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Volumn 54, Issue 1, 2010, Pages 1-9

Molecular phylogenetics and historical biogeography of Rhinolophus bats

Author keywords

Biogeography; DIVA; Phylogeny; Relaxed Bayesian molecular clock; Rhinolophus

Indexed keywords

MITOCHONDRIAL DNA;

EID: 70649093805     PISSN: 10557903     EISSN: 10959513     Source Type: Journal    
DOI: 10.1016/j.ympev.2009.09.021     Document Type: Article
Times cited : (64)

References (58)
  • 1
    • 0000501656 scopus 로고
    • Information theory as an extension of the maximum likelihood principle
    • Petrov B.N., and Csaki F. (Eds), Akademiai Kiado, Budapest
    • Akaike H. Information theory as an extension of the maximum likelihood principle. In: Petrov B.N., and Csaki F. (Eds). Second International Symposium on Information Theory (1973), Akademiai Kiado, Budapest
    • (1973) Second International Symposium on Information Theory
    • Akaike, H.1
  • 3
    • 12744271922 scopus 로고    scopus 로고
    • BlastAlign: a program that uses blast to align problematic nucleotide sequences
    • Belshaw R., and Katzourakis A. BlastAlign: a program that uses blast to align problematic nucleotide sequences. Bioinformatics 21 (2005) 122-123
    • (2005) Bioinformatics , vol.21 , pp. 122-123
    • Belshaw, R.1    Katzourakis, A.2
  • 4
    • 0000359060 scopus 로고
    • Phenetic relationships among bats of the family Rhinolophidae
    • Bogdanowicz W. Phenetic relationships among bats of the family Rhinolophidae. Acta Theriol. 37 (1992) 213-240
    • (1992) Acta Theriol. , vol.37 , pp. 213-240
    • Bogdanowicz, W.1
  • 5
    • 84977958754 scopus 로고
    • Phylogenetic analysis of the bat family Rhinolophidae
    • Bogdanowicz W., and Owen R.D. Phylogenetic analysis of the bat family Rhinolophidae. Z. Zool. Syst. Evolutionforsch. 30 (1992) 142-160
    • (1992) Z. Zool. Syst. Evolutionforsch. , vol.30 , pp. 142-160
    • Bogdanowicz, W.1    Owen, R.D.2
  • 8
    • 23944460316 scopus 로고    scopus 로고
    • A nuclear DNA phylogenetic perspective on the evolution of echolocation and historical biogeography of extant bats (Chiroptera)
    • Eick G.N., Jacobs D.S., and Matthee C.A. A nuclear DNA phylogenetic perspective on the evolution of echolocation and historical biogeography of extant bats (Chiroptera). Mol. Biol. Evol. 22 (2005) 1869-1886
    • (2005) Mol. Biol. Evol. , vol.22 , pp. 1869-1886
    • Eick, G.N.1    Jacobs, D.S.2    Matthee, C.A.3
  • 9
    • 84983540175 scopus 로고
    • The retention index and the rescaled consistency index
    • Farris J.S. The retention index and the rescaled consistency index. Cladistics 5 (1989) 417-419
    • (1989) Cladistics , vol.5 , pp. 417-419
    • Farris, J.S.1
  • 10
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: an approach using the bootstrap
    • Felsenstein J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39 (1985) 783-791
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 11
    • 70649101406 scopus 로고    scopus 로고
    • Griekspoor, A, Groothuis, T, 2005. 4Peaks version 1.6. Available from
    • Griekspoor, A., Groothuis, T., 2005. 4Peaks version 1.6. Available from: .
  • 12
    • 3242878257 scopus 로고    scopus 로고
    • Phylogeny and biogeography of the horseshoe bats
    • Csorba G., Ujhelyi P., and Thomas N. (Eds), Alana Books
    • Guillén-Servent A., Francis C.M., and Ricklefs R.E. Phylogeny and biogeography of the horseshoe bats. In: Csorba G., Ujhelyi P., and Thomas N. (Eds). Horseshoe Bats of the World (2003), Alana Books 160
    • (2003) Horseshoe Bats of the World , pp. 160
    • Guillén-Servent, A.1    Francis, C.M.2    Ricklefs, R.E.3
  • 14
    • 0025764044 scopus 로고
    • Evolution of the cytochrome b gene of mammals
    • Irwin D.M., Kocher T.D., and Wilson A.C. Evolution of the cytochrome b gene of mammals. J. Mol. Evol. 32 (1991) 128-144
    • (1991) J. Mol. Evol. , vol.32 , pp. 128-144
    • Irwin, D.M.1    Kocher, T.D.2    Wilson, A.C.3
  • 15
    • 0027333477 scopus 로고
    • Tertiary mammal evolution in the context of changing climates, vegetation, and tectonic events
    • Janis C.M. Tertiary mammal evolution in the context of changing climates, vegetation, and tectonic events. Annu. Rev. Ecol. Syst. 24 (1993) 467-500
    • (1993) Annu. Rev. Ecol. Syst. , vol.24 , pp. 467-500
    • Janis, C.M.1
  • 17
    • 0034621871 scopus 로고    scopus 로고
    • Parabasalian flagellates are ancient eukaryotes
    • Keeling P.J., and Palmer J.D. Parabasalian flagellates are ancient eukaryotes. Nature 405 (2000) 635-637
    • (2000) Nature , vol.405 , pp. 635-637
    • Keeling, P.J.1    Palmer, J.D.2
  • 19
    • 84963036271 scopus 로고
    • Quantitative phylogenetics and the evolution of anurans
    • Kluge A.G., and Farris J.S. Quantitative phylogenetics and the evolution of anurans. Syst. Zool. 18 (1969) 1-32
    • (1969) Syst. Zool. , vol.18 , pp. 1-32
    • Kluge, A.G.1    Farris, J.S.2
  • 24
    • 0009220855 scopus 로고    scopus 로고
    • Origins of horseshoe bats (Rhinolophus, Rhinolophidae) in southern Africa: evidence from allozyme variability
    • Maree S., and Grant W.S. Origins of horseshoe bats (Rhinolophus, Rhinolophidae) in southern Africa: evidence from allozyme variability. J. Mamm. Evol. 4 (1997) 195-214
    • (1997) J. Mamm. Evol. , vol.4 , pp. 195-214
    • Maree, S.1    Grant, