Genomics and proteomics of deleted ovine CSN1S1*I

International Dairy Journal

Volumn 20, Issue 3, 2010, Pages 195-202

  Giambra, Isabella Jasmin ^a   Chianese, Lina ^b   Ferranti, Pasquale ^b   Erhardt, Georg ^a  

^a JUSTUS LIEBIG UNIVERSITY   (Germany)

^b UNIVERSITY OF NAPLES FEDERICO II   (Italy)

Author keywords

[No Author keywords available]

Indexed keywords

CODING SEQUENCES; GENETIC VARIANTS; GENOMICS; HAPLOTYPES; MATURE PROTEINS; MOLECULAR GENETICS; NUCLEOTIDE SUBSTITUTION; PROTEIN LEVEL; PROTEOMICS; QUANTITATIVE LEVEL; SPLICE DONORS;

AMINO ACIDS; MOLECULAR BIOLOGY; ORGANIC ACIDS; PHOSPHORYLATION; PROTEINS;

POLYMERASE CHAIN REACTION;

OVIS;

EID: 73449127915     PISSN: 09586946     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.idairyj.2009.09.005     Document Type: Article

References (47)

1. Boettcher P.J., Caroli A., Stella A., Chessa S., Budelli E., Canavesi F., et al. Effects of casein haplotypes on milk production traits in Italian Holstein and Brown Swiss cattle. Journal of Dairy Science 87 (2004) 4311-4317
2. Boutinaud M., Rulquin H., Keisler D.H., Djiane J., and Jammes H. Use of somatic cells from goat milk for dynamic studies of gene expression in the mammary gland. Journal of Animal Science 80 (2002) 1258-1269
3. Caroli A., Chiatti F., Chessa S., Rignanese D., Bolla P., and Pagnacco G. Focusing on the goat casein complex. Journal of Dairy Science 89 (2006) 3178-3187
4. Ceriotti G., Chessa S., Bolla P., Budelli E., Bianchi L., Duranti E., et al. Single nucleotide polymorphisms in the ovine casein genes detected by polymerase chain reaction-single strand conformation polymorphism. Journal of Dairy Science 87 (2004) 2606-2613
5. Ceriotti G., Chiatti F., Bolla R., Martini M., and Caroli A. Genetic variability of the ovine alpha(s1)-casein. Italian Journal of Animal Science 4 (2005) 64-66
6. Chen S.Y., Costa V., Azevedo M., Baig M., Malmakov N., Luikart G., et al. Short communication: new alleles of the bovine kappa-casein gene revealed by resequencing and haplotype inference analysis. Journal of Dairy Science 91 (2008) 3682-3686
7. Chessa S., Chiatti F., Ceriotti G., Caroli A., Consolandi C., Pagnacco G., et al. Development of a single nucleotide polymorphism genotyping microarray platform for the identification of bovine milk protein genetic polymorphisms. Journal of Dairy Science 90 (2007) 451-464
8. Chianese, L., Caira, S., Garro, G., & Addeo, F. (2007). Primary structure of ovine deleted variant as1-CN E. In: Proceedings of the 5th international symposium on the challenge to sheep and goats milk sectors (p. 70). Alghero/Sardinia. Italy.
9. Chianese L., Garro G., Mauriello R., Laezza P., Ferranti P., and Addeo F. Occurrence of five alpha s1-casein variants in ovine milk. Journal of Dairy Research 63 (1996) 49-59
10. Chianese L., Quarto M., Pizzolongo F., Calabrese M.G., Caira S., Mauriello R., et al. Occurrence of genetic polymorphism at the alpha(s1)-casein locus in Mediterranean water buffalo milk. International Dairy Journal 19 (2009) 181-189
11. Cocco R.R., Jarvinen K.M., Sampson H.A., and Beyer K. Mutational analysis of major, sequential IgE-binding epitopes in alpha s1-casein, a major cow's milk allergen. Journal of Allergy and Clinical Immunology 112 (2003) 433-437
12. Erhardt G. Allele frequencies of milk proteins in German cattle breeds and demonstration of αs2-casein variants by isoelectric focusing. Archiv für Tierzucht (Archives of Animal Breeding) 36 (1993) 145-152
