Population genetic structure of a rare high-elevation black fly, Metacnephia coloradensis, occupying Colorado lake outlet streams

Freshwater Biology

Volumn 51, Issue 12, 2006, Pages 2240-2251

  Finn, Debra S ^a,c   Adler, Peter H ^b  

^a Department of Environmental and Radiological Health Sciences   (United States)

^b CLEMSON UNIVERSITY   (United States)

^c OREGON STATE UNIVERSITY   (United States)

Author keywords

Allopatric fragmentation; Alpine streams; Gene flow; Phylogeography; Simuliidae

Indexed keywords

ALLOPATRY; CLADISTICS; CLIMATE CHANGE; FLY; GENE FLOW; GENETIC DRIFT; GENETIC ISOLATION; GENETIC STRUCTURE; GEOGRAPHICAL VARIATION; LIFE HISTORY TRAIT; POPULATION STRUCTURE; RARE SPECIES;

COLORADO; NORTH AMERICA; UNITED STATES;

METACNEPHIA; PROSIMULIUM NEOMACROPYGA; SIMULIIDAE; SIMULIUM NIGRICOXUM;

EID: 33750838592     PISSN: 00465070     EISSN: 13652427     Source Type: Journal    
DOI: 10.1111/j.1365-2427.2006.01647.x     Document Type: Article

References (49)

