Gene duplication: Past, present and future

Seminars in Cell and Developmental Biology

Volumn 10, Issue 5, 1999, Pages 541-547

  Holland, Peter W H ^a  

^a UNIVERSITY OF READING   (United Kingdom)

Author keywords

Complexity; Genome duplication; Homeotic genes

Indexed keywords

VERTEBRATA;

ANIMAL; BIOLOGICAL MODEL; DROSOPHILA; FISH; GENE DELETION; GENE DUPLICATION; GENETICS; GENOTYPE; HOMEOBOX; MOLECULAR EVOLUTION; MULTIGENE FAMILY; PHENOTYPE; PHYLOGENY; REVIEW;

ANIMALS; DROSOPHILA; EVOLUTION, MOLECULAR; FISHES; GENE DELETION; GENE DUPLICATION; GENES, HOMEOBOX; GENOTYPE; MODELS, GENETIC; MULTIGENE FAMILY; PHENOTYPE; PHYLOGENY;

EID: 0033208973     PISSN: 10849521     EISSN: None     Source Type: Journal    
DOI: 10.1006/scdb.1999.0335     Document Type: Article

References (45)

1. Sturtevant AH. The effects of unequal crossing over at the Bar locus in Drosophila. Genetics. 10:1925;117-147.
2. Bridges CB. The 'Bar' gene, a duplication. Science. 83:1936;210-211.
3. Lewis EB. A gene complex controlling segmentation in Drosophila. Nature. 276:1978;565-570.
4. Akam M, Dawson I, Tear G. Homeotic genes and the control of seg ment identity. Development. 104:1988;123-133.
5. Ohno S. Evolution by Gene Duplication. 1970;SpringerVerlag, Heidelberg.
6. McGinnis W, Levine MS, Hafen E, Kuroiwa A, Gehring WJ. A conserved DNA sequence in homeotic genes of Drosophila Antennapedia and Bithorax complexes. Nature. 308:1984;428-433.
7. Scott MP, Weiner A. Structural relationships among genes that control development: sequence homology between the Antennapedia, Ultrabithorax and fushi tarazu loci of Drosophila. Proc Natl Acad Sci USA. 81:1984;4115-4119.
8. Regulski M, Harding K, Kostriken R, Karch F, Levine M, McGinnis W. Homeo box genes of the Antennapedia and Bithorax complexes of Drosophila. Cell. 43:1985;71-80.
9. Averof M, Akam ME. HOM/Hox genes of Artemia: implications for the origin of insect and crustacean body plans. Curr Biol. 3:1993;73-78.
10. Finnerty JR, Martindale MQ. The evolution of the Hox cluster: insights from outgroups. Curr Opin Genet Dev. 8:1998;681-687.
11. deRosa R, Grenier JK, Andreeva T, Cook CE, Adoutte A, Akam M, Carroll SB, Balavoine G. Hox genes in brachiopods and priapulids and protostome evolution. Nature. 399:1999;772-776.
12. Atkin NB, Ohno S. DNA values of four primitive chordates. Chromosoma. 23:1967;10-13.
13. Schmidtke J, Weiler C, Kunz B, Engel W. Isozymes of a tunicate and a cephalochordate as a test of polyploidisation in chordate evolution. Nature. 266:1977;532-533.
14. Garcia-Fernàndez J, Holland PWH. Archetypal organization of the amphioxus Hox gene cluster. Nature. 370:1994;563-566.
15. Williams NA, Holland PWH. Gene and domain duplication in the chordate Otx gene family: insights from amphioxus Otx. Mol Biol Evol. 15:1998;600-607.
16. Sharman AC, Shimeld SM, Holland PWH. An amphioxus Msx gene expressed predominantly in the dorsal neural tube. Dev Genes Evol. 209:1999;260-263.
17. Brooke NM, Garcia-Fernàndez J, Holland PWH. The ParaHox gene cluster is an evolutionary sister of the Hox gene cluster. Nature. 392:1998;920-922.
18. Holland LZ, Kene M, Williams NA, Holland ND. Sequence and embryonic expression of the amphioxus engrailed gene (AmphiEn): the metameric pattern of transcription resembles that of its segment-polarity homolog in Drosophila. Development. 124:1997;1723-1732.
19. Holland ND, Holland LZ, Kozmik Z. An amphioxus Pax gene, AmphiPax-1, expressed in embryonic endoderm, but not in mesoderm: implications for evolution of class I paired box genes. Mol Mar Biol Biotechnol. 4:1995;206-214.
20. Kozmik Z, Holland ND, Kalousova A, Paces J, Schubert M, Holland LZ. Characterization of an amphioxus paired box gene, AmphiPax2/5/8: developmental expression patterns in optic support cells, nephridium, thyroid-like structures and pharyngeal gill slits, but not in the midbrain-hindbrain boundary region. Development. 126:1999;1295-1304.
