Proline-rich sequence recognition: II. Proteomics analysis of Tsg101 ubiquitin-E2-like variant (UEV) interactions

Molecular and Cellular Proteomics

Volumn 8, Issue 11, 2009, Pages 2474-2486

  Schlundt, Andreas ^a   Sticht, Jana ^a   Piotukh, Kirill ^a   Kosslick, Daniela ^a   Jahnke, Nadin ^b   Keller, Sandro ^b   Schuemann, Michael ^b   Krause, Eberhard ^b   Freund, Christian ^a  

^a FREIE UNIVERSITÄT BERLIN   (Germany)

^b LEIBNIZ INSTITUT FÜR MOLEKULARE PHARMAKOLOGIE   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

MESSENGER RNA; PROLINE; TUMOR SUSCEPTIBILITY GENE 101 PROTEIN; UBIQUITIN;

AMINO ACID SEQUENCE; ARTICLE; CELL LYSATE; HUMAN; HUMAN CELL; ISOTOPE LABELING; MASS SPECTROMETRY; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN DOMAIN; PROTEIN MOTIF; PROTEOMICS; SPLICEOSOME;

AMINO ACID MOTIFS; BINDING SITES; CLONING, MOLECULAR; DNA-BINDING PROTEINS; ENDOSOMAL SORTING COMPLEXES REQUIRED FOR TRANSPORT; HELA CELLS; HUMANS; MASS SPECTROMETRY; PEPTIDE LIBRARY; PROLINE; PROTEIN STRUCTURE, TERTIARY; PROTEOME; PROTEOMICS; RNA, MESSENGER; TRANSCRIPTION FACTORS; UBIQUITIN-CONJUGATING ENZYMES;

EID: 72149097903     PISSN: 15359476     EISSN: None     Source Type: Journal    
DOI: 10.1074/mcp.M800337-MCP200     Document Type: Article

References (48)

