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Volumn 683, Issue 1-2, 2010, Pages 57-67

Nucleotide excision repair genes are expressed at low levels and are not detectably inducible in Caenorhabditis elegans somatic tissues, but their function is required for normal adult life after UVC exposure

Author keywords

Caenorhabditis elegans; DNA damage response; Gene environment interaction; Global gene expression; Nucleotide excision repair

Indexed keywords

ARTICLE; CAENORHABDITIS ELEGANS; CONTROLLED STUDY; DNA DAMAGE; DNA REPAIR; EXCISION REPAIR; GENE EXPRESSION; GENOTYPE ENVIRONMENT INTERACTION; LIFESPAN; NONHUMAN; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN FUNCTION; PROTEIN INDUCTION; RADIATION EXPOSURE; RADIOSENSITIVITY; SOMATIC CELL GENETICS; STRAIN DIFFERENCE; ULTRAVIOLET C RADIATION; WILD TYPE;

EID: 71549131286     PISSN: 00275107     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.mrfmmm.2009.10.008     Document Type: Article
Times cited : (45)

References (55)
  • 1
    • 0034732890 scopus 로고    scopus 로고
    • Genomic heterogeneity of nucleotide excision repair
    • Balajee A.S., and Bohr V.A. Genomic heterogeneity of nucleotide excision repair. Gene 250 (2000) 15-30
    • (2000) Gene , vol.250 , pp. 15-30
    • Balajee, A.S.1    Bohr, V.A.2
  • 2
    • 0037115936 scopus 로고    scopus 로고
    • Subpathways of nucleotide excision repair and their regulation
    • Hanawalt P.C. Subpathways of nucleotide excision repair and their regulation. Oncogene 21 (2002) 8949-8956
    • (2002) Oncogene , vol.21 , pp. 8949-8956
    • Hanawalt, P.C.1
  • 3
    • 0035234162 scopus 로고    scopus 로고
    • Xeroderma pigmentosum and related disorders: defects in DNA repair and transcription
    • Berneburg M., and Lehmann A.R. Xeroderma pigmentosum and related disorders: defects in DNA repair and transcription. Adv. Genet. 43 (2001) 71-102
    • (2001) Adv. Genet. , vol.43 , pp. 71-102
    • Berneburg, M.1    Lehmann, A.R.2
  • 7
    • 33644619706 scopus 로고    scopus 로고
    • Prokaryotic nucleotide excision repair: the UvrABC system
    • Truglio J.J., Croteau D.L., Van Houten B., and Kisker C. Prokaryotic nucleotide excision repair: the UvrABC system. Chem. Rev. 106 (2006) 233-252
    • (2006) Chem. Rev. , vol.106 , pp. 233-252
    • Truglio, J.J.1    Croteau, D.L.2    Van Houten, B.3    Kisker, C.4
  • 9
    • 54449091296 scopus 로고    scopus 로고
    • DNA repair
    • Community T.C.e.R. (Ed) http://www.wormbook.org
    • O'Neil N., and Rose A. DNA repair. In: Community T.C.e.R. (Ed). WormBook (2005). http://www.wormbook.org/ http://www.wormbook.org
    • (2005) WormBook
    • O'Neil, N.1    Rose, A.2
  • 11
    • 0033679966 scopus 로고    scopus 로고
    • A conserved checkpoint pathway mediates DNA damage-induced apoptosis and cell cycle arrest in C. elegans
    • Gartner A., Milstein S., Ahmed S., Hodgkin J., and Hengartner M.O. A conserved checkpoint pathway mediates DNA damage-induced apoptosis and cell cycle arrest in C. elegans. Mol. Cell 5 (2000) 435-443
    • (2000) Mol. Cell , vol.5 , pp. 435-443
    • Gartner, A.1    Milstein, S.2    Ahmed, S.3    Hodgkin, J.4    Hengartner, M.O.5
  • 12
    • 33645293158 scopus 로고    scopus 로고
