Bioaugmentation of a sequencing batch reactor with Pseudomonas putida ONBA-17, and its impact on reactor bacterial communities

Journal of Hazardous Materials

Volumn 176, Issue 1-3, 2010, Pages 20-26

  Yu, Fang Bo ^a,b   Ali, Shinawar Waseem ^b   Guan, Li Bo ^a,b   Li, Shun Peng ^b   Zhou, Shan ^a  

^a ZHEJIANG A F UNIVERSITY   (China)

^b NANJING AGRICULTURAL UNIVERSITY   (China)

Author keywords

Bioaugmentation; DGGE; Loading shock; o Nitrobenzaldehyde; Pseudomonas putida

Indexed keywords

16S RRNA GENE; BACTERIAL COMMUNITY; BACTERIAL STRAINS; BIOAUGMENTATION; BIOAUGMENTED REACTORS; CHEMICAL OXYGEN DEMAND REMOVALS; DENATURING GRADIENT GEL ELECTROPHORESIS; MICROBIAL COMMUNITIES; NITROBENZALDEHYDE; PHYLOGENETIC ANALYSIS; PROTEOBACTERIA; PSEUDOMONAS PUTIDA; SEQUENCING BATCH REACTORS; STARTUP TIME; SYNTHETIC WASTE WATER; SYSTEMATIC STUDY; TARGET COMPOUND;

ALDEHYDES; BACTERIOLOGY; BATCH REACTORS; BIOLOGICAL WATER TREATMENT; CHEMICAL OXYGEN DEMAND; DEGRADATION; ELECTROPHORESIS; OXYGEN; RNA; WASTEWATER; WASTEWATER TREATMENT;

BACTERIA;

2 NITROBENZALDEHYDE; ALDEHYDE DERIVATIVE; RNA 16S; UNCLASSIFIED DRUG;

BACTERIUM; BIOREACTOR; CHEMICAL OXYGEN DEMAND; CHROMOSOME; DEGRADATION; ELECTROKINESIS; MICROORGANISM; RNA; WASTEWATER;

ARTICLE; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATE; BIOREMEDIATION; CHEMICAL OXYGEN DEMAND; CONTROLLED STUDY; DENATURING GRADIENT GEL ELECTROPHORESIS; GENE SEQUENCE; MICROBIAL COMMUNITY; NONHUMAN; NUCLEOTIDE SEQUENCE; PSEUDOMONAS PUTIDA; SEQUENCING BATCH REACTOR; WASTE WATER MANAGEMENT;

BENZALDEHYDES; BIODEGRADATION, ENVIRONMENTAL; BIOREACTORS; PROTEOBACTERIA; PSEUDOMONAS PUTIDA; SEWAGE; WATER POLLUTANTS, CHEMICAL;

BACTERIA (MICROORGANISMS); GAMMAPROTEOBACTERIA; PROTEOBACTERIA; PSEUDOMONAS PUTIDA;

EID: 74449088615     PISSN: 03043894     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jhazmat.2009.06.006     Document Type: Article

References (45)