1. Li, L., and Cohen, S. N. (1996) Tsg101: a novel tumor susceptibility gene isolated by controlled homozygous functional knockout of allelic loci in mammalian cells. Cell 85, 319-329 (Pubitemid 26160704)
2. Zhong, Q., Chen, Y., Jones, D., and Lee, W. H. (1998) Perturbation of TSG101 protein affects cell cycle progression. Cancer Res. 58, 2699-2702 (Pubitemid 28311892)
3. Xie, W., Li, L., and Cohen, S. N. (1998) Cell cycle-dependent subcellular localization of the TSG101 protein and mitotic and nuclear abnormalities associated with TSG101 deficiency. Proc. Natl. Acad. Sci. U.S.A. 95, 1595-1600
4. Watanabe, M., Yanagi, Y., Masuhiro, Y., Yano, T., Yoshikawa, H., Yanagisawa, J., and Kato, S. (1998) A putative tumor suppressor, TSG101, acts as a transcriptional suppressor through its coiled-coil domain. Biochem. Biophys. Res. Commun. 245, 900-905
5. Babst, M., Odorizzi, G., Estepa, E. J., and Emr, S. D. (2000) Mammalian tumor susceptibility gene 101 (TSG101) and the yeast homologue, Vps23p, both function in late endosomal trafficking. Traffic 1, 248-258
6. VerPlank, L., Bouamr, F., LaGrassa, T. J., Agresta, B., Kikonyogo, A., Leis, J., and Carter, C. A. (2001) Tsg101, a homologue of ubiquitin-conjugating (E2) enzymes, binds the L domain in HIV type 1 Pr55(Gag). Proc. Natl. Acad. Sci. U.S.A. 98, 7724-7729
7. Garrus, J. E., von Schwedler, U. K., Pomillos, O. W., Morham, S. G., Zavitz, K. H., Wang, H. E., Wettstein, D. A., Stray, K. M., Côté, M., Rich, R. L., Myszka, D. G., and Sundquist, W. I. (2001) Tsg101 and the vacuolar protein sorting pathway are essential for HIV-1 budding. Cell 107, 55-65 (Pubitemid 32972037)
8. Pomillos, O., Alam, S. L., Rich, R. L., Myszka, D. G., Davis, D. R., and Sundquist, W. I. (2002) Structure and functional interactions of the Tsg101 UEV domain. EMBO J. 21, 2397-2406 (Pubitemid 34546712)
9. Freed, E. O. (2002) Viral late domains. J. Virol. 76, 4679-4687
10. Williams, R. L., and Urbé, S. (2007) The emerging shape of the ESCRT machinery. Nat. Rev. Mol. Cell Biol. 8, 355-368
11. Hurley, J. H. (2008) ESCRT complexes and the biogenesis of multivesicular bodies. Curr. Opin. Cell Biol. 20, 4-11
12. Bache, K. G., Brach, A., Mehlum, A., and Stenmark, H. (2003) Hrs regulates multivesicular body formation via ESCRT recruitment to endosomes. J. Cell Biol. 162, 435-442 (Pubitemid 36988552)
13. Katzmann, D. J., Stefan, C. J., Babst, M., and Emr, S. D. (2003) Vps27 recruits ESCRT machinery to endosomes during MVB sorting. J. Cell Biol. 162, 413-423 (Pubitemid 36988551)
14. Martin-Serrano, J., Yarovoy, A., Perez-Caballero, D., Bieniasz, P. D., and Yaravoy, A. (2003) Divergent retroviral late-budding domains recruit vacuolar protein sorting factors by using alternative adaptor proteins. Proc. Natl. Acad. Sci. U.S.A. 100, 12414-12419
15. von Schwedler, U. K., Stuchell, M., Müller, B., Ward, D. M., Chung, H. Y., Morita, E., Wang, H. E., Davis, T., He, G. P., Cimbora, D. M., Scott, A., Kräusslich, H. G., Kaplan, J., Morham, S. G., and Sundquist, W. I. (2003) The protein network of HIV budding. Cell 114, 701-713
16. Stuchell, M. D., Garrus, J. E., Müller, B., Stray, K. M., Ghaffarian, S., McKinnon, R., Kräusslich, H. G., Morham, S. G., and Sundquist, W. I. (2004) The human endosomal sorting complex required for transport (ESCRT-I) and its role in HIV-1 budding. J. Biol. Chem. 279, 36059-36071
17. Carlton, J. G., and Martin-Serrano, J. (2007) Parallels between cytokinesis and retroviral budding: a role for the ESCRT machinery. Science 316, 1908-1912
18. Morita, E., Sandrin, V., Chung, H. Y., Morham, S. G., Gygi, S. P., Rodesch, C. K., and Sundquist, W. I. (2007) Human ESCRT and AUX proteins interact with proteins of the midbody and function in cytokinesis. EMBO J. 26, 4215-4227 (Pubitemid 47525161)
19. Yanagida-Ishizaki, Y., Takei, T., Ishizaki, R., Imakagura, H., Takahashi, S., Shin, H. W., Katoh, Y., and Nakayama, K. (2008) Recruitment of Tom1L1/Srcasm to endosomes and the midbody by Tsg101. Cell Struct. Funct. 33, 91-100
20. Amit, I., Yakir, L., Katz, M., Zwang, Y., Marmor, M. D., Citri, A., Shtiegman, K., Alroy, I., Tuvia, S., Reiss, Y., Roubini, E., Cohen, M., Wides, R., Bacharach, E., Schubert, U., and Yarden, Y. (2004) Tal, a Tsg101-specific E3 ubiquitin ligase, regulates receptor endocytosis and retrovirus budding. Genes Dev. 18, 1737-1752 (Pubitemid 38938189)
21. McDonald, B., and Martin-Serrano, J. (2008) Regulation of Tsg101 expression by the steadiness box: a role of Tsg101-associated ligase. Mol. Biol. Cell 19, 754-763
22. Kim, B. Y., Olzmann, J. A., Barsh, G. S., Chin, L. S., and Li, L. (2007) Spongiform neurodegeneration-associated E3 ligase Mahogunin ubiquity-lates TSG101 and regulates endosomal trafficking. Mol. Biol. Cell 18, 1129-1142
23. Li, L., Uao, J., Ruland, J., Mak, T. W., and Cohen, S. N. (2001) A TSG101/MDM2 regulatory loop modulates MDM2 degradation and MDM2/p53 feedback control. Proc. Natl. Acad. Sci. U.S.A. 98, 1619-1624
24. Ruland, J., Sirard, C., Elia, A., MacPherson, D., Wakeham, A., Li, L., de la Pompa, J. L., Cohen, S. N., and Mak, T. W. (2001) p53 accumulation, defective cell proliferation, and early embryonic lethality in mice lacking tsg101. Proc. Natl. Acad. Sci. U.S.A. 98, 1859-1864
