Bacterial community composition of a wastewater treatment system reliant on N2 fixation

Applied Microbiology and Biotechnology

Volumn 79, Issue 2, 2008, Pages 285-292

  Reid, Nicola M ^a   Bowers, Tracey H ^a   Lloyd Jones, Gareth ^a  

^a SCION   (New Zealand)

Author keywords

16S; Biorefinery; Nitrogen fixation; qPCR; T RFLP; Wastewater

Indexed keywords

BACTERIA; BIOASSAY; NITROGEN FIXATION; ORGANIC CARBON; POLYMORPHISM; REDUNDANCY;

ORGANIC CARBON REMOVAL; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; TAXONOMIC UNITS;

WASTEWATER TREATMENT;

DISSOLVED OXYGEN; NITROGEN; ORGANIC CARBON; RNA 16S;

BACTERIUM; COMMUNITY COMPOSITION; MICROBIAL COMMUNITY; NITROGEN FIXATION; POLYMERASE CHAIN REACTION; WASTE TREATMENT; WASTEWATER;

ALPHAPROTEOBACTERIA; AMPLICON; ARTICLE; BACTERIAL FLORA; BACTERIUM IDENTIFICATION; BACTEROIDETES; BETAPROTEOBACTERIA; MICROBIAL COMMUNITY; MOLECULAR CLONING; NITROGEN FIXATION; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PHYLUM; POLYMERASE CHAIN REACTION; QUANTITATIVE ASSAY; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; RNA GENE; RNA SEQUENCE; SEQUENCE ANALYSIS; TAXONOMY; WASTE WATER MANAGEMENT;

BACTERIA; DNA, RIBOSOMAL; INDUSTRIAL WASTE; RNA, RIBOSOMAL, 16S; SEWAGE; WASTE DISPOSAL, FLUID; WASTE MANAGEMENT; WATER MICROBIOLOGY;

ALPHAPROTEOBACTERIA; BACTERIA (MICROORGANISMS); BACTEROIDETES; BETAPROTEOBACTERIA;

EID: 42549104168     PISSN: 01757598     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00253-008-1413-6     Document Type: Article

References (36)