    • Checkpoint silencing during the DNA damage response in Caenorhabditis elegans embryos
    • Holway A.H., Kim S.H., La Volpe A., and Michael W.M. Checkpoint silencing during the DNA damage response in Caenorhabditis elegans embryos. J. Cell Biol. 172 (2006) 999-1008
    • (2006) J. Cell Biol. , vol.172 , pp. 999-1008
    • Holway, A.H.1    Kim, S.H.2    La Volpe, A.3    Michael, W.M.4
  • 13
    • 33746420647 scopus 로고    scopus 로고
    • Developmental modulation of nonhomologous end joining in Caenorhabditis elegans
    • Clejan I., Boerckel J., and Ahmed S. Developmental modulation of nonhomologous end joining in Caenorhabditis elegans. Genetics 173 (2006) 1301-1317
    • (2006) Genetics , vol.173 , pp. 1301-1317
    • Clejan, I.1    Boerckel, J.2    Ahmed, S.3
  • 14
    • 34249004315 scopus 로고    scopus 로고
    • The nucleotide excision repair pathway is required for UV-C-induced apoptosis in Caenorhabditis elegans
    • Stergiou L., Doukoumetzidis K., Sendoel A., and Hengartner M.O. The nucleotide excision repair pathway is required for UV-C-induced apoptosis in Caenorhabditis elegans. Cell Death Differ. 14 (2007) 1129-1138
    • (2007) Cell Death Differ. , vol.14 , pp. 1129-1138
    • Stergiou, L.1    Doukoumetzidis, K.2    Sendoel, A.3    Hengartner, M.O.4
  • 15
    • 0037206310 scopus 로고    scopus 로고
    • The Caenorhabditis elegans XPA homolog of human XPA
    • Park H.K., Yook J.S., Koo H.S., Choi I.S., and Ahn B. The Caenorhabditis elegans XPA homolog of human XPA. Mol. Cells 14 (2002) 50-55
    • (2002) Mol. Cells , vol.14 , pp. 50-55
    • Park, H.K.1    Yook, J.S.2    Koo, H.S.3    Choi, I.S.4    Ahn, B.5
  • 16
    • 33748894494 scopus 로고    scopus 로고
    • The relative roles of three DNA repair pathways in preventing Caenorhabditis elegans mutation accumulation
    • Denver D.R., Feinberg S., Steding C., Durbin M., and Lynch M. The relative roles of three DNA repair pathways in preventing Caenorhabditis elegans mutation accumulation. Genetics 174 (2006) 57-65
    • (2006) Genetics , vol.174 , pp. 57-65
    • Denver, D.R.1    Feinberg, S.2    Steding, C.3    Durbin, M.4    Lynch, M.5
  • 17
    • 40249084262 scopus 로고    scopus 로고
    • Longevity and resistance to stress correlate with DNA repair capacity in Caenorhabditis elegans
    • Hyun M., Lee J., Lee K., May A., Bohr V.A., and Ahn B. Longevity and resistance to stress correlate with DNA repair capacity in Caenorhabditis elegans. Nucleic Acids Res. 36 (2008) 1380-1389
    • (2008) Nucleic Acids Res. , vol.36 , pp. 1380-1389
    • Hyun, M.1    Lee, J.2    Lee, K.3    May, A.4    Bohr, V.A.5    Ahn, B.6
  • 18
    • 0023780523 scopus 로고
    • Radiation effects on lifespan in Caenorhabditis elegans
    • Johnson T.E., and Hartman P.S. Radiation effects on lifespan in Caenorhabditis elegans. J. Gerontol. 43 (1988) B137-B141
    • (1988) J. Gerontol. , vol.43
    • Johnson, T.E.1    Hartman, P.S.2
  • 19
    • 37549066986 scopus 로고    scopus 로고
    • Nucleotide excision repair and the degradation of RNA pol II by the Caenorhabditis elegans XPA and Rsp5 orthologues, RAD-3 and WWP-1