25. Ong, S. E., Blagoev, B., Kratchmarova, I., Kristensen, D. B., Steen, H., Pandey, A., and Mann, M. (2002) Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics. Mol. Cell. Proteomics 1, 376-386
26. Felici, F., Castagnoli, L., Musacchio, A., Jappelll, R., and Cesareni, G. (1991) Selection of antibody ligands from a large library of oligopeptides expressed on a multivalent exposition vector. J. Mol. Biol. 222, 301-310
27. Kramer, A., and Schneider-Mergener, J. (1998) Synthesis and screening of peptide libraries on continuous cellulose membrane supports. Methods Mol. Biol. 87, 25-39
28. Blagoev, B., and Mann, M. (2006) Quantitative proteomics to study mitogen-activated protein kinases. Methods 40, 243-250 (Pubitemid 44635297)
29. Klemm, C., Otto, S., Wolf, C., Haseloff, R. F., Beyemiann, M., and Krause, E (2006) Evaluation of the titanium dioxide approach for MS analysis of phosphopeptides. J. Mass Spectrom. 41, 1623-1632 (Pubitemid 46045801)
30. van den Ent, F., and Löwe, J. (2006) RF cloning: a restriction-free method for inserting target genes into plasmids. J. Biochem. Biophys. Methods 67, 67-74
31. Pomillos, O., Alam, S. L., Davis, D. R., and Sundquist, W. I. (2002) Structure of the Tsg101 UEV domain in complex with the PTAP motif of the HIV-1 p6 protein. Nat. Struct. Biol. 9, 812-817
32. Pomillos, O., Higginson, D. S., Stray, K. M., Fisher, R. D., Garnis, J. E., Payne, M., He, G. P., Wang, H. E., Morham, S. G., and Sundquist, W. I. (2003) HIV Gag mimics the Tsg101-recruiting activity of the human Hrs protein. J. Cell Biol. 162, 425-434 (Pubitemid 36992201)
33. Fujii, K., Hurley, J. H., and Freed, E. O. (2007) Beyond Tsg101: the role of Alix in 'ESCRTing' HIV-1. Nat. Rev. Microbiol. 5, 912-916
34. van Heugten, H. A., Thomas, A. A., and Voorma, H. O. (1992) Interaction of protein synthesis initiation factors with the mRNA cap structure. Biochimie 74, 463-475
35. Yamasaki, S., and Anderson, P. (2008) Reprogramming mRNA translation during stress. Curr. Opin. Cell Biol. 20, 222-226
36. Wilker, E. W., van Vugt, M. A., Artim, S. A., Huang, P. H., Petersen, C. P., Reinhardt, H. C., Feng, Y., Sharp, P. A., Sonenberg, N., White, F. M., and Yaffe, M. B. (2007) 14-3-3sigma controls mitotic translation to facilitate cytokinesis. Nature 446, 329-332 (Pubitemid 46426148)
37. Mangus, D. A., Evans, M. C., and Jacobson, A. (2003) Poly(A)-binding proteins: multifunctional scaffolds for the post-transcriptional control of gene expression. Genome Biol. 4, 223
38. Le, H., Tanguay, R. L., Balasta, M. L., Wei, C. C., Browning, K. S., Metz, A. M., Goss, D. J., and Gallie, D. R. (1997) Translation initiation factors elF-iso4G and elF-4B interact with the poly(A)-binding protein and increase its RNA binding activity. J. Biol. Chem. 272, 16247-16255
39. Mokas, S., Mills, J. R., Garreau, C., Fournier, M. J., Robert, F., Arya, P., Kaufman, R. J., Pelletier, J., and Mazroul, R. (2009) Uncoupling stress granule assembly and translation initiation inhibition. Mol. Biol. Cell 20, 2673-2683
40. Laroia, G., Cuesta, R., Brewer, G., and Schneider, R. J. (1999) Control of mRNA decay by heat shock-ubiquitin-proteasome pathway. Science 284, 499-502 (Pubitemid 29289625)
41. Andersen, P. L., Zhou, H., Pastushok, L., Moraes, T., McKenna, S., Ziola, B., Ellison, M. J., Dixit, V. M., and Xiao, W. (2005) Distinct regulation of Ubc13 functions by the two ubiquitin-conjugating enzyme variants Mms2 and Uev1A. J. Cell Biol. 170, 745-755 (Pubitemid 41242107)
42. Rodriguez, P. L., Sahay, S., Olabisi, O. O., and Whitehead, I. P. (2007) ROCK I-mediated activation of NF-kappaB by RhoB. Cell. Signal. 19, 2361-2369
43. Watson, P., Townley, A. K., Koka, P., Palmer, K. J., and Stephens, D. J. (2006) Sec16 defines endoplasmic reticulum exit sites and is required for secretory cargo export in mammalian cells. Traffic 7, 1678-1687 (Pubitemid 44742370)
44. Shimoi, W., Ezawa, I., Nakamoto, K., Uesaki, S., Gabreski, G., Aridor, M., Yamamoto, A., Nagahama, M., Tagaya, M., and Tani, K. (2005) p125 is localized in endoplasmic reticulum exit sites and involved in their organization. J. Biol. Chem. 280, 10141-10148
45. Bonifacino, J. S., and Hurley, J. H. (2008) Retromer. Curr. Opin. Cell Biol. 20, 427-436
46. Bürckstümmer, T., Bennett, K. L., Preradovic, A., Schütze, G., Hantschel, O., Superti-Furga, G., and Bauch, A. (2006) An efficient tandem affinity purification procedure for interaction proteomics in mammalian cells. Nat. Methods 3, 1013-1019 (Pubitemid 44782701)
47. Palencia, A., Martinez, J. C., Mateo, P. L., Luque, I., and Camara-Artigas, A. (2006) Structure of human TSG101 UEV domain. Acta Crystallogr. D Biol. Crystallogr. 62, 458-464
48. Kofler, M., Schuemann, M., Merz, C., Kosslick, D., Schlundt, A., Tannert, A., Schaefer, M., Lührmann, R., Krause, E., and Freund, C. (2009) Proline-rich sequence recognition: I. Marking GYF and WW domain assembly sites in early spliceosomal complexes. Mol. Cell. Proteomics 8, 2461-2473