13. Farrell Jr. H.M., Jimenez-Flores R., Bleck G.T., Brown E.M., Butler J.E., Creamer L.K., et al. Nomenclature of the proteins of cows' milk-sixth revision. Journal of Dairy Science 87 (2004) 1641-1674
14. Ferranti P., Malorni A., Nitti G., Laezza P., Pizzano R., Chianese L., et al. Primary structure of ovine alpha s1-caseins: localization of phosphorylation sites and characterization of genetic variants A, C and D. Journal of Dairy Research 62 (1995) 281-296
15. Groenen M.A., Dijkhof R.J., Verstege A.J., and Van Der Poel J.J. The complete sequence of the gene encoding bovine alpha s2-casein. Gene 123 (1993) 187-193
16. Grosclaude F., and Martin P. Casein polymorphisms in the goat. Proceedings of the 2nd IDF seminar "Milk protein polymorphism" (1997), International Dairy Federation, Palmerston North, New Zealand 241-253
17. Haliassos A., Chomel J.C., Grandjouan S., Kruh J., Kaplan J.C., and Kitzis A. Detection of minority point mutations by modified PCR technique: a new approach for a sensitive diagnosis of tumor-progression markers. Nucleic Acids Research 17 (1989) 8093-8099
18. Hallén E., Allmere T., Naslund J., Andren A., and Lunden A. Effect of genetic polymorphism of milk proteins on rheology of chymosin-induced milk gels. International Dairy Journal 17 (2007) 791-799
19. Heck J.M., Schennink A., Van Valenberg H.J., Bovenhuis H., Visker M.H., Van Arendonk J.A., et al. Effects of milk protein variants on the protein composition of bovine milk. Journal of Dairy Science 92 (2009) 1192-1202
20. *B and extensive distribution of zebu-specific milk protein alleles in European cattle. Journal of Dairy Science 90 (2007) 3522-3529
21. Ikonen T., Ahlfors K., Kempe R., Ojala M., and Ruottinen O. Genetic parameters for the milk coagulation properties and prevalence of noncoagulating milk in Finnish dairy cows. Journal of Dairy Science 82 (1999) 205-214
22. Jann O.C., Ibeagha-Awemu E.M., Ozbeyaz C., Zaragoza P., Williams J.L., Ajmone-Marsan P., et al. Geographic distribution of haplotype diversity at the bovine casein locus. Genetics, Selection, Evolution 36 (2004) 243-257
23. Leroux C., Mazure N., and Martin P. Mutations away from splice site recognition sequences might cis-modulate alternative splicing of goat alpha s1-casein transcripts. Structural organization of the relevant gene. Journal of Biological Chemistry 267 (1992) 6147-6157
24. Lien S., Alestrom P., Klungland H., and Rogne S. Detection of multiple beta-casein (CASB) alleles by amplification created restriction sites (ACRS). Animal Genetics 23 (1992) 333-338
25. s1-casein I variant. Animal Genetics 40 (2009) 479-485
26. Mahé M.F., Miranda G., Queval R., Bado A., Zafindrajaona P.S., and Grosclaude F. Genetic polymorphism of milk proteins in African Bos taurus and Bos indicus populations. Characterization of variants alpha(s1)-Cn H and kappa-Cn J. Genetics, Selection, Evolution 31 (1999) 239-253
27. Martin, P., & Leroux, C. (1994). Characterization of a further αs1-casein variant generated by exon skipping. In: Proceedings of the 24th international society of animal genetics conference (p. 86). Prague.
28. Martin P., Szymanowska M., Zwierzchowski L., and Leroux C. The impact of genetic polymorphisms on the protein composition of ruminant milks. Reproduction Nutrition Development 42 (2002) 433-459