1. Yu F.-B., Guan L.-B., and Zhou S. Isolation and preliminary characterization of a o-nitrobenzaldehyde-degrading Alcaligenes sp. ND1. Braz. J. Microbiol. 39 (2008) 776-779
2. Silveira E., Marques P.P., Silva S.S., Lima-Filho J.L., Porto A.L.F., and Tambourgi E.B. Selection of Pseudomonas for industrial textile dyes decolourization. Int. Biodeter. Biodegr. 63 (2009) 230-235
3. Ivanov V., Wang X.-H., Tay S.T.-L., and Tay J.-H. Bioaugmentation and enhanced formation of microbial granules used in aerobic wastewater treatment. Appl. Microbiol. Biot. 70 (2006) 374-381
4. Venkata Mohan S., Christina Falkentoft Y., Venkata N., McSwain Sturm B.S., Pierre W., Wilderer P.A., Stefan W., and Martina H. Bioaugmentation of microbial communities in laboratory and pilot scale sequencing batch biofilm reactors using the TOL plasmid. Bioresour. Technol. 100 (2009) 1746-1753
5. Hajji K.T., Lepine F.F., Bisaillon J.-G., Beaudet R., Hawari J., and Guiot S.R. Effects of bioaugmentation strategies in UASB reactors with a methanogenic consortium for removal of phenolic compounds. Bioeng. Biotechnol. 67 (2000) 417-423
6. Boon N., Goris J., de Vos P., Verstraete W., and Top E.M. Bioaugmentation of activated sludge by an indigenous 3-chloroaniline-degrading Comamonas testosteroni strain, I2gfp. Appl. Environ. Microbiol. 66 (2000) 2906-2913
7. Belia E., and Smith P.G. The bioaugmentation of sequencing batch reactor sludge for biological phosphate removal. Water Sci. Technol. 35 (1996) 19-26
8. Nüßlein K., Maris D., Timmis K., and Dwyer D.F. Expression and transfer of engineered catabolic pathways harbored by Pseudomonas spp. introduced into activated sludge microcosms. Appl. Environ. Microbiol. 58 (1992) 3380-3386
9. Fromin N., Hamelin J., Tarnawski S., Roesti D., Jourdain-Miserez K., and Forestier N. Statistical analysis of denaturing gel electrophoresis (DGE) fingerprinting patterns. Environ. Microbiol. 4 (2002) 634-643
10. Muyzer G., de Waal E.C., and Uitterlinden A.G. Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl. Environ. Microbiol. 59 (1993) 695-700
11. Muyzer G., and Smalla K. Application of denaturing gradient gel electrophoresis (DGGE) and temperature gradient gel electrophoresis (TGGE) in microbial ecology. Antonie Van Leeuwenhoek 73 (1998) 127-141
12. Torsvik V., and Ovreas L. Microbial diversity and function in soil: from genes to ecosystems. Curr. Opin. Microbiol. 5 (2002) 240-245
13. Krave A.S., Lin B., Braster M., Laverman A.M., van Straalen N.M., Röling W.F.M., and van Verseveld H.W. Stratification and seasonal stability of diverse bacterial communities in a Pinus merkusii (pine) forest soil in central Java, Indonesia. Environ. Microbiol. 4 (2002) 361-373
14. Liu B.B., Zhang F., Feng X.X., Liu Y.D., Yan X., and Zhang X.J. Thauera and Azoarcus as functionally important genera in a denitrifying quinoline-removal bioreactor as revealed by microbial community structure comparison. FEMS Microbiol. Ecol. 55 (2006) 274-286
15. Röling W.F.M., van Breukelen B.M., Braster M., Lin B., and van Verseveld H.W. Relationships between microbial community structure and hydrochemistry in a landfill leachate-polluted aquifer. Appl. Environ. Microbiol. 67 (2001) 4619-4629
16. Yu F.-B., Shen B., and Li S.-P. Isolation and characterization of Pseudomonas sp. strain ONBA-17 degrading o-nitrobenzaldehyde. Curr. Microbiol. 53 (2006) 457-461
17. Sambrook J., Fritsch E.F., and Maniatis T. Molecular Cloning: a Laboratory Manual. 3rd ed. (2001), Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
18. F.-B. Yu, Isolation, characterization and bioaugmentation study of an efficient o-nitrobenzaldehyde degrading strain Pseudomonas putida ONBA-17, Ph. D. dissertation, Nanjing Agricultural University, Jiangsu, China, 2007.
19. Hoang T.T., Karkhoff-Schweizer R.R., Kutchma A.J., and Schweizer H.P. A broad-host-range Flp-FRT recombination system for site-specific excision of chromosomally-located DNA sequences: application for isolation of unmarked Pseudomonas aeruginosa mutants. Gene 212 (1998) 77-86
20. Bomchil N., Watnick P., and Kolter R. Identification and characterization of a Vibrio cholerae gene, mbaA, involved in maintenance of biofilm architecture. J. Bacteriol. 185 (2003) 1384-1390
21. Powel B., Mergeay M., and Christofi N. Transfer of broad host-range plasmids to sulphate-reducing bacteria. FEMS Microbiol. Lett. 59 (2006) 269-273
22. Mesa M.M., Macías M., Cantero D., and Barja F. Use of the direct epifluorescent filter technique for the enumeration of viable and total acetic acid bacteria from vinegar fermentation. J. Fluoresc. 13 (2003) 261-265
23. Kuroda A., Takiguchi N., Gotanda T., Nomura K., Kato J., Ikeda T., and Ohtake H. A simple method to release polyphosphate from activated sludge for phosphorus reuse and recycling. Biotechnol. Bioeng. 78 (2002) 333-338
