메뉴 건너뛰기




Volumn 105, Issue 2, 2010, Pages 250-259

An unbiased sensitivity analysis reveals important parameters controlling periodicity of circadian clock

Author keywords

Circadian clock; Genetic regulatory networks; Mathematical model; Parameter estimation; Sensitivity analysis; Systems biology

Indexed keywords

BIOCHEMICAL MODEL; BIOCHEMICAL SYSTEMS; CIRCADIAN CLOCK; COMPUTATIONAL APPROACH; GENETIC REGULATORY NETWORKS; IN-VIVO; KINETIC MODELS; MODEL PARAMETERS; PARAMETRIC SENSITIVITY; RELATIVE IMPORTANCE; SENSITIVITY OF PARAMETERS; UNKNOWN VALUES;

EID: 74849130143     PISSN: 00063592     EISSN: 10970290     Source Type: Journal    
DOI: 10.1002/bit.22540     Document Type: Article
Times cited : (8)

References (32)
  • 1
    • 0033593306 scopus 로고    scopus 로고
    • Molecular bases for circadian clocks
    • Dunlap JC. 1999. Molecular bases for circadian clocks. Cell 96(2):271-290.
    • (1999) Cell , vol.96 , Issue.2 , pp. 271-290
    • Dunlap, J.C.1
  • 2
    • 0037079015 scopus 로고    scopus 로고
    • Computational approaches to cellular rhythms
    • Goldbeter A. 2002. Computational approaches to cellular rhythms. Nature 420(6912):238-245.
    • (2002) Nature , vol.420 , Issue.6912 , pp. 238-245
    • Goldbeter, A.1
  • 3
    • 0037079034 scopus 로고    scopus 로고
    • The F-box protein Slimb controls the levels of clock proteins Period and Timeless
    • Grima B, Lamouroux A, Chelot E, Papin C, Limbourg-Bouchon B, Rouyer F. 2002. The F-box protein Slimb controls the levels of clock proteins Period and Timeless. Nature 420(6912):178-182.
    • (2002) Nature , vol.420 , Issue.6912 , pp. 178-182
    • Grima, B.1    Lamouroux, A.2    Chelot, E.3    Papin, C.4    Limbourg-Bouchon, B.5    Rouyer, F.6
  • 4
    • 0030989154 scopus 로고    scopus 로고
    • A circadian enhancer mediates PER-dependent mRNA cycling in Drosophila melanogaster
    • Hao H, Allen DL, Hardin PE. 1997. A circadian enhancer mediates PER-dependent mRNA cycling in Drosophila melanogaster. Mol Cell Biol 17(7):3687-3693.
    • (1997) Mol Cell Biol , vol.17 , Issue.7 , pp. 3687-3693
    • Hao, H.1    Allen, D.L.2    Hardin, P.E.3
  • 5
    • 24044444531 scopus 로고    scopus 로고
    • The circadian timekeeping system of Drosophila
    • Hardin PE. 2005. The circadian timekeeping system of Drosophila. Curr Biol 15(17):714-722.
    • (2005) Curr Biol , vol.15 , Issue.17 , pp. 714-722
    • Hardin, P.E.1
  • 6
    • 0026287765 scopus 로고
    • The kinetics of mammalian gene expression
    • Hargrove JL, Hulsey MG, Beale EG. 1991. The kinetics of mammalian gene expression. BioEssays 13(12):667-674.
    • (1991) BioEssays , vol.13 , Issue.12 , pp. 667-674
    • Hargrove, J.L.1    Hulsey, M.G.2    Beale, E.G.3
  • 7
    • 0019392712 scopus 로고
    • An approach to the preliminary analysis of environmental system
    • Hornberger GM, Pear RC. 1981. An approach to the preliminary analysis of environmental system. J Environ Manag 12:7-18.
    • (1981) J Environ Manag , vol.12 , pp. 7-18
    • Hornberger, G.M.1    Pear, R.C.2
  • 8
    • 0028722008 scopus 로고
    • An ultrashort clock mutation at the period locus of Drosophila melanogaster that reveals some new features of the fly's circadian system
    • Konopka RJ, Hamblen-Coyle MJ, Jamison CF, Hall JC. 1994. An ultrashort clock mutation at the period locus of Drosophila melanogaster that reveals some new features of the fly's circadian system. J Biol Rhythms 9(3-4):189-216.
    • (1994) J Biol Rhythms , vol.9 , Issue.3-4 , pp. 189-216
    • Konopka, R.J.1    Hamblen-Coyle, M.J.2    Jamison, C.F.3    Hall, J.C.4
  • 9
    • 74849140879 scopus 로고    scopus 로고
    • Modelling circadian rhythms in Drosophila and investigation of VRI and PDP1 feedback loops using a new mathematical model
    • Kulasiri D, Xie Z. 2008. Modelling circadian rhythms in Drosophila and investigation of VRI and PDP1 feedback loops using a new mathematical model. Math Model Nat Phenom 3(2):1-26.
    • (2008) Math Model Nat Phenom , vol.3 , Issue.2 , pp. 1-26
    • Kulasiri, D.1    Xie, Z.2
  • 10
    • 85005976913 scopus 로고    scopus 로고
    • A review of systems biology perspective on genetic regulatory networks with examples
    • Kulasiri D, Nguyen L, Samarasinghe S, Xie Z. 2008. A review of systems biology perspective on genetic regulatory networks with examples. Curr Bioinformatics 3:197-225.
    • (2008) Curr Bioinformatics , vol.3 , pp. 197-225
    • Kulasiri, D.1    Nguyen, L.2    Samarasinghe, S.3    Xie, Z.4
  • 11
    • 0033984612 scopus 로고    scopus 로고
    • Modeling the molecular regulatory mechanism of circadian rhythms in Drosophila
    • Leloup JC, Goldbeter A. 2000. Modeling the molecular regulatory mechanism of circadian rhythms in Drosophila. Bioessays 22(1):84-93.
    • (2000) Bioessays , vol.22 , Issue.1 , pp. 84-93
    • Leloup, J.C.1    Goldbeter, A.2
  • 12
    • 0037795575 scopus 로고    scopus 로고
    • Toward a detailed computational model for the mammalian circadian clock
    • Leloup J-C, Goldbeter A. 2003. Toward a detailed computational model for the mammalian circadian clock. Proc Natl Acad Sci USA 100(12):7051-7056.
    • (2003) Proc Natl Acad Sci USA , vol.100 , Issue.12 , pp. 7051-7056
    • Leloup, J.-C.1    Goldbeter, A.2
  • 14
    • 0018468345 scopus 로고
    • A comparison of three methods for selecting values of input variables in the analysis of output from a computer code
    • McKay MD, Beckman RJ, Conover WJ. 1979. A comparison of three methods for selecting values of input variables in the analysis of output from a computer code. Technometrics 21(2):239-245.
    • (1979) Technometrics , vol.21 , Issue.2 , pp. 239-245
    • McKay, M.D.1    Beckman, R.J.2    Conover, W.J.3
  • 15
    • 0032406131 scopus 로고    scopus 로고
    • Non-linear optimization of biochemical pathways: Applications to metabolic engineering and parameter estimation
    • Mendes P, Kell D. 1998. Non-linear optimization of biochemical pathways: Applications to metabolic engineering and parameter estimation. Bioinformatics (Oxford, England) 14(10):869-883.
    • (1998) Bioinformatics (Oxford, England) , vol.14 , Issue.10 , pp. 869-883
    • Mendes, P.1    Kell, D.2
  • 16
    • 0242574982 scopus 로고    scopus 로고
    • Parameter estimation in biochemical pathways: A comparison of global optimization methods
    • Moles CG, Mendes P, Banga JR. 2003. Parameter estimation in biochemical pathways: A comparison of global optimization methods. Genome Res 13(11):2467-2474.
    • (2003) Genome Res , vol.13 , Issue.11 , pp. 2467-2474
    • Moles, C.G.1    Mendes, P.2    Banga, J.R.3
  • 17
    • 27744575740 scopus 로고    scopus 로고
    • Circadian rhythms: Clock coordination
    • Nitabach MN. 2005. Circadian rhythms: Clock coordination. Nature 438(7065):173-175.
    • (2005) Nature , vol.438 , Issue.7065 , pp. 173-175
    • Nitabach, M.N.1
  • 18
    • 74849121919 scopus 로고    scopus 로고
    • Press WH. 1997. Numerical recipes in C: The art of scientific computing. Cambridge; New York: Cambridge University Press. xxvi, 994 p.
    • Press WH. 1997. Numerical recipes in C: The art of scientific computing. Cambridge; New York: Cambridge University Press. xxvi, 994 p.
  • 19
    • 46249083801 scopus 로고    scopus 로고
    • Mapping global sensitivity of cellular network dynamics: Sensitivity heat maps and a global summation law
    • Rand DA. Mapping global sensitivity of cellular network dynamics: Sensitivity heat maps and a global summation law. J R Soc Interface 5(Suppl 1):S59-S69.
    • J R Soc Interface , vol.5 , Issue.SUPPL. 1
    • Rand, D.A.1
  • 20
    • 0033782507 scopus 로고    scopus 로고
    • Isolation and analysis of six timeless alleles that cause short- or long-period circadian rhythms in Drosophila
    • Rothenfluh A, Abodeely M, Price JL, Young MW. 2000. Isolation and analysis of six timeless alleles that cause short- or long-period circadian rhythms in Drosophila. Genetics 156(2):665-675.
    • (2000) Genetics , vol.156 , Issue.2 , pp. 665-675
    • Rothenfluh, A.1    Abodeely, M.2    Price, J.L.3    Young, M.W.4
  • 21
    • 0028838668 scopus 로고
    • Rhythmic expression of timeless: A basis for promoting circadian cycles in period gene autoregulation
    • Sehgal A, Rothenfluh-Hilfiker A, Hunter-Ensor M, Chen Y, Myers MP, Young MW. 1995. Rhythmic expression of timeless: A basis for promoting circadian cycles in period gene autoregulation. Science 270(5237):808-810.
    • (1995) Science , vol.270 , Issue.5237 , pp. 808-810
    • Sehgal, A.1    Rothenfluh-Hilfiker, A.2    Hunter-Ensor, M.3    Chen, Y.4    Myers, M.P.5    Young, M.W.6
  • 22
    • 0035449932 scopus 로고    scopus 로고
    • Modeling circadian oscillations with interlocking positive and negative feedback loops
    • Smolen P, Baxter DA, Byrne JH. 2001. Modeling circadian oscillations with interlocking positive and negative feedback loops. J Neurosci 21(17): 6644-6656.
    • (2001) J Neurosci , vol.21 , Issue.17 , pp. 6644-6656
    • Smolen, P.1    Baxter, D.A.2    Byrne, J.H.3
  • 23
    • 2142811057 scopus 로고    scopus 로고
    • Simulation of Drosophila circadian oscillations, mutations, and light responses by a model with VRI, PDP-1, and CLK
    • Smolen P, Hardin PE, Lo BS, Baxter DA, Byrne JH. 2004. Simulation of Drosophila circadian oscillations, mutations, and light responses by a model with VRI, PDP-1, and CLK. Biophys J 86(5):2786-2802.
    • (2004) Biophys J , vol.86 , Issue.5 , pp. 2786-2802
    • Smolen, P.1    Hardin, P.E.2    Lo, B.S.3    Baxter, D.A.4    Byrne, J.H.5
  • 24
    • 4444322221 scopus 로고    scopus 로고
    • Robustness properties of circadian clock architectures
    • Stelling J, Gilles ED, Doyle FJ III. 2004. Robustness properties of circadian clock architectures. Proc Natl Acad Sci USA 101(36):13210-13215.
    • (2004) Proc Natl Acad Sci USA , vol.101 , Issue.36 , pp. 13210-13215
    • Stelling, J.1    Gilles, E.D.2    Doyle III, F.J.3
  • 25
    • 74849128797 scopus 로고    scopus 로고
    • Stephens MA. 1970. Use of the Kolmogorov-Smirnov, Cramer-Von Mises and related statistics without extensive tables. J R Stat Soc [Ser B] 32(1):115-122.
    • Stephens MA. 1970. Use of the Kolmogorov-Smirnov, Cramer-Von Mises and related statistics without extensive tables. J R Stat Soc [Ser B] 32(1):115-122.
  • 26
    • 0032758081 scopus 로고    scopus 로고
    • A simple model of circadian rhythms based on dimerization and proteolysis of PER and TIM
    • Tyson JJ, Hong CI, Thron CD, Novak B. 1999. A simple model of circadian rhythms based on dimerization and proteolysis of PER and TIM. Biophys J 77(5):2411-2417.
    • (1999) Biophys J , vol.77 , Issue.5 , pp. 2411-2417
    • Tyson, J.J.1    Hong, C.I.2    Thron, C.D.3    Novak, B.4
  • 27
    • 0036037385 scopus 로고    scopus 로고
    • Intercellular coupling mechanism for synchronized and noise-resistant circadian oscillators
    • Ueda H, Hirose K, Iino M. 2002. Intercellular coupling mechanism for synchronized and noise-resistant circadian oscillators. J Theor Biol 216(4):501-512.
    • (2002) J Theor Biol , vol.216 , Issue.4 , pp. 501-512
    • Ueda, H.1    Hirose, K.2    Iino, M.3
  • 29
    • 74849120441 scopus 로고    scopus 로고
    • Varma A, Morbidelli M, Wu H. 1999. Parametric sensitivity in chemical systems. Cambridge: Cambridge University Press. xvi, 342 p.
    • Varma A, Morbidelli M, Wu H. 1999. Parametric sensitivity in chemical systems. Cambridge: Cambridge University Press. xvi, 342 p.
  • 31
    • 33847070037 scopus 로고    scopus 로고
    • Modelling of circadian rhythms in Drosophila incorporating the interlocked PER/TIM and VRI/PDP1 feedback loops
    • Xie Z, Kulasiri D. 2007. Modelling of circadian rhythms in Drosophila incorporating the interlocked PER/TIM and VRI/PDP1 feedback loops. J Theor Biol 245(2):290-304.
    • (2007) J Theor Biol , vol.245 , Issue.2 , pp. 290-304
    • Xie, Z.1    Kulasiri, D.2
  • 32
    • 0035458732 scopus 로고    scopus 로고
    • Time zones: A comparative genetics of circadian clocks
    • Young MW, Kay SA. 2001. Time zones: A comparative genetics of circadian clocks. Nat Rev Genet 2(9):702-715.
    • (2001) Nat Rev Genet , vol.2 , Issue.9 , pp. 702-715
    • Young, M.W.1    Kay, S.A.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.