1. Bruce ME, Clark TA (1994) Klebsiella and nitrogen fixation in pulp and paper mill effluents and treatment systems. Appita J 47:231-237
2. Clark TA, Dare PH, Bruce MA (1997) Nitrogen fixation in an aerated stabilisation basin treating bleached kraft mill wastewater. Water Environ Res 69:1039-1046
3. Dennis MA, Cotter ML, Slade AH, Gapes DJ (2004) The performance of a nitrogen-fixing SBR. Water Sci Technol 50:269-278
4. Dunbar J, Ticknor LO, Kuske CR (2001) Phylogenetic specificity and reproducibility and new method for analysis of terminal restriction fragment profiles of 16S rRNA genes from bacterial communities. Appl Environ Microbiol 67:190-197
5. FAO (2007) State of the world's forests. Rome
6. Felsenstein J (1989) PHYLIP-phylogeny inference package (version 3.2). Cladistics 5:164-166
7. Gapes DJ, Frost NM, Clark TA, Dare PH, Hunter RG, Slade AH (1999) Nitrogen fixation in the treatment of pulp and paper wastewaters. Water Sci Technol 40:85-92
8. Gapes DJ, Clark TA, Frost NM, Slade AH (2003) Wastewater treatment process for nitrogen-deficient feed in controlled environments. US Patent 6,623,641
9. Gauthier F, Neufeld JD, Driscoll BT, Archibald FS (2000) Coliform bacteria and nitrogen fixation in pulp and paper mill effluent treatment systems. Appl Environ Microbiol 66:5155-5160
10. Gentile M, Yan T, Tiquia SM, Fields MW, Nyman J, Zhou J, Criddle CS (2006) Stability in a denitrifying fluidized bed reactor. Microb Ecol 52:311-321
11. Gentile ME, Jessup CM, Nyman JL, Criddle CS (2007) Correlation of functional instability and community dynamics in denitrifying dispersed-growth reactors. Appl Environ Microbiol 73:680-690
12. Gilbride KA, Fulthorpe RR (2004) A survey of the composition and diversity of bacterial populations in bleached kraft pulp-mill wastewater secondary treatment systems. Can J Microbiol 50:633-644
13. Gilbride KA, Frigon D, Cesnik A, Gawat J, Fulthorpe RR (2006) Effect of chemical and physical parameters on a pulp mill biotreatment bacterial community. Water Res 40:775-787
14. Hardy RWF, Eaglesham A, Shelton A (2007) Agriculture & forestry for energy, chemicals, & materials; the road forward. Ind Biotechnol 3:133-137
15. Kaewpipat K, Grady CP Jr (2002) Microbial population dynamics in laboratory-scale activated sludge reactors. Water Sci Technol 46:19-27
16. 2-fixing bacteria. Biotechnol Lett 24:1281-1284
17. Kämpfer P, Erhart R, Beimfohr C, Böhringer J, Wagner M, Amann R (1996) Characterization of bacterial communities from activated sludge: culture-dependent numerical identification versus in situ identification using group-and genus-specific rRNA-targeted oligonucleotide probes. Microb Ecol 32:101-121
18. Knowles R, Neufield R, Simpson S (1974) Acetylene reduction (nitrogen fixation) by pulp and paper mill effluents and by Klebsiella isolated from effluents and environmental situations. J Appl Microbiol 28:608-613
19. Lane DJ (1991) 16S/23S rRNA sequencing. In: Stackebrandt E, Goodfellow M (eds) Nucleic acid techniques in bacterial systematics. Wiley, New York, pp 115-175
20. LaPara TM, Nakatsu CH, Pantea LM, Alleman JE (2002) Stability of the bacterial communities supported by a seven-stage biological process treating pharmaceutical wastewater as revealed by PCR-DGGE. Water Res 36:638-646
21. Malmqvist Å, Welander T, Moore E, Ternström A, Molin G, Stenström I-M (1994) Ideonella dechloratans gen. nov. sp. nov., a new bacterium capable of growing anaerobically with chlorate as an electron acceptor. Syst Appl Microbiol 17:58-64
22. O'Sullivan LA, Rinna J, Humphreys G, Weightman AJ, Fry JC (2006) Culturable phylogenetic diversity of the phylum 'Bacteroidetes' from river epilithon and coastal water and description of novel members of the family Flavobacteriaceae: Epiithonimonas tenax gen. nov., sp. nov. and Persicivirga xylanidelens gen. nov., sp. nov. Int J Syst Evol Microbiol 56:169-180
23. Park J-W, Crowley DE (2005) Normalization of soil DNA extraction for accurate quantification of target genes by real-time PCR and DGGE. BioTechniques 38:579-585
24. Pfaffl MW (2001) A new mathematical model for relative quantification in real-time RT-PCR. Nucl Acids Res 29:e45
25. Pokhrel D, Viraraghavan T (2004) Treatment of pulp and paper mill wastewater-a review. Sci Total Environ 333:37-58
26. Pratt S, Tan M, Gapes D, Shilton A (2007) Development and examination of a granular nitrogen-fixing wastewater treatment system. Process Biochem 42:863-872
27. Röling WFM, Milner MG, Jones DM, Lee K, Daniel F, Swannell RJP, Head IM (2002) Robust hydrocarbon degradation and dynamics of bacterial communities during nutrient-enhanced oil spill bioremediation. Appl Environ Microbiol 68:5537-5548
28. Schmitt-Wagner D, Friedrich MW, Wagner B, Brune A (2003) Axial dynamics, stability, and interspecies similarity of bacterial community structure in the highly compartmentalized gut of soil-feeding termites (Cubitermes spp). Appl Environ Microbiol 69:6018-6024
29. Schwarz JIK, Eckert W, Conrad R (2007) Community structure of Archaea and Bacteria in a profundal lake sediment Lake Kinneret (Israel). Syst Appl Microbiol 30:239-254
30. Slade AH, Anderson SM, Evans BE (2003) Nitrogen fixation in the activated sludge treatment of thermomechanical pulping wastewater: effect of dissolved oxygen. Water Sci Technol 48:1-8
31. Smith NR, Yu Z, Mohn WW (2003) Stability of the bacterial community in a pulp mill effluent treatment system during normal operation and a system shutdown. Water Res 37:4873-4884
32. Soetaert W, Vandamme E (2006) The impact of industrial biotechnology. Biotechnol J 1:756-769
33. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucl Acids Res 25:4876-4882
34. Wagner M, Loy A (2002) Bacterial community composition and function in sewage treatment systems. Curr Opin Biotech 13:218-227
35. Yu Z, Mohn WW (2001) Bacterial diversity and community structure in an aerated lagoon revealed by ribosomal intergenic spacer analyses and 16S ribosomal DNA sequencing. Appl Environ Microbiol 67:1565-1574
36. Zhou J, Bruns MA, Tiedje JM (1996) DNA recovery from soils of diverse composition. Appl Environ Microbiol 62:316-322