis of phylogenetic relationships of insects: a Drosophila example. Mol. Phylogenet. Evol. 30, 236-242.
    • (2004) Mol. Phylogenet. Evol. , vol.30 , pp. 236-242
    • Young, I.1    Coleman, A.W.2
  • 46
    • 0042121256 scopus 로고    scopus 로고
    • Mfold web server for nucleic acid folding and hybridization prediction
    • Zuker, M., 2003. Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res. 13, 3406-3415.
    • (2003) Nucleic Acids Res , vol.13 , pp. 3406-3415
    • Zuker, M.1


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