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Volumn 4, Issue 11, 2009, Pages 958-968

Structure-activity analysis of semisynthetic nucleosomes: Mechanistic insights into the stimulation of Dot1L by ubiquitylated histone H2B

Author keywords

[No Author keywords available]

Indexed keywords

HISTONE H2B; HISTONE H3; HISTONE LYSINE METHYLTRANSFERASE; HISTONE METHYLTRANSFERASE; MUTANT PROTEIN; PROTEIN U(G76A)H2B; UBIQUITIN; UNCLASSIFIED DRUG;

EID: 73449105394     PISSN: 15548929     EISSN: None     Source Type: Journal    
DOI: 10.1021/cb9002255     Document Type: Article
Times cited : (108)

References (49)
  • 1
    • 33847076849 scopus 로고    scopus 로고
    • Chromatin modifications and their function
    • Kouzarides, T. (2007) Chromatin modifications and their function, Cell 128, 693-705.
    • (2007) Cell , vol.128 , pp. 693-705
    • Kouzarides, T.1
  • 3
    • 32444434989 scopus 로고    scopus 로고
    • Histone H4-K16 acetylation controls chromatin structure and protein interactions
    • Shogren-Knaak, M., Ishii, H., Sun, J. M., Pazin, M. J., Davie, J. R., and Peterson, C. L. (2006) Histone H4-K16 acetylation controls chromatin structure and protein interactions, Science 311, 844-847.
    • (2006) Science , vol.311 , pp. 844-847
    • Shogren-Knaak, M.1    Ishii, H.2    Sun, J.M.3    Pazin, M.J.4    Davie, J.R.5    Peterson, C.L.6
  • 4
    • 35848961668 scopus 로고    scopus 로고
    • How chromatin-binding modules interpret histone modifications: Lessons from professional pocket pickers
    • Taverna, S. D., Li, H., Ruthenburg, A. J., Allis, C. D., and Patel, D. J. (2007) How chromatin-binding modules interpret histone modifications: lessons from professional pocket pickers, Nat. Struct. Mol. Biol. 14, 1025-1040.
    • (2007) Nat. Struct. Mol. Biol , vol.14 , pp. 1025-1040
    • Taverna, S.D.1    Li, H.2    Ruthenburg, A.J.3    Allis, C.D.4    Patel, D.J.5
  • 5
    • 0019332014 scopus 로고
    • Histone 2B can be modified by the attachment of ubiquitin
    • West, M. H., and Bonner, W. M. (1980) Histone 2B can be modified by the attachment of ubiquitin, Nucleic Acids Res. 8, 4671-4680.
    • (1980) Nucleic Acids Res , vol.8 , pp. 4671-4680
    • West, M.H.1    Bonner, W.M.2
  • 6
    • 63049135667 scopus 로고    scopus 로고
    • The role of RAD6 in recombinational repair, checkpoints and meiosis via histone modification
    • Game, J. C., and Chernikova, S. B. (2009) The role of RAD6 in recombinational repair, checkpoints and meiosis via histone modification, DNA Repair 8, 470-482.
    • (2009) DNA Repair , vol.8 , pp. 470-482
    • Game, J.C.1    Chernikova, S.B.2
  • 7
    • 40849106789 scopus 로고    scopus 로고
    • Histone ubiquitination: Triggering gene activity
    • Weake, V. M., and Workman, J. L. (2008) Histone ubiquitination: triggering gene activity, Mol. Cell 29, 653-663.
    • (2008) Mol. Cell , vol.29 , pp. 653-663
    • Weake, V.M.1    Workman, J.L.2
  • 8
    • 15444373985 scopus 로고    scopus 로고
    • The DNA damage checkpoint response requires histone H2B ubiquitination by Rad6-Bre1 and H3 methylation by Dot1
    • Giannattasio, M., Lazzaro, F., Plevani, P., and Muzi-Falconi, M. (2005) The DNA damage checkpoint response requires histone H2B ubiquitination by Rad6-Bre1 and H3 methylation by Dot1, J. Biol. Chem. 280, 9879-9886.
