CASPB results in context of previous experiments

Proteins: Structure, Function and Bioinformatics

Volumn 77, Issue SUPPL. 9, 2009, Pages 217-228

  Kryshtafovych, Andriy ^b   Fidelis, Krzysztof ^b   Moult, Jonn ^a  

^a UNIVERSITY OF MARYLAND BIOTECHNOLOGY INSTITUTE   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

CASP; Community wide experiment; Progress; Protein structure prediction

Indexed keywords

FLICE INHIBITORY PROTEIN; PROTEIN;

AUTOMATION; COMPARATIVE STUDY; COMPUTER PROGRAM; PRIORITY JOURNAL; PROTEIN DOMAIN; PROTEIN STRUCTURE, FUNCTION AND VARIABILITY; PROTEIN TARGETING; QUALITATIVE RESEARCH; QUALITY CONTROL; REVIEW; ARTICLE; BIOLOGY; CHEMICAL STRUCTURE; CHEMISTRY; METHODOLOGY; PROTEIN CONFORMATION; PROTEIN TERTIARY STRUCTURE; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS;

COMPUTATIONAL BIOLOGY; MODELS, MOLECULAR; PROTEIN CONFORMATION; PROTEIN STRUCTURE, TERTIARY; PROTEINS; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, PROTEIN;

EID: 74249097379     PISSN: 08873585     EISSN: 10970134     Source Type: Journal    
DOI: 10.1002/prot.22562     Document Type: Review

References (13)

1. Keedy D, Williams CJ, Arendall WB, III, Chen VB, Kaprál GJ, Gillespie RA, Zemla A, Richardson DC, Richardson JS. The other 90% of the protein: assessment beyond Cas for CASP8 templatebased models. Proteins 2009;77(Suppl 9):29-49.
2. Ben-David M, Noivirt O, Paz A, Prilusky J, Sussman J, Levy Y. Assessment, of CASP8 structure predictions for template free targets. Proteins 2009;77(Suppl 9):50-65.
3. Cozetto D, Kryshtafovych A, Fidelis K, Moult J, Rost B, Tramontano A. Evaluation of template-based models in CAS.P8 with standard measures. Proteins 2009;77(Suppl 9):18-28.
4. Kryshtafovych A, Fidelis K, Moult J. Progress from CASP6 to CASP7. Proteins 2007;69(Suppl 8):194-207.
5. Kryshtafovych A, Venciovas C, Fidelis K, Moult J. Progress over the first decade of CASP experiments. Proteins 2005;61 (Suppl 7):225-236. (Pubitemid 43069977)
6. Venciovas C, Zemla A, Fidelis K, Moult J. Assessment of progress over the CASP experiments. Proteins 2003;53(Suppl 6): 585-595.
7. Venciovas C, Zemla A, Fidelis K, Moult J. Comparison of performance in successive CASP experiments. Proteins 2001;Suppl 5: 163-170. (Pubitemid 34113180)
8. Lassmann T, Frings O, Sonnhammer EL. Kalign2: high-performance multiple alignment of protein and nucleotide sequences allowing external features. Nucleic Acids Res 2009;37:858-865.
9. Cozzetto D, Tramontano A. Relationship between multiple sequence alignments and quality of protein comparative models. Proteins 2005;58:151-157. (Pubitemid 39665626)
10. Larsson P, Wallner B, Lindahl E, Elofsson A. Using multiple templates to improve quality of homology models in automated homology modeling. Protein Sci 2008;17:990-1002. (Pubitemid 351749205)
11. Zemla A. LGA: a method for finding 3D similarities in protein structures. Nucleic Acids Res 2003;31:3370-3374. (Pubitemid 37442162)
12. Zemla A, Venciovas, Moult J, Fidelis K. Processing and evaluation of predictions in CASP4. Proteins 2001;Suppl 5:13-21. (Pubitemid 34113164)
13. Schwede T, Sali A, Honig B, Levitt M, Berman HM, Jones D, Brenner SE, Burley SK, Das R, Dokholyan NV, Dunbrack RL Jr, Fidelis K, Fiser A, Godzik A, Huang YJ, Humblet C, Jacobson MP, Joachimiak A, Krystek SR Jr, Kortemme T, Kryshtafovych A, Monteiione GT, Moult J, Murray D, Sanchez R, Sosnick TR, Standley DM, Stouch T, Vajda S, Vasquez M, Westbrook JD, Wilson IA. Outcome of a workshop on applications of protein models in biomedical research. Structure 2009;17:151-159.