29. Meisel H. Overview on milk protein-derived peptides. International Dairy Journal 8 (1998) 363-373
30. Mohr U., Koczan D., Linder D., Hobom G., and Erhardt G. A single point mutation results in A allele-specific exon skipping in the bovine alpha s1-casein mRNA. Gene 143 (1994) 187-192
31. Montgomery G.W., and Sise J.A. Extraction of DNA from sheep white blood cells. New Zealand Journal of Agricultural Research 33 (1990) 437-441
32. Moroni P., Pisoni G., Varisco G., and Boettcher P. Effect of intramammary infection in Bergamasca meat sheep on milk parameters and lamb growth. Journal of Dairy Research 74 (2007) 340-344
33. Ng-Kwai-Hang K.F. Genetic variants of milk proteins and their effects on the yield and quality of cheese. CAB Reviews: Perspectives in Agriculture, Veterinary Science, Nutrition and Natural Resources 56 (2006) 1-11
34. Nilsen H., Olsen H.-G., Hayes B., Sehested E., Svendsen M., Nome T., et al. Casein haplotypes and their association with milk production traits in Norwegian Red cattle. Genetics, Selection, Evolution 41 (2009) 24
35. Park Y.W., Juarez M., Ramos M., and Haenlein G.F.W. Physico-chemical characteristics of goat and sheep milk. Small Ruminant Research 68 (2007) 88-113
36. Pilla F., Bevilacqua C., Leroux C., Fraghi A., and Martin P. Genotyping of alpha-s1 casein in sheep. Animal Genetics 29 (1998) 472-473
37. Pirisi A., Piredda G., Papoff C.M., Di Salvo R., Pintus S., Garro G., et al. Effects of sheep alpha s1-casein CC, CD and DD genotypes on milk composition and cheesemaking properties. Journal of Dairy Science 66 (1999) 409-419
38. Ramunno L., Cosenza G., Rando A., Macciotta N.P.P., Pappalardo M., and Masina P. Identification of carriers of the Welsh CASA1 variant using an allele-specific PCR method. Animal Genetics 28 (1997) 154-155
39. Reese M.G., Eeckman F.H., Kulp D., and Haussler D. Improved splice site detection in Genie. Journal of Computational Biology 4 (1997) 311-323
40. Rijnkels M. Multispecies comparison of the casein gene loci and evolution of casein gene family. Journal of Mammary Gland Biology and Neoplasia 7 (2002) 327-345
41. Sacchi P., Chessa S., Budelli E., Bolla P., Ceriotti G., Soglia D., et al. Casein haplotype structure in five Italian goat breeds. Journal of Dairy Science 88 (2005) 1561-1568
42. Seibert B., Erhardt G., and Senft B. Procedure for simultaneous phenotyping of genetic variants in cow's milk by isoelectric focusing. Animal Blood Groups and Biochemical Genetics 16 (1985) 183-191
43. Shin H.J., Park H.Y., Jeong S.J., Park H.W., Kim Y.K., Cho S.H., et al. STAT4 expression in human T cells is regulated by DNA methylation but not by promoter polymorphism. Journal of Immunology 175 (2005) 7143-7150
44. Snowder G.D., and Glimp H.A. Influence of breed, number of suckling lambs, and stage of lactation on ewe milk-production and lamb growth under range conditions. Journal of Animal Science 69 (1991) 923-930
45. Spuergin P., Mueller H., Walter M., Schiltz E., and Forster J. Allergenic epitopes of bovine alpha S1-casein recognized by human IgE and IgG. Allergy 51 (1996) 306-312
46. Tziboula A., and Horne D.S. The role of alpha(s1)-casein in the structure of caprine casein micelles. International Dairy Journal 9 (1999) 173-178
47. Weimann C., Meisel H., and Erhardt G. Bovine κ-casein variants result in different angiotensin I converting enzyme (ACE) inhibitory peptides. Journal of Dairy Science 92 (2009) 1885-1888