24. APHA. Standard Methods for the Examination of Water and Wastewater. 21st ed. (2005), American Public Health Association, Washington, D.C.
25. Griffiths R.I., Whiteley A.S., O'Donnell A.G., and Bailey M.J. Rapid method for coextraction of DNA and RNA from natural environments for analysis of ribosomal DNA- and rRNA-based microbial community composition. Appl. Environ. Microbiol. 66 (2000) 5488-5491
26. Zhang X.L., Yan X., Gao P.P., Wang L.H., Zhou Z.H., and Zhao L.P. Optimized sequence retrieval from single bands of temperature gradient gel electrophoresis profiles of the amplified 16S rDNA fragments from an activated sludge system. J. Microbiol. Methods 60 (2005) 1-11
27. McCaig A.E., Glover L.A., and Prosser J.I. Numerical analysis of grassland bacterial community structure under different land management regimens by using 16S ribosomal DNA sequence data and denaturing gradient gel electrophoresis banding patterns. Appl. Environ. Microbiol. 67 (2001) 4554-4559
28. Cole J.R., Chai B., Marsh T.L., Farris R.J., Wang Q., and Kulam S.A. The Ribosomal Database Project (RDP-II): previewing a new autoaligner that allows regular updates and the new prokaryotic taxonomy. Nucleic Acids Res. 31 (2003) 442-443
29. Altschul S.F., Gish W., Miller W., Myers W., and Lipman D.J. Basic local alignment search tool. J. Mol. Biol. 215 (1990) 403-410
30. Bajpai P., and Margaritis A. Studies on the flocculation characteristics of Kluyveromyces marxianu. Biotechnol. Bioeng. 28 (2004) 283-287
31. Malik A., Sakamoto M., Hanazaki S., Osawa M., Suzuki T., Tochigi M., and Kakii K. Coaggregation among nonflocculation bacteria isolated from activated sludge. Appl. Environ. Microbiol. 69 (2003) 6056-6063
32. van der Meer J.R., Werlen J.R., Nishino C.S.F., and Spain J.C. Evolution of a pathway for chlorobenzene metabolism leads to natural attenuation in contaminated groundwater. Appl. Environ. Microbiol. 64 (1998) 4185-4193
33. Weber W.J.J., and Corseuil H.X. Inoculation of contaminated subsurface soils with enriched indigenous microbes to enhance bioremediation rates. Water Res. 28 (1994) 1407-1414
34. Tchelet R., Meckenstock R., Steinle P., and van der Meer J.R. Population dynamics of an introduced bacterium degrading chlorinated benzenes in a soil column and in sewage sludge. Biodegradation 10 (1999) 113-125
35. Eberl L., Schulze R., Ammendola A., Geisenberger O., Erhart R., and Sternberg C. Use of green fluorescent protein as a marker for ecological studies of activated sludge communities. FEMS Microbiol. Lett. 149 (1997) 77-83
36. Bossier P., and Verstraete W. Comamonas testosterone colony phenotype influences exopolysaccharide production and coaggregation with yeast cells. Appl. Environ. Microbiol. 62 (1996) 2687-2691
37. Qiu X., Wu L., Huang H., McDonel P.E., Palumbo A.V., Tiedje J.M., and Zhou J. Evaluation of PCR-generated chimeras, mutations, and heteroduplexes with 16S rRNA gene-based cloning. Appl. Environ. Microbiol. 67 (2001) 880-887
38. Ginige M.P., Hugenholtz P., Daims H., Wagner M., Keller J., and Blackall L.L. Use of stable-isotope probing, full-cycle rRNA analysis, and fluorescence in situ hybridization-microautoradiography to study a methanol-fed denitrifying microbial community. Appl. Environ. Microbiol. 70 (2004) 588-596
39. Lee N., Nielsen P.H., Andreasen K.H., Juretschko S., Nielsen J.L., Schleifer K.H., and Wagner M. Combination of fluorescence in situ hybridization and microautoradiography-a new tool for structure-function analyses in microbial ecology. Appl. Environ. Microbiol. 65 (1999) 1289-1297
40. Mahmood S., Paton G.I., and Prosser J.I. Cultivation-independent in situ molecular analysis of bacteria involved in degradation of pentachlorophenol in soil. Environ. Microbiol. 7 (2005) 1349-1360
41. Manefield M., Whiteley A.S., Griffiths R.I., and Bailey M.J. RNA stable isotope probing, a novel means of linking microbial community function to phylogeny. Appl. Environ. Microbiol. 68 (2002) 5367-5373
42. Bucheli-Witschel M., and Egli T. Environmental fate and microbial degradation of aminopolycarboxylic acids. FEMS Microbiol. Rev. 25 (2001) 69-106
43. Dejonghe W., Goris J., Dierickx A., de Dobbeleer V., Crul K., and de Vos P. Diversity of 3-chloroaniline and 3, 4-dichloroaniline degrading bacteria isolated from three different soils and involvement of their plasmids in chloroaniline degradation. FEMS Microbiol. Ecol. 42 (2002) 315-325
44. Lozada M., Itria R.F., Figuerola E.L.M., Babay P.A., Gettar R.T., de Tullio L.A., and Erijman L. Bacterial community shifts in nonylphenol polyethoxylates-enriched activated sludge. Water Res. 38 (2004) 2077-2086
45. Pruden A., Sedran M., Suidan M., and Venos A. Biodegradation of MTBE and BTEX in an aerobic fluidized bed reactor. Water Sci. Technol. 47 (2003) 123-128