    • (2005) J. Biol. Chem , vol.280 , pp. 9879-9886
    • Giannattasio, M.1    Lazzaro, F.2    Plevani, P.3    Muzi-Falconi, M.4
  • 9
    • 27944454433 scopus 로고    scopus 로고
    • Monoubiquitination of human histone H2B: The factors involved and their roles in HOX gene regulation
    • Zhu, B., Zheng, Y., Pham, A. D., Mandal, S. S., Erdjument-Bromage, H., Tempst, P., and Reinberg, D. (2005) Monoubiquitination of human histone H2B: the factors involved and their roles in HOX gene regulation, Mol. Cell 20, 601-611.
    • (2005) Mol. Cell , vol.20 , pp. 601-611
    • Zhu, B.1    Zheng, Y.2    Pham, A.D.3    Mandal, S.S.4    Erdjument-Bromage, H.5    Tempst, P.6    Reinberg, D.7
  • 10
    • 28444463638 scopus 로고    scopus 로고
    • The human homolog of yeast BRE1 functions as a transcriptional coactivator through direct activator interactions
    • Kim, J., Hake, S. B., and Roeder, R. G. (2005) The human homolog of yeast BRE1 functions as a transcriptional coactivator through direct activator interactions, Mol. Cell 20, 759-770.
    • (2005) Mol. Cell , vol.20 , pp. 759-770
    • Kim, J.1    Hake, S.B.2    Roeder, R.G.3
  • 11
    • 0037144393 scopus 로고    scopus 로고
    • Ng, H. H., Xu, R. M., Zhang, Y., and Struhl, K. (2002) Ubiquitination of histone H2B by Rad6 is required for efficient Dot1-mediated methylation of histone H3 lysine 79, J. Biol. Chem. 277, 34655-34657.
    • Ng, H. H., Xu, R. M., Zhang, Y., and Struhl, K. (2002) Ubiquitination of histone H2B by Rad6 is required for efficient Dot1-mediated methylation of histone H3 lysine 79, J. Biol. Chem. 277, 34655-34657.
  • 14
    • 33847318869 scopus 로고    scopus 로고
    • Methylation of histone H3 lysine-79 by Dot1p plays multiple roles in the response to UV damage in Saccharomyces cerevisiae
    • Bostelman, L. J., Keller, A. M., Albrecht, A. M., Arat, A., and Thompson, J. S. (2007) Methylation of histone H3 lysine-79 by Dot1p plays multiple roles in the response to UV damage in Saccharomyces cerevisiae, DNA Repair 6, 383-395.
    • (2007) DNA Repair , vol.6 , pp. 383-395
    • Bostelman, L.J.1    Keller, A.M.2    Albrecht, A.M.3    Arat, A.4    Thompson, J.S.5
  • 16
    • 65249105512 scopus 로고    scopus 로고
    • RAD6-Mediated transcription-coupled H2B ubiquitylation directly stimulates H3K4 methylation in human cells
    • Kim, J., Guermah, M., McGinty, R. K., Lee, J. S., Tang, Z., Milne, T. A., Shilatifard, A., Muir, T. W., and Roeder, R. G. (2009) RAD6-Mediated transcription-coupled H2B ubiquitylation directly stimulates H3K4 methylation in human cells, Cell 137, 459-471.
    • (2009) Cell , vol.137 , pp. 459-471
    • Kim, J.1    Guermah, M.2    McGinty, R.K.3    Lee, J.S.4    Tang, Z.5    Milne, T.A.6    Shilatifard, A.7    Muir, T.W.8    Roeder, R.G.9
  • 17
    • 44849100496 scopus 로고    scopus 로고
    • Chemically ubiquitylated histone H2B stimulates hDot1L-mediated intranucleosomal methylation
    • McGinty, R. K., Kim, J., Chatterjee, C., Roeder, R. G., and Muir, T. W. (2008) Chemically ubiquitylated histone H2B stimulates hDot1L-mediated intranucleosomal methylation, Nature 453, 812-816.