21. Panopoulou GD, Clark MD, Holland LZ, Lehrach H, Holland ND. AmphiBMP2/4, an amphioxus bone morphogenetic protein closely related to Drosophila decapentaplegic and vertebrate BMP2 and BMP4: insights into evolution of dorsoventral axis specification. Dev Dynam. 213:1998;130-139.
22. Shimeld SM. The evolution of the hedgehog gene family in chordates: insights from amphioxus hedgehog. Dev Genes Evol. 209:1999;40-47.
23. Chan SJ, Cao Q-P, Steiner DF. Evolution of the insulin superfamily: cloning of a hybrid insulin/insulin-like growth factor cDNA from amphioxus. Proc Natl Acad Sci USA. 87:1990;9319-9323.
24. Roberts RG, Bobrow M. Dystrophins in vertebrates and invertebrates. Hum Mol Genet. 7:1998;589-595.
25. Luke GN, Holland PWH. Amphioxus type I keratin cDNA and the evolution of intermediate filament genes. J Exp Zool (Mol Evol Dev). 285:1999;50-56.
26. Shimeld SM. Characterisation of amphioxus HNF-3 genes: conserved expression in the notochord and floor plate. Dev Biol. 183:1997;74-85.
27. Sutherland D, McClellan JS, Milner D, Soong W, Axon N, Sanders M, Hester A, Kao YH, Poczatek T, Routt S, Pezzementi L. Two cholinesterase activities and genes are present in amphioxus. J Exp Zool. 277:1997;213-229.
28. Araki I, Terazawa K, Satoh N. Duplication of an amphioxus myogenic bHLH gene is independent of vertebrate myogenic bHLH gene duplication. Gene. 171:1996;231-236.
29. Kusakabe R, Satoh N, Holland LZ, Kusakabe T. Genomic organization and evolution of actin genes in the amphioxus Branchiostoma belcheri and Branchiostoma floridae. Gene. 227:1999;1-10.
30. Holland PWH, Korschorz B, Holland LZ, Herrmann BG. Conservation of Brachyury (T) genes in amphioxus and vertebrates: developmental and evolutionary implications. Development. 121:1995;4283-4291.
31. Patton SJ, Luke GN, Holland PWH. Complex history of a chromosomal paralogy regions: insights from amphioxus aromatic amino acid hydroxylase genes and insulin-related genes. Mol Biol Evol. 15:1998;1373-1380.
32. Smith MW, Doolittl RF. A comparison of evolutionary rates of the two kinds of superoxide dismutase. J Mol Evol. 34:1992;175-184.
33. Holland PWH, Garcia-Fernàndez J, Williams NA, Sidow A. Gene duplications and the origins of vertebrate development. Dev Suppl. 1994;125-133.
34. Sharman AC, Holland PWH. Conservation, duplication and divergence of developmental genes during chordate evolution. Neth J Zool. 46:1996;47-67.
35. Simmen MW, Leitgeb S, Clark VH, Jones SJM, Bird A. Gene number in an invertebrate chordate, Ciona intestinalis. Proc Natl Acad Sci USA. 95:1997;4437-4440.
36. Lundin L. Evolution of the vertebrate genome as reflected in paralogous chromosomal regions in man and the house mouse. Genomics. 16:1993;1-19.
37. Sidow A. Diversification of the Wnt gene family on the ancestral lineage of vertebrates. Proc Natl Acad Sci USA. 89:1992;5098-5210.
38. Moran JV, DeBerardinis RJ, Kazazian HH. Exon shuffling by L1 retrotranspositon. Science. 283:1999;1530-1534.
39. Holden C. Double dose of DNA. Science. 285:1999;195.
40. Bird AP. Gene number, noise reduction and biological complexity. Trends Genet. 11:1995;94-100.
41. Krakauer DC, Nowak M. Evolutionary preservation of redundant duplicated genes. Semin Cell Dev Biol. 1999.
42. Shimeld SM. Gene function, gene networks and the fate of duplicated genes. Semin Cell Dev Biol. 1999.
43. Holland PWH. Homeobox genes in vertebrate evolution. BioEssays. 14:1992;267-273.
44. Force A, Lynch M, Pickett FB, Amores A, Yan YL, Postlethwait J. Preservation of duplicate genes by complementary, degenerative mutations. Genetics. 151:1999;1531-1545.
45. Jagla K, Jagla T, Heitzler P, Dretzen G, Bellard F, Bellard M. Ladybird, a tandem of homeobox genes that maintain late wingless expression in terminal and dorsal epidermis of the Drosophila embryo. Development. 124:1997;91-100.