A comparative study of ryanodine receptor (RyR) gene expression levels in a basal ray-finned fish, bichir (Polypterus ornatipinnis) and the derived euteleost zebrafish (Danio rerio)

Comparative Biochemistry and Physiology - B Biochemistry and Molecular Biology

Volumn 154, Issue 4, 2009, Pages 443-448

  Darbandi, Siavash ^a   Franck, Jens P C ^a,b  

^a UNIVERSITY OF WINNIPEG   (Canada)

^b UNIVERSITY OF MANITOBA   (Canada)

Author keywords

Gene expression; Genome duplication; Molecular evolution; qRT PCR; Ryanodine receptor

Indexed keywords

RYANODINE RECEPTOR; RYANODINE RECEPTOR 1A; RYANODINE RECEPTOR 1B; RYANODINE RECEPTOR 2; RYANODINE RECEPTOR 3; UNCLASSIFIED DRUG;

ANIMAL EXPERIMENT; ANIMAL TISSUE; ARTICLE; CONTROLLED STUDY; FISH; GENE CLUSTER; GENE EXPRESSION REGULATION; GENOME ANALYSIS; NONHUMAN; NUCLEOTIDE SEQUENCE; ORTHOLOGY; PHYLOGENY; PRIORITY JOURNAL; RECEPTOR DOWN REGULATION; VERTEBRATE; ZEBRA FISH;

ACTINOPTERYGII; DANIO RERIO; MAMMALIA; POLYPTERUS ORNATIPINNIS; TELEOSTEI; VERTEBRATA;

EID: 72649101344     PISSN: 10964959     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.cbpb.2009.09.003     Document Type: Article

References (29)