    • (2008) Nature , vol.453 , pp. 812-816
    • McGinty, R.K.1    Kim, J.2    Chatterjee, C.3    Roeder, R.G.4    Muir, T.W.5
  • 18
    • 61849177109 scopus 로고    scopus 로고
    • Expressed protein ligation (EPL) in the study of signal transduction, ion conduction, and chromatin biology
    • Flavell, R. R., and Muir, T. W. (2009) Expressed protein ligation (EPL) in the study of signal transduction, ion conduction, and chromatin biology, Acc. Chem. Res. 42, 107-116.
    • (2009) Acc. Chem. Res , vol.42 , pp. 107-116
    • Flavell, R.R.1    Muir, T.W.2
  • 19
    • 24944434055 scopus 로고    scopus 로고
    • A ligation and photorelease strategy for the temporal and spatial control of protein function in living cells
    • Pellois, J. P., and Muir, T. W. (2005) A ligation and photorelease strategy for the temporal and spatial control of protein function in living cells, Angew. Chem., Int. Ed. 44, 5713-5717.
    • (2005) Angew. Chem., Int. Ed , vol.44 , pp. 5713-5717
    • Pellois, J.P.1    Muir, T.W.2
  • 21
    • 2142750128 scopus 로고    scopus 로고
    • An o-nitrobenzyl scaffold for peptide ligation: Synthesis and applications
    • Marinzi, C., Offer, J., Longhi, R., and Dawson, P. E. (2004) An o-nitrobenzyl scaffold for peptide ligation: synthesis and applications, Bioorg. Med. Chem. 12, 2749-2757.
    • (2004) Bioorg. Med. Chem , vol.12 , pp. 2749-2757
    • Marinzi, C.1    Offer, J.2    Longhi, R.3    Dawson, P.E.4
  • 22
    • 0035977638 scopus 로고    scopus 로고
    • Synthesis of peptides and proteins without cysteine residues by native chemical ligation combined with desulfurization
    • Yan, L. Z., and Dawson, P. E. (2001) Synthesis of peptides and proteins without cysteine residues by native chemical ligation combined with desulfurization, J. Am. Chem. Soc. 123, 526-533.
    • (2001) J. Am. Chem. Soc , vol.123 , pp. 526-533
    • Yan, L.Z.1    Dawson, P.E.2
  • 23
    • 37349094422 scopus 로고    scopus 로고
    • Free-radical-based, specific desulfurization of cysteine: A powerful advance in the synthesis of polypeptides and glycopolypeptides
    • Wan, Q., and Danishefsky, S. J. (2007) Free-radical-based, specific desulfurization of cysteine: a powerful advance in the synthesis of polypeptides and glycopolypeptides, Angew. Chem., Int. Ed. 46, 9248-9252.
    • (2007) Angew. Chem., Int. Ed , vol.46 , pp. 9248-9252
    • Wan, Q.1    Danishefsky, S.J.2
  • 24
    • 33750555919 scopus 로고    scopus 로고
    • Ubiquitin-binding domains
    • Hurley, J. H., Lee, S., and Prag, G. (2006) Ubiquitin-binding domains, Biochem. J. 399, 361-372.
    • (2006) Biochem. J , vol.399 , pp. 361-372
    • Hurley, J.H.1    Lee, S.2    Prag, G.3
  • 25
    • 0028235968 scopus 로고
    • Substrate properties of site-specific mutant ubiquitin protein (G76A) reveal unexpected mechanistic features of ubiquitin-activating enzyme (E1)
    • Pickart, C. M., Kasperek, E. M., Beal, R., and Kim, A. (1994) Substrate properties of site-specific mutant ubiquitin protein (G76A) reveal unexpected mechanistic features of ubiquitin-activating enzyme (E1), J. Biol. Chem. 269, 7115-7123.
    • (1994) J. Biol. Chem , vol.269 , pp. 7115-7123
    • Pickart, C.M.1    Kasperek, E.M.2    Beal, R.3    Kim, A.4
  • 26
    • 0026803107 scopus 로고
    • Expression of a ubiquitin derivative that conjugates to protein irreversibly produces phenotypes consistent with a ubiquitin deficiency
    • Hodgins, R. R., Ellison, K. S., and Ellison, M. J. (1992) Expression of a ubiquitin derivative that conjugates to protein irreversibly produces phenotypes consistent with a ubiquitin deficiency, J. Biol. Chem. 267, 8807-8812.
    • (1992) J. Biol. Chem , vol.267 , pp. 8807-8812
    • Hodgins, R.R.1    Ellison, K.S.2    Ellison, M.J.3
  • 27
    • 0032512794 scopus 로고    scopus 로고
    • New DNA sequence rules for high affinity binding to histone octamer and sequence-directed nucleosome positioning
    • Lowary, P. T., and Widom, J. (1998) New DNA sequence rules for high affinity binding to histone octamer and sequence-directed nucleosome positioning, J. Mol. Biol. 276, 19-42.
    • (1998) J. Mol. Biol , vol.276 , pp. 19-42
    • Lowary, P.T.1    Widom, J.2
  • 28
    • 22544461653 scopus 로고    scopus 로고
    • Histone H2B ubiquitylation controls processive methylation but not monomethylation by Dot1 and Set1
    • Shahbazian, M. D., Zhang, K., and Grunstein, M. (2005) Histone H2B ubiquitylation controls processive methylation but not monomethylation by Dot1 and Set1, Mol. Cell 19, 271-277.
    • (2005) Mol. Cell , vol.19 , pp. 271-277
    • Shahbazian, M.D.1    Zhang, K.2    Grunstein, M.3
  • 29
    • 1842411320 scopus 로고    scopus 로고
    • Crystal structure of the nucleosome core particle at 2.8 Å resolution
    • Luger, K., Mader, A. W., Richmond, R. K., Sargent, D. F., and Richmond, T. J. (1997) Crystal structure of the nucleosome core particle at 2.8 Å resolution, Nature 389, 251-260.
    • (1997) Nature , vol.389 , pp. 251-260
    • Luger, K.1    Mader, A.W.2    Richmond, R.K.3    Sargent, D.F.4    Richmond, T.J.5
  • 30
    • 20444414511 scopus 로고    scopus 로고
    • A coupled fluorescent assay for histone methyltransferases
    • Collazo, E., Couture, J. F., Bulfer, S., and Trievel, R. C. (2005) A coupled fluorescent assay for histone methyltransferases, Anal. Biochem. 342, 86-92.
    • (2005) Anal. Biochem , vol.342 , pp. 86-92
    • Collazo, E.1    Couture, J.F.2    Bulfer, S.3    Trievel, R.C.4
  • 31
    • 33947615716 scopus 로고    scopus 로고
    • Kinetic manifestation of processivity during multiple methylations catalyzed by SET domain protein methyltransferases
    • Dirk, L. M., Flynn, E. M., Dietzel, K., Couture, J. F., Trievel, R. C., and Houtz, R. L. (2007) Kinetic manifestation of processivity during multiple methylations catalyzed by SET domain protein methyltransferases, Biochemistry 46, 3905-3915.
    • (2007) Biochemistry , vol.46 , pp. 3905-3915
    • Dirk, L.M.1    Flynn, E.M.2    Dietzel, K.3    Couture, J.F.4    Trievel, R.C.5    Houtz, R.L.6
  • 32
    • 0037020199 scopus 로고    scopus 로고
    • Structure and catalytic mechanism of a SET domain protein methyltransferase
    • Trievel, R. C., Beach, B. M., Dirk, L. M., Houtz, R. L., and Hurley, J. H. (2002) Structure and catalytic mechanism of a SET domain protein methyltransferase, Cell 111, 91-103.
    • (2002) Cell , vol.111 , pp. 91-103
    • Trievel, R.C.1    Beach, B.M.2    Dirk, L.M.3    Houtz, R.L.4    Hurley, J.H.5
  • 33
    • 11144241618 scopus 로고    scopus 로고
    • Substrate specificity and kinetic mechanism of mammalian G9a histone H3 methyltransferase
    • Patnaik, D., Chin, H. G., Esteve, P. O., Benner, J., Jacobsen, S. E., and Pradhan, S. (2004) Substrate specificity and kinetic mechanism of mammalian G9a histone H3 methyltransferase, J. Biol. Chem. 279, 53248-53258.
    • (2004) J. Biol. Chem , vol.279 , pp. 53248-53258
    • Patnaik, D.1    Chin, H.G.2    Esteve, P.O.3    Benner, J.4    Jacobsen, S.E.5    Pradhan, S.6
  • 34
    • 33644853638 scopus 로고    scopus 로고
    • Catalytic properties and kinetic mechanism of human recombinant Lys-9 histone H3 methyltransferase SUV39H1: Participation of the chromodomain in enzymatic catalysis
    • Chin, H. G., Patnaik, D., Esteve, P. O., Jacobsen, S. E., and Pradhan, S. (2006) Catalytic properties and kinetic mechanism of human recombinant Lys-9 histone H3 methyltransferase SUV39H1: participation of the chromodomain in enzymatic catalysis, Biochemistry 45, 3272-3284.
    • (2006) Biochemistry , vol.45 , pp. 3272-3284
    • Chin, H.G.1    Patnaik, D.2    Esteve, P.O.3    Jacobsen, S.E.4    Pradhan, S.5
  • 35
    • 1642369447 scopus 로고    scopus 로고
    • The N-terminus of Drosophila SU(VAR)3-9 mediates dimerization and regulates its methyltransferase activity
    • Eskeland, R., Czermin, B., Boeke, J., Bonaldi, T., Regula, J. T., and Imhof, A. (2004) The N-terminus of Drosophila SU(VAR)3-9 mediates dimerization and regulates its methyltransferase activity, Biochemistry 43, 3740-3749.
    • (2004) Biochemistry , vol.43 , pp. 3740-3749
    • Eskeland, R.1    Czermin, B.2    Boeke, J.3    Bonaldi, T.4    Regula, J.T.5    Imhof, A.6
  • 37
    • 0033638223 scopus 로고    scopus 로고
    • Ulp1-SUMO crystal structure and genetic analysis reveal conserved interactions and a regulatory element essential for cell growth in yeast
    • Mossessova, E., and Lima, C. D. (2000) Ulp1-SUMO crystal structure and genetic analysis reveal conserved interactions and a regulatory element essential for cell growth in yeast, Mol. Cell 5, 865-876.
    • (2000) Mol. Cell , vol.5 , pp. 865-876
    • Mossessova, E.1    Lima, C.D.2
  • 38
    • 0030052841 scopus 로고    scopus 로고
    • Surface hydrophobic residues of multiubiquitin chains essential for proteolytic targeting
    • Beal, R., Deveraux, Q., Xia, G., Rechsteiner, M., and Pickart, C. (1996) Surface hydrophobic residues of multiubiquitin chains essential for proteolytic targeting, Proc. Natl. Acad. Sci. U.S.A. 93, 861-866.
    • (1996) Proc. Natl. Acad. Sci. U.S.A , vol.93 , pp. 861-866
    • Beal, R.1    Deveraux, Q.2    Xia, G.3    Rechsteiner, M.4    Pickart, C.5
  • 39
    • 0038820381 scopus 로고    scopus 로고
    • Solution structure of a CUE-ubiquitin complex reveals a conserved mode of ubiquitin binding
    • Kang, R. S., Daniels, C. M., Francis, S. A., Shih, S. C., Salerno, W. J., Hicke, L., and Radhakrishnan, I. (2003) Solution structure of a CUE-ubiquitin complex reveals a conserved mode of ubiquitin binding, Cell 113, 621-630.
    • (2003) Cell , vol.113 , pp. 621-630
    • Kang, R.S.1    Daniels, C.M.2    Francis, S.A.3    Shih, S.C.4    Salerno, W.J.5    Hicke, L.6    Radhakrishnan, I.7
  • 40
    • 0036094688 scopus 로고    scopus 로고
    • Epsins and Vps27p/Hrs contain ubiquitin-binding domains that function in receptor endocytosis
    • Shih, S. C., Katzmann, D. J., Schnell, J. D., Sutanto, M., Emr, S. D., and Hicke, L. (2002) Epsins and Vps27p/Hrs contain ubiquitin-binding domains that function in receptor endocytosis, Nat. Cell Biol. 4, 389-393.
    • (2002) Nat. Cell Biol , vol.4 , pp. 389-393
    • Shih, S.C.1    Katzmann, D.J.2    Schnell, J.D.3    Sutanto, M.4    Emr, S.D.5    Hicke, L.6
  • 42
    • 37349107849 scopus 로고    scopus 로고
    • Interplay of chromatin modifiers on a short basic patch of histone H4 tail defines the boundary of telomeric heterochromatin
    • Altaf, M., Utley, R. T., Lacoste, N., Tan, S., Briggs, S. D., and Cote, J. (2007) Interplay of chromatin modifiers on a short basic patch of histone H4 tail defines the boundary of telomeric heterochromatin, Mol. Cell 28, 1002-1014.
    • (2007) Mol. Cell , vol.28 , pp. 1002-1014
    • Altaf, M.1    Utley, R.T.2    Lacoste, N.3    Tan, S.4    Briggs, S.D.5    Cote, J.6
  • 43
    • 34547949573 scopus 로고    scopus 로고
    • A charge-based interaction between histone H4 and Dot1 is required for H3K79 methylation and telomere silencing: Identification of a new transhistone pathway
    • Fingerman, I. M., Li, H. C., and Briggs, S. D. (2007) A charge-based interaction between histone H4 and Dot1 is required for H3K79 methylation and telomere silencing: identification of a new transhistone pathway, Genes Dev. 21, 2018-2029.
    • (2007) Genes Dev , vol.21 , pp. 2018-2029
    • Fingerman, I.M.1    Li, H.C.2    Briggs, S.D.3
  • 44
    • 27744592390 scopus 로고    scopus 로고
    • Cross-talking histones: Implications for the regulation of gene expression and DNA repair
    • Wood, A., Schneider, J., and Shilatifard, A. (2005) Cross-talking histones: implications for the regulation of gene expression and DNA repair, Biochem. Cell Biol. 83, 460-467.
    • (2005) Biochem. Cell Biol , vol.83 , pp. 460-467
    • Wood, A.1    Schneider, J.2    Shilatifard, A.3
  • 45
    • 33847791752 scopus 로고    scopus 로고
    • Selective desulfurization of cysteine in the presence of Cys(Acm) in polypeptides obtained by native chemical ligation
    • Pentelute, B. L., and Kent, S. B. (2007) Selective desulfurization of cysteine in the presence of Cys(Acm) in polypeptides obtained by native chemical ligation, Org. Lett. 9, 687-690.
    • (2007) Org. Lett , vol.9 , pp. 687-690
    • Pentelute, B.L.1    Kent, S.B.2
  • 46
    • 70349390704 scopus 로고    scopus 로고
    • A semisynthetic strategy to generate phosphorylated and acetylated histone H2B
    • Chiang, K. P., Jensen, M. S., McGinty, R. K., and Muir, T. W. (2009) A semisynthetic strategy to generate phosphorylated and acetylated histone H2B, ChemBioChem 10, 2182-2187.
    • (2009) ChemBioChem , vol.10 , pp. 2182-2187
    • Chiang, K.P.1    Jensen, M.S.2    McGinty, R.K.3    Muir, T.W.4
  • 48
    • 0023644679 scopus 로고
    • Structure of ubiquitin refined at 1.8 Å resolution
    • Vijay-Kumar, S., Bugg, C. E., and Cook, W. J. (1987) Structure of ubiquitin refined at 1.8 Å resolution, J. Mol. Biol. 194, 531-544.
    • (1987) J. Mol. Biol , vol.194 , pp. 531-544
    • Vijay-Kumar, S.1    Bugg, C.E.2    Cook, W.J.3
  • 49
    • 0036307707 scopus 로고    scopus 로고
    • Solvent mediated interactions in the structure of the nucleosome core particle at 1.9 Å resolution
    • Davey, C. A., Sargent, D. F., Luger, K., Maeder, A. W., and Richmond, T. J. (2002) Solvent mediated interactions in the structure of the nucleosome core particle at 1.9 Å resolution, J. Mol. Biol. 319, 1097-1113.
    • (2002) J. Mol. Biol , vol.319 , pp. 1097-1113
    • Davey, C.A.1    Sargent, D.F.2    Luger, K.3    Maeder, A.W.4    Richmond, T.J.5


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