    • Astin J.W., O'Neil N.J., and Kuwabara P.E. Nucleotide excision repair and the degradation of RNA pol II by the Caenorhabditis elegans XPA and Rsp5 orthologues, RAD-3 and WWP-1. DNA Repair (Amst) 7 (2008) 267-280
    • (2008) DNA Repair (Amst) , vol.7 , pp. 267-280
    • Astin, J.W.1    O'Neil, N.J.2    Kuwabara, P.E.3
  • 20
    • 0020196749 scopus 로고
    • Radiation-sensitive mutants of Caenorhabditis elegans
    • Hartman P.S., and Herman R.K. Radiation-sensitive mutants of Caenorhabditis elegans. Genetics 102 (1982) 159-178
    • (1982) Genetics , vol.102 , pp. 159-178
    • Hartman, P.S.1    Herman, R.K.2
  • 21
    • 0021381651 scopus 로고
    • Uv Irradiation of wild-type and radiation-sensitive mutants of the nematode Caenorhabditis elegans-fertilities, survival, and parental effects
    • Hartman P.S. Uv Irradiation of wild-type and radiation-sensitive mutants of the nematode Caenorhabditis elegans-fertilities, survival, and parental effects. Photochem. Photobiol. 39 (1984) 169-175
    • (1984) Photochem. Photobiol. , vol.39 , pp. 169-175
    • Hartman, P.S.1
  • 22
    • 0024264083 scopus 로고
    • Ultraviolet mutagenesis of radiation-sensitive (rad) mutants of the nematode Caenorhabditis elegans
    • Coohill T., Marshall T., Schubert W., and Nelson G. Ultraviolet mutagenesis of radiation-sensitive (rad) mutants of the nematode Caenorhabditis elegans. Mutat. Res. 209 (1988) 99-106
    • (1988) Mutat. Res. , vol.209 , pp. 99-106
    • Coohill, T.1    Marshall, T.2    Schubert, W.3    Nelson, G.4
  • 24
    • 0024676687 scopus 로고
    • Excision repair of UV radiation-induced DNA damage in Caenorhabditis elegans
    • Hartman P.S., Hevelone J., Dwarakanath V., and Mitchell D.L. Excision repair of UV radiation-induced DNA damage in Caenorhabditis elegans. Genetics 122 (1989) 379-385
    • (1989) Genetics , vol.122 , pp. 379-385
    • Hartman, P.S.1    Hevelone, J.2    Dwarakanath, V.3    Mitchell, D.L.4
  • 25
    • 0027058492 scopus 로고
    • Molecular basis of loss-of-function mutations in the glp-1 gene of Caenorhabitis elegans
    • Kodoyianni V., Maine E.M., and Kimble J. Molecular basis of loss-of-function mutations in the glp-1 gene of Caenorhabitis elegans. Mol. Biol. Cell 3 (1992) 1199-1213
    • (1992) Mol. Biol. Cell , vol.3 , pp. 1199-1213
    • Kodoyianni, V.1    Maine, E.M.2    Kimble, J.3
  • 26
    • 0000182225 scopus 로고
    • Methods
    • Wood W. (Ed), Cold Spring Harbor Laboratory, Cold Spring Harbor, New York
    • Sulston J.E., and Hodgkin J. Methods. In: Wood W. (Ed). The Nematode Caenorhabditis elegans (1988), Cold Spring Harbor Laboratory, Cold Spring Harbor, New York 587-606
    • (1988) The Nematode Caenorhabditis elegans , pp. 587-606
    • Sulston, J.E.1    Hodgkin, J.2
  • 27
    • 0023701377 scopus 로고
    • Using the nematode Caenorhabditis elegans to predict mammalian acute lethality to metallic salts
    • Williams P.L., and Dusenbery D.B. Using the nematode Caenorhabditis elegans to predict mammalian acute lethality to metallic salts. Toxicol. Ind. Health 4 (1988) 469-478
    • (1988) Toxicol. Ind. Health , vol.4 , pp. 469-478
    • Williams, P.L.1    Dusenbery, D.B.2
  • 28
    • 33750124210 scopus 로고    scopus 로고
    • Techniques for analysis, sorting, and dispensing of C. elegans on the COPAS flow-sorting system
    • Pulak R. Techniques for analysis, sorting, and dispensing of C. elegans on the COPAS flow-sorting system. Methods Mol. Biol. 351 (2006) 275-286
    • (2006) Methods Mol. Biol. , vol.351 , pp. 275-286
    • Pulak, R.1
  • 29
    • 70349269589 scopus 로고    scopus 로고
    • Application of a mathematical model to describe the effects of chlorpyrifos on Caenorhabditis elegans development
    • Boyd W.A., Smith M.V., Kissling G.E., Rice J.R., Snyder D.W., Portier C.J., and Freedman J.H. Application of a mathematical model to describe the effects of chlorpyrifos on Caenorhabditis elegans development. PLoS One 4 (2009) e7024
    • (2009) PLoS One , vol.4
    • Boyd, W.A.1    Smith, M.V.2    Kissling, G.E.3    Rice, J.R.4    Snyder, D.W.5    Portier, C.J.6    Freedman, J.H.7
  • 31
    • 43449087018 scopus 로고    scopus 로고
    • Effects of genetic mutations and chemical exposures on Caenorhabditis elegans feeding: evaluation of a novel, high-throughput screening assay
    • Boyd W.A., McBride S.J., and Freedman J.H. Effects of genetic mutations and chemical exposures on Caenorhabditis elegans feeding: evaluation of a novel, high-throughput screening assay. PLoS One 2 (2007) e1259
    • (2007) PLoS One , vol.2
    • Boyd, W.A.1    McBride, S.J.2    Freedman, J.H.3
  • 32
    • 0034713926 scopus 로고    scopus 로고
    • Measuring gene-specific nucleotide excision repair in human cells using quantitative amplification of long targets from nanogram quantities of DNA
    • Van Houten B., Cheng S., and Chen Y. Measuring gene-specific nucleotide excision repair in human cells using quantitative amplification of long targets from nanogram quantities of DNA. Mutat. Res. 460 (2000) 91-94
    • (2000) Mutat. Res. , vol.460 , pp. 91-94
    • Van Houten, B.1    Cheng, S.2    Chen, Y.3
  • 33
    • 33744721699 scopus 로고    scopus 로고
    • Quantitative PCR-based measurement of nuclear and mitochondrial DNA damage and repair in mammalian cells
    • Santos J.H., Meyer J.N., Mandavilli B.S., and Van Houten B. Quantitative PCR-based measurement of nuclear and mitochondrial DNA damage and repair in mammalian cells. Methods Mol. Biol. 314 (2006) 183-199
    • (2006) Methods Mol. Biol. , vol.314 , pp. 183-199
    • Santos, J.H.1    Meyer, J.N.2    Mandavilli, B.S.3    Van Houten, B.4
  • 34
    • 33751419300 scopus 로고    scopus 로고
    • Extra-long PCR, an identifier of DNA adducts in single nematodes (Caenorhabditis elegans)
    • Neher D.A., and Sturzenbaum S.R. Extra-long PCR, an identifier of DNA adducts in single nematodes (Caenorhabditis elegans). Comp. Biochem. Physiol. C: Toxicol. Pharmacol. 144 (2006) 279-285
    • (2006) Comp. Biochem. Physiol. C: Toxicol. Pharmacol. , vol.144 , pp. 279-285
    • Neher, D.A.1    Sturzenbaum, S.R.2
  • 35
    • 0033610834 scopus 로고    scopus 로고
    • Cadmium-regulated genes from the nematode Caenorhabditis elegans. Identification and cloning of new cadmium-responsive genes by differential display
    • Liao V.H., and Freedman J.H. Cadmium-regulated genes from the nematode Caenorhabditis elegans. Identification and cloning of new cadmium-responsive genes by differential display. J. Biol. Chem. 273 (1998) 31962-31970
    • (1998) J. Biol. Chem. , vol.273 , pp. 31962-31970
    • Liao, V.H.1    Freedman, J.H.2
  • 37
    • 0000801240 scopus 로고    scopus 로고
    • Discovering regulatory and signalling circuits in molecular interaction networks
    • Ideker T., Ozier O., Schwikowski B., and Siegel A.F. Discovering regulatory and signalling circuits in molecular interaction networks. Bioinformatics 18 Suppl. 1 (2002) S233-S240
    • (2002) Bioinformatics , vol.18 , Issue.SUPPL. 1
    • Ideker, T.1    Ozier, O.2    Schwikowski, B.3    Siegel, A.F.4
  • 42
    • 0025054962 scopus 로고
    • Nucleotide excision repair in Escherichia coli
    • Van Houten B. Nucleotide excision repair in Escherichia coli. Microbiol. Rev. 54 (1990) 18-51
    • (1990) Microbiol. Rev. , vol.54 , pp. 18-51
    • Van Houten, B.1
  • 43
    • 0031800821 scopus 로고    scopus 로고
    • Induction of the SOS response increases the efficiency of global nucleotide excision repair of cyclobutane pyrimidine dimers, but not 6-4 photoproducts, in UV-irradiated Escherichia coli
    • Crowley D.J., and Hanawalt P.C. Induction of the SOS response increases the efficiency of global nucleotide excision repair of cyclobutane pyrimidine dimers, but not 6-4 photoproducts, in UV-irradiated Escherichia coli. J. Bacteriol. 180 (1998) 3345-3352
    • (1998) J. Bacteriol. , vol.180 , pp. 3345-3352
    • Crowley, D.J.1    Hanawalt, P.C.2
  • 44
    • 0034665724 scopus 로고    scopus 로고
    • Participation of stress-inducible systems and enzymes involved in BER and NER in the protection of Escherichia coli against cumene hydroperoxide
    • Asad L.M., Medeiros D.C., Felzenszwalb I., Leitao A.C., and Asad N.R. Participation of stress-inducible systems and enzymes involved in BER and NER in the protection of Escherichia coli against cumene hydroperoxide. Mutat. Res. 461 (2000) 31-40
    • (2000) Mutat. Res. , vol.461 , pp. 31-40
    • Asad, L.M.1    Medeiros, D.C.2    Felzenszwalb, I.3    Leitao, A.C.4    Asad, N.R.5
  • 45
    • 0030948027 scopus 로고    scopus 로고
    • Inducible nucleotide excision repair (NER) of UV-induced cyclobutane pyrimidine dimers in the cell cycle of the budding yeast Saccharomyces cerevisiae: evidence that inducible NER is confined to the G1 phase of the mitotic cell cycle
    • Scott A.D., and Waters R. Inducible nucleotide excision repair (NER) of UV-induced cyclobutane pyrimidine dimers in the cell cycle of the budding yeast Saccharomyces cerevisiae: evidence that inducible NER is confined to the G1 phase of the mitotic cell cycle. Mol. Gen. Genet. 254 (1997) 43-53
    • (1997) Mol. Gen. Genet. , vol.254 , pp. 43-53
    • Scott, A.D.1    Waters, R.2
  • 46
    • 0242331199 scopus 로고    scopus 로고
    • UV-induced de novo protein synthesis enhances nucleotide excision repair efficiency in a transcription-dependent manner in S. cerevisiae
    • Al-Moghrabi N.M., Al-Sharif I.S., and Aboussekhra A. UV-induced de novo protein synthesis enhances nucleotide excision repair efficiency in a transcription-dependent manner in S. cerevisiae. DNA Repair (Amst) 2 (2003) 1185-1197
    • (2003) DNA Repair (Amst) , vol.2 , pp. 1185-1197
    • Al-Moghrabi, N.M.1    Al-Sharif, I.S.2    Aboussekhra, A.3
  • 47
    • 33749176977 scopus 로고    scopus 로고
    • DNA damage induced nucleotide excision repair in Saccharomyces cerevisiae
    • Singh R.K., and Krishna M. DNA damage induced nucleotide excision repair in Saccharomyces cerevisiae. Mol. Cell. Biochem. 290 (2006) 103-112
    • (2006) Mol. Cell. Biochem. , vol.290 , pp. 103-112
    • Singh, R.K.1    Krishna, M.2
  • 48
    • 0345686480 scopus 로고    scopus 로고
    • Functional characterization of global genomic DNA repair and its implications for cancer
    • Hanawalt P.C., Ford J.M., and Lloyd D.R. Functional characterization of global genomic DNA repair and its implications for cancer. Mutat. Res. 544 (2003) 107-114
    • (2003) Mutat. Res. , vol.544 , pp. 107-114
    • Hanawalt, P.C.1    Ford, J.M.2    Lloyd, D.R.3
  • 49
    • 62349131315 scopus 로고    scopus 로고
    • DNA repair in mammalian cells: nucleotide excision repair: variations on versatility
    • Nouspikel T. DNA repair in mammalian cells: nucleotide excision repair: variations on versatility. Cell. Mol. Life Sci. 66 (2009) 994-1009
    • (2009) Cell. Mol. Life Sci. , vol.66 , pp. 994-1009
    • Nouspikel, T.1
  • 51
    • 0033573938 scopus 로고    scopus 로고
    • Global response of Saccharomyces cerevisiae to an alkylating agent
    • Jelinsky S.A., and Samson L.D. Global response of Saccharomyces cerevisiae to an alkylating agent. Proc. Natl. Acad. Sci. U.SA. 96 (1999) 1486-1491
    • (1999) Proc. Natl. Acad. Sci. U.SA. , vol.96 , pp. 1486-1491
    • Jelinsky, S.A.1    Samson, L.D.2
  • 52
    • 48549085585 scopus 로고    scopus 로고
    • Transcriptional profiling in C. elegans suggests DNA damage dependent apoptosis as an ancient function of the p53 family
    • Greiss S., Schumacher B., Grandien K., Rothblatt J., and Gartner A. Transcriptional profiling in C. elegans suggests DNA damage dependent apoptosis as an ancient function of the p53 family. BMC Genomics 9 (2008) 334
    • (2008) BMC Genomics , vol.9 , pp. 334
    • Greiss, S.1    Schumacher, B.2    Grandien, K.3    Rothblatt, J.4    Gartner, A.5
  • 53
    • 33947356736 scopus 로고    scopus 로고
    • Regulation of developmental rate and germ cell proliferation in Caenorhabditis elegans by the p53 gene network
    • Derry W.B., Bierings R., van Iersel M., Satkunendran T., Reinke V., and Rothman J.H. Regulation of developmental rate and germ cell proliferation in Caenorhabditis elegans by the p53 gene network. Cell Death Differ. 14 (2007) 662-670
    • (2007) Cell Death Differ. , vol.14 , pp. 662-670
    • Derry, W.B.1    Bierings, R.2    van Iersel, M.3    Satkunendran, T.4    Reinke, V.5    Rothman, J.H.6
  • 54
  • 55
    • 33744828285 scopus 로고    scopus 로고
    • Checkpoint proteins control survival of the postmitotic cells in Caenorhabditis elegans
    • Olsen A., Vantipalli M.C., and Lithgow G.J. Checkpoint proteins control survival of the postmitotic cells in Caenorhabditis elegans. Science 312 (2006) 1381-1385
    • (2006) Science , vol.312 , pp. 1381-1385
    • Olsen, A.1    Vantipalli, M.C.2    Lithgow, G.J.3


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