1. Adler P.H., Currie D.C. & Wood D.M. (2004) The Black Flies (Simuliidae) of North America. Cornell University Press, Ithaca, NY.
2. Baron J.S., Rueth H.M., Wolfe A.M., Nydick K.R., Allstott E.J., Minear J.T. & Moraska B. (2000) Ecosystem responses to nitrogen deposition in the Colorado Front Range. Ecosystems, 3, 352-368.
3. Black W.C.I. & DuTeau N.M. (1997) RAPD-PCR and SSCP analysis for insect population genetic studies. In: The Molecular Biology of Insect Disease Vectors: A Methods Manual (Eds J. Crampton, C.B. Beard & C. Louis), pp. 361-373. Chapman and Hall, New York.
4. Bohonak A.J. (1999) Dispersal, gene flow, and population structure. Quarterly Review of Biology, 74, 21-45.
5. Bohonak A.J. (2002) IBD (Isolation by Distance): a program for analyses of isolation by distance. Journal of Heredity, 93, 153-154.
6. Bushnell J.H., Foster S.Q. & Wahle B.M. (1987) Annotated inventory of invertebrate populations of an alpine lake and stream chain in Colorado. Great Basin Naturalist, 47, 500-511.
7. Chakravarty G., Redkar A. & Mittra I. (1996) A comparative study of detection of p53 mutations in human breast cancer by flow cytometry, single-strand conformation polymorphism and genomic sequencing. British Journal of Cancer, 74, 1181-1187.
8. Clement M., Posada D. & Crandall K.A. (2000) TCS: a computer program to estimate gene genealogies. Molecular Ecology, 9, 1657-1660.
9. Crandall K.A. & Templeton A.R. (1993) Empirical tests of some predictions from coalescent theory with applications to intraspecific phylogeny reconstruction. Genetics, 134, 959-969.
10. DeChaine E.G. & Martin A.P. (2004) Historic cycles of fragmentation and expansion in Parnassius smintheus (Papilionidae) inferred using mitochondrial DNA. Evolution, 58, 113-127.
11. Downes J.A. (1965) Adaptations of insects in the arctic. Review of Entomology, 10, 257-274.
12. Elias S.A. (1996) The Ice-age History of National Parks in the Rocky Mountains. Smithsonian Institution Press, Washington, DC.
13. Finn D.S., Theobald D.M., Black W.C. IV & Poff N.L. (2006) Spatial population genetic structure and limited dispersal in a Rocky Mountain alpine stream insect. Molecular Ecology, doi: 10.1111/j.1365-294x.2006.03034.x.
14. Garnier S., Alibert P., Audiot P., Prieur B. & Rasplus J.Y. (2004) Isolation by distance and sharp discontinuities in gene frequencies: implications for the phylogeography of an alpine insect species, Carabus solieri. Molecular Ecology, 13, 1883-1897.
15. Hall T.A. (1999) BioEdit: a user-friendly biological sequence alignment editing and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series, 41, 95-98.
16. Hewitt G. (2000) The genetic legacy of the Quaternary ice ages. Nature, 405, 907-913.
17. Hiss R.H., Norris D.E., Dietrich C.H., Whitcomb R.F., West D.F., Bosio C.F., Kambhampati S., Piesman J., Antolin M.F. & Black W.C. (1994) Molecular taxonomy using single-strand conformation polymorphism (SSCP) analysis of mitochondrial ribosomal DNA genes. Insect Molecular Biology, 3, 171-182.
18. Hughes J.M., Hillyer M. & Bunn S.E. (2003) Small-scale patterns of genetic variation in the mayfly Bungona narilla (Ephemeroptera: Baetidae) in rainforest streams, south-east Queensland. Freshwater Biology, 48, 709-717.
19. Hughes J.M., Mather P.B., Sheldon A.L. & Allendorf F.W. (1999) Genetic structure of the stonefly, Yoraperla brevis, populations: the extent of gene flow among adjacent montane streams. Freshwater Biology, 41, 63-72.
20. Kelly L.C., Rundle S.D. & Bilton D.T. (2002) Genetic population structure and dispersal in Atlantic island caddisflies. Freshwater Biology, 47, 1642-1650.
21. Knowles L.L. (2001) Did the Pleistocene glaciations promote divergence? Tests of explicit refugial models in montane grasshoppers. Molecular Ecology, 10, 691-701.
22. Knowles L.L. & Maddison W.P. (2002) Statistical phylogeography. Molecular Ecology, 11, 2623-2635.
23. Kumar S., Tamura K. & Nei M. (2004) MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Briefings in Bioinformatics, 5, 150-163.
24. Lunt D.H., Zhang D.-X., Szymura J.M. & Hewitt G.M. (1996) The insect cytochrome oxidase I gene: evolutionary patterns and conserved primers for phylogenetic studies. Insect Molecular Biology, 5, 153-165.
25. Miller M.P., Blinn D.W. & Keim P. (2002) Correlations between observed dispersal capabilities and patterns of genetic differentiation in populations of four aquatic insect species from the Arizona White Mountains, U.S.A. Freshwater Biology, 47, 1660-1673.
26. Neigel J.E. (1997) A comparison of alternative strategies for estimating gene flow from genetic markers. Annual Review of Ecology and Systematics, 28, 105-128.
27. Orita M., Iwahana H., Kanazawa H., Hayashi K. & Sekiya T. (1989) Detection of polymorphisms of human DNA by gel electrophoresis as single-strand conformation polymorphisms. Proceedings of the National Academy of Sciences, 86, 2766-2770.
28. Peterson B.V. & Kondratieff B.C. (1995) The black flies (Diptera: Simuliidae) of Colorado: an annotated list with keys, illustrations and descriptions of three new species. Memoirs of the American Entomological Society, 42, 1-121.
29. Posada D. & Crandall K.A. (2001) Intraspecific gene genealogies: trees grafting into networks. Trends in Ecology & Evolution, 16, 37-45.
30. Posada D., Crandall K.A. & Templeton A.R. (2000) GeoDis: a program for the cladistic nested analysis of the geographical distribution of genetic haplotypes. Molecular Ecology, 9, 487-488.
31. Rabinowitz D. (1981) Seven forms of rarity. In: The Biological Aspects of Rare Plant Conservation (Ed. H. Synge), pp. 205-217. Wiley, Chichester.
32. Roff D.A. (1990) The evolution of flightlessness in insects. Ecological Monographs, 60, 389-421.
33. Schneider S., Roessli D. & Excoffier L. (2000) Arlequin ver. 2.000: A Software for Population Genetics Data Analysis. Genetics and Biometry Laboratory, University of Geneva, Switzerland.
34. Slatkin M. (1993) Isolation by distance in equilibrium and non-equilibrium populations. Evolution, 47, 264-279.
35. Slatkin M. (1995) A measure of population subdivision based on microsatellite allele frequencies. Genetics, 139, 457-462.
36. Smith C.I. & Farrell B.D. (2005) Phylogeography of the longhorn cactus beetle Moneilema appressum LeConte (Coleoptera: Cerambycidae): was the differentiation of the Madrean sky islands driven by Pleistocene climate changes? Molecular Ecology, 14, 3049-3065.
37. Stein B.A. & Flack S.R. (1997) 1997 Species Report Card: The State of U.S. Plants and Animals. The Nature Conservancy, Arlington, VA.
38. Sunnucks P., Wilson A.C.C., Beheregaray L.B., Zenger K., French J. & Taylor A.C. (2000) SSCP is not so difficult: the application and utility of single-stranded conformation polymorphism in evolutionary biology and molecular ecology. Molecular Ecology, 9, 1699-1710.
39. Templeton A.R. (2004) Statistical phylogeography: methods of evaluating and minimizing inference errors. Molecular Ecology, 13, 789-809.
40. Templeton A.R., Boerwinkle E. & Sing C.F. (1987) A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping 1. Basic theory and an analysis of alcohol dehydrogenase activity in Drosophila. Genetics, 117, 343-351.
41. Templeton A.R., Crandall K.A. & Sing C.F. (1992) A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping and DNA sequence data 3. Cladogram estimation. Genetics, 132, 619-633.
42. Weir B.S. & Cockerham C.C. (1984) Estimating F-statistics for the analysis of population structure. Evolution, 38, 1358-1370.
43. Welker J.M., Bowman W.D. & Seastedt T.R. (2001) Environmental change and future directions in alpine research. In: Structure and Function of an Alpine Ecosystem: Niwot Ridge, Colorado (Eds W.D. Bowman & T.R. Seastedt), pp. 304-322. Oxford University Press, New York.
44. Wiens J.A. (2001) The landscape context of dispersal. In: Dispersal (Eds J. Clobert, E. Danchin, A.A. Dhondt & J.D. Nichols), pp. 96-109. Oxford University Press, Oxford.
45. Wilcock H.R., Nichols R.A. & Hildrew A.G. (2003) Genetic population structure and neighbourhood population size estimates of the caddisfly Plectrocnemia conspersa. Freshwater Biology, 48, 1813-1824.
46. Williams M., Dunkerley D., De Deckker P., Kershaw P. & Chappell J. (1998) Quaternary Environments. Arnold, London.
47. Wishart M.J. & Hughes J.M. (2001) Exploring patterns of population subdivision in the net-winged midge, Elporia barnardi (Diptera: Blephariceridae), in mountain streams of the southwestern cape, South Africa. Freshwater Biology, 46, 479-490.
48. Wishart M.J. & Hughes J.M. (2003) Genetic population structure of the net-winged midge, Elporia barnardi (Diptera: Blephariceridae) in streams of the southwestern Cape, South Africa: implications for dispersal. Freshwater Biology, 48, 28-38.
49. Wright S. (1951) The genetical structure of populations. Annals of Eugenics, 15, 323-354.