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1 = OH, conversion to various substituted phenoxy analogs was done via copper promoted arylation of phenol with aryl boronic acids following a procedure by: while synthesis of other aryl substituted benzyloxy analogs was accomplished either via alkylations with benzyl bromides and cesium carbonate in DMF, or Mitsunobu reactions with 'benzyl type' alcohols, triphenylphosphine and diisopropyl azodicarboxylate (DIAD).
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1 = OH, conversion to various substituted phenoxy analogs was done via copper promoted arylation of phenol with aryl boronic acids following a procedure by:. Evans D.A., Katz J.L., and West T.R. Tetrahedron Lett. 39 (1998) 2937 while synthesis of other aryl substituted benzyloxy analogs was accomplished either via alkylations with benzyl bromides and cesium carbonate in DMF, or Mitsunobu reactions with 'benzyl type' alcohols, triphenylphosphine and diisopropyl azodicarboxylate (DIAD).
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note
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2(dppf), aryl boronates and potassium phosphate in 1,4-dioxane. This procedure was also used to explore aryl hydrophobes at C-6 as depicted in Scheme 2.
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71049116343
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note
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50 value of a positive internal control was within standard deviation range.
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Acid replacements on thumb domain inhibitors have been described in:
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Acid replacements on thumb domain inhibitors have been described in:. Stansfield I., Pompei M., Conte I., Ercolani C., Migliaccio G., Jairaj M., Guiliano C., Rowley M., and Narjes F. Bioorg. Med. Chem. Lett. 17 (2007) 5143
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The X-ray structure of an indole-based inhibitor that binds to the finger-loop region of NS5B (PDB access code: 2brk; Di Marco, S, Volpari, C, Tomei, L, Altamura, S, Harper, S, Narjes, F, Koch, U, Rowley, M, De Francesco, R, Migliaccio, G, Carfi, A, J. Biol. Chem. 2005, 280, 29765) was utilized as the frame of reference. In preparation for docking, all ligand and water molecules were deleted and hydrogen atoms were added and minimized using Macromodel as implemented in Maestro 8.5 (Schrödinger, LLC, New York, NY, 2009, Docking of 16f to NS5B was performed using Glide XP (Halgren, T. A, Murphy, R. B, Friesner, R. A, Beard, H. S, Frye, L. L, Pollard, W. T, Banks, J. L. J. Med. Chem. 2004, 47, 1750; Friesner, R. A, Banks, J. L, Murphy, R. B, Halgren, T. A, Klicic, J. J, Mainz, D. T, Repasky, M. P, Knoll, E. H, Shelley, M, Perry, J. K, Shaw, D. E, Francis, P, Shenkin, P. S. J. Med. Chem. 2004, 47, 1739, An inner box region the ligand midpoint remains wi
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The X-ray structure of an indole-based inhibitor that binds to the finger-loop region of NS5B (PDB access code: 2brk; Di Marco, S., Volpari, C., Tomei, L., Altamura, S., Harper, S., Narjes, F., Koch, U., Rowley, M., De Francesco, R., Migliaccio, G., Carfi, A., J. Biol. Chem. 2005, 280, 29765) was utilized as the frame of reference. In preparation for docking, all ligand and water molecules were deleted and hydrogen atoms were added and minimized using Macromodel as implemented in Maestro 8.5 (Schrödinger, LLC, New York, NY, 2009). Docking of 16f to NS5B was performed using Glide XP (Halgren, T. A.; Murphy, R. B.; Friesner, R. A.; Beard, H. S.; Frye, L. L.; Pollard, W. T.; Banks, J. L. J. Med. Chem. 2004, 47, 1750; Friesner, R. A.; Banks, J. L.; Murphy, R. B.; Halgren, T. A.; Klicic, J. J.; Mainz, D. T.; Repasky, M. P.; Knoll, E. H.; Shelley, M.; Perry, J. K.; Shaw, D. E.; Francis, P.; Shenkin, P. S. J. Med. Chem. 2004, 47, 1739.) An inner box region (the ligand midpoint remains within this box during docking) of 10 Å and outer box region of 24 Å were used. The induced-fit docking protocol (Sherman, W.; Day, T.; Jacobson, M. P.; Friesner, R. A.; Farid, R. J. Med. Chem. 2006, 49, 534), IFD, was used to perturb the initial NS5B model in the presence of the docked ligand 16f, while allowing a flexible adaptation of the protein environment upon compound binding. All the options used during IFD were standard, as provided by the python interface in Maestro 8.5.
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