Structural adaptation of serine hydroxymethyltransferase to low temperatures

International Journal of Biological Macromolecules

Volumn 46, Issue 1, 2010, Pages 37-46

  Siglioccolo, Alessandro ^a   Bossa, Francesco ^a   Pascarella, Stefano ^a  

^a SAPIENZA UNIVERSITY OF ROME   (Italy)

Author keywords

Electrostatic potential; Flexibility; Molecular evolution; Polarity; Psychrophile; Pyridoxal 5 phosphate; Serine hydroxymethyltransferase

Indexed keywords

GLYCINE HYDROXYMETHYLTRANSFERASE; TETRAHYDROFOLIC ACID;

AMINO ACID SEQUENCE; ARTICLE; BINDING SITE; CONTROLLED STUDY; ENZYME STRUCTURE; HYDROPHILICITY; HYDROPHOBICITY; HYPERTHERMOPHILE; LOW TEMPERATURE; NONHUMAN; NUCLEOTIDE SEQUENCE; TEMPERATURE ACCLIMATIZATION;

PSYCHROMONAS INGRAHAMII;

EID: 71849112061     PISSN: 01418130     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ijbiomac.2009.09.009     Document Type: Article

References (41)

1. D'Amico S., Gerday C., and Feller G. J. Biol. Chem. 276 (2001) 25791-25796
2. D'Amico S., Marx J.C., Gerday C., and Feller G. J. Biol. Chem. 278 (2003) 7891-7896
3. Feller G., and Gerday C. Nat. Rev. Microbiol. 1 (2003) 200-208
4. Russell R.J., Gerike U., Danson M.J., Hough D.W., and Taylor G.L. Structure 6 (1998) 351-361
5. Smalås A.O., Leiros H.K., Os V., and Willassen N.P. Biotechnol. Annu. Rev. 6 (2000) 1-57
6. Russell N.J. Adv. Biochem. Eng. Biotechnol. 61 (1998) 1-21
7. Marshall C.J. Trends Biotechnol. 15 (1997) 359-364
8. Vieille C., Burdette D.S., and Zeikus J.G. Biotechnol. Annu. Rev. 2 (1996) 1-83
9. Amadasi A., Bertoldi M., Contestabile R., Bettati S., Cellini B., di Salvo M.L., Borri-Voltattorni C., Bossa F., and Mozzarelli A. Curr. Med. Chem. 14 (2007) 1291-1324
10. Paiardini A., Gianese G., Bossa F., and Pascarella S. Proteins 50 (2003) 122-134
11. Gianese G., Bossa F., and Pascarella S. Proteins 47 (2002) 236-249
12. Szilágyi A., and Závodszky P. Structure 8 (2000) 493-504
13. Berezovsky I.N., and Shakhnovich E.I. Proc. Natl. Acad. Sci. U.S.A. 102 (2005) 12742-12747
14. Altschul S.F., Madden T.L., Schäffer A.A., Zhang J., Zhang Z., Miller W., and Lipman D.J. Nucleic Acids Res. 25 (1997) 3389-3402
15. Thompson J.D., Higgins D.G., and Gibson T.J. Nucleic Acids Res. 22 (1994) 4673-4680
16. Clamp M., Cuff J., Searle S.M., and Barton G.J. Bioinformatics 20 (2004) 426-742
17. Hooft R.W., Sander C., Scharf M., and Vriend G. Comput. Appl. Biosci. 12 (1996) 525-529
18. Fraczkiewicz R., and Braun W. J. Comp. Chem. 19 (1998) 319-333
19. Thorvaldsen S., Hjerde E., Fentonand C., and Willassen N.P. Extremophiles 11 (2007) 719-732
20. Kawashima S., Ogata H., and Kanehisa M. Nucleic Acids Res. 27 (1999) 368-369
21. Gromiha M.M., Oobatake M., and Sarai A. Biophys. Chem. 82 (1999) 51-67
22. Parthasarathy S., and Murthy M.R. Protein Sci. 6 (1997) 2561-2567
23. Altermark B., Thorvaldsen S., Moe E., Smalås A.O., and Willassen N.P. Comput. Biol. Chem. 31 (2007) 163-172
24. Šali A., and Blundell T.L. J. Mol. Biol. 234 (1993) 779-815
25. Sippl M.J. Proteins 17 (1993) 355-362
26. Wiederstein M., and Sippl M.J. Nucleic Acids Res. 35 (2007) W407-W410
27. Delano W.L. The PyMOL molecular graphics system (2002), DeLano Scientific, San Carlos, CA, USA
28. Balamurugan B., Roshan M.N.A., Shaahul Hameed B., Sumathi K., Senthilkumar R., Udayakumar A., Venkatesh Babu K.H., Kalaivani M., Sowmiya G., Sivasankari P., Saravanan S., Vasuki Ranjani C., Gopalakrishnan K., Selvakumar K.N., Jaikumar M., Brindha T., Michael D., and Sekar K. J. Appl. Crystallogr. 40 (2007) 773-777
29. Rother K., Hildebrand P.W., Goede A., Gruening B., and Preissner R. Nucleic Acids Res. 37 (2009) D393-D395 (Database issue)
30. Rocchia W., Alexov E., and Honig B. J. Phys. Chem. B 105 (2001) 6507-6514
31. Metpally R.P., and Reddy B.V. BMC Genomics 10 (2009) 11
32. Siddiqui K.S., and Cavicchioli R. Annu. Rev. Biochem. 75 (2006) 403-433
33. Chiuri R., Maiorano G., Rizzello A., del Mercato L.L., Cingolani R., Rinaldi R., Maffia M., and Pompa P.P. Biophys. J. 96 (2009) 1586-1596
34. Fields P.A. Comp. Biochem. Physiol. A: Mol. Integr. Physiol. 129 (2001) 417-431
35. Scarsdale J.N., Radaev S., Kazanina G., Schirch V., and Wright H.T. J. Mol. Biol. 296 (2000) 155-168
36. Brandsdal B.O., Smalås A.O., and Åqvist J. FEBS Lett. 499 (2001) 171-175
37. Chakravarty S., Wang L., and Sanchez R. Nucleic Acids Res. 33 (2005) 244-259
38. Tronelli D., Maugini E., Bossa F., and Pascarella S. FEBS J. 274 (2007) 595-608
39. Bhatt A.N., Khan M.Y., and Bhakuni V. Protein Sci. 13 (2004) 2184-2195
40. Bhatt A.N., Prakash K., Subramanya H.S., and Bhakuni V. Biochemistry 41 (2002) 12115-12123
41. Keskin O., Gursoy A., Maand B., and Nussinov R. Chem. Rev. 108 (2008) 1225-1244