1. Altschul S.F., Gish W., Miller W., Myers E.W., and Lipman D.J. Basic local alignment search tool. J. Mol. Biol. 215 (1990) 403-410
2. Chiu C.-h., Dewar K., Wagner G.P., Takahashi K., Ruddle F., Ledje C., Bartsch P., Scemama J.-L., Stellwag E., Fried C., Prohaska S.J., Stadler P.F., and Amemiya C.T. Bichir HoxA cluster sequence reveals surprising trends in ray-finned fish genomic evolution. Genome Res. 14 (2004) 11-17
3. Dayhoff M.O., Eck R.V., and CM P. A model of evolutionary change in proteins (1972), National Biomedical Research Foundation, Washington, D.C
4. Di Biase V., and Franzini-Armstrong C. Evolution of skeletal type e-c coupling: a novel means of controlling calcium delivery. J. Cell Biol. 171 (2005) 695-704
5. Felsenstein J. PHYLIP (Phylogeny Inference Package) (1993)
6. Fill M., and Copello J.A. Ryanodine receptor calcium release channels. Physiol. Rev. 82 (2002) 893-922
7. Force A., Lynch M., Pickett F.B., Amores A., Yan Y.-l., and Postlethwait J. Preservation of duplicate genes by complementary, degenerative mutations. Genetics 151 (1999) 1531-1545
8. Franck J.P.C., Morrissette J., Keen J.E., Londraville R.L., Beamsley M., and Block B.A. Cloning and characterization of fiber type-specific ryanodine receptor isoforms in skeletal muscles of fish. Am. J. Physiol. 275 (1998) C401-C415
9. Franck, J.P.C., Reimer, K.R., Hill, K., in preparation. Molecular evolution of the RyR gene family: A phylogenetic and comparative genomic analysis.
10. Giannini G., Conti A., Mammarella S., Scrobogna M., and Sorrentino V. The ryanodine receptor/calcium channel genes are widely and differentially expressed in murine brain and peripheral tissues. J. Cell Biol. 128 (1995) 893-904
11. Hirata H., Watanabe T., Hatakeyama J., Sprague S.M., Saint-Amant L., Nagashima A., Cui W.W., Zhou W., and Kuwada J.Y. Zebrafish relatively relaxed mutants have a ryanodine receptor defect, show slow swimming and provide a model of multi-minicore disease. Development 134 (2007) 2771-2781
12. Holland P.W.H. Gene duplication: past, present and future. Semin. Cell Dev. Biol. 10 (1999) 541-547
13. Inoue I., Tsutsui I., and Bone Q. Excitation-contraction coupling in skeletal and caudal heart muscle of the hagfish Eptatretus burgeri Girard. J. Exp. Biol. 205 (2002) 3535-3541
14. Meyer A., and Schartl M. Gene and genome duplications in vertebrates: the one-to-four (-to-eight in fish) rule and the evolution of novel gene functions. Curr. Opin. Cell Biol. 11 (1999) 699-704
15. Meyer A., and Van de Peer Y. From 2R to 3R Evidence for fish-specific genome duplication (FSGD). Bioessays 27 (2005) 937-945
16. Morrissette J., Xu L., Nelson A., Meissner G., and Block B.A. Characterization of RyR1-slow, a ryanodine receptor specific to slow-twitch skeletal muscle. Am. J. Physiol. 279 (2000) R1889-R1898
17. O'Brien J., Meissner G., and Block B.A. The fastest contracting muscles of nonmammalian vertebrates express only one isoform of the ryanodine receptor. Biophys. J. 65 (1993) 2418-2427
18. O'Brien J., Valdivia H.H., and Block B.A. Physiological differences between the α and β ryanodine receptors of fish skeletal muscle. Biophys. J. 68 (1995) 471-482
19. Oyamada H., Murayama T., Takagi T., Iino M., Iwabe N., Miyata T., Ogawa Y., and Endo M. Primary structure and distribution of ryanodine-binding protein isoforms of the bullfrog skeletal muscle. J. Biol. Chem. 269 (1994) 17206-17214
20. Page R.D.M. TREEVIEW: an application to display phylogenetic trees on personal computers. Comput. Appl. Biosci. 12 (1996) 357-358
21. Percival A.L., Williams A.J., Kenyon J.L., Grinsell M.M., Airey J.A., and Sutko J.L. Chicken skeletal muscle ryanodine receptor isoforms: ion channel properties. Biophys. J. 67 (1994) 1834-1850
22. Rose T.M., Schultz E.R., Henikoff J.G., Pietrokovski S., McCallum C.M., and Henikoff S. Consensus-degenerate hybrid oligonucleotide primers for amplification of distantly-related sequences. Nucleic Acids Res. 26 (1998) 1628-1635
23. Rossi D., and Sorrentino V. Molecular genetics of ryanodine receptors Ca2 + -release channels. Cell Calcium 32 (2002) 307-319
24. Rozen S., and Skaletsky H. Primer3 on the WWW for general users and for biologist programmers. In: Krawetz S., and Misener S. (Eds). Bioinformatics Methods and Protocols: Methods in Molecular Biology (2000), Humana Press, Totowa, NJ 365-386
25. Sutko J.L., and Airey J.A. Ryanodine receptor Ca2+ release channels: does diversity in form equal diversity in function?. Physiol. Rev. 76 (1996) 1027-1071
26. Thompson J.D., Gibson T.J., Plewniak F., Jeanmougin F., and Higgins D.G. The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25 (1997) 4876-4882
27. Westneat M.W., Hale M.E., McHenry M.J., and Long J.H. Mechanics of the fast-start: muscle function and the role of intramuscular pressure in the escape behavior of Amia calva and Polypterus palmas. J. Exp. Biol. 201 (1998) 3041-3055
28. Yin C.-C., D'Cruz L.G., and Lai F.A. Ryanodine receptor arrays: not just a pretty pattern?. Trends Cell Biol. 18 (2008) 149-156
29. Zaccone G., Mauceri A., Maisano M., Giannetto A., Parrino V., and Fasulo S. Distribution and neurotransmitter localization in the heart of the ray-finned fish, bichir (Polypterus bichir bichir Geoffroy St. Hilaire, 1802). Acta Histochem. 111 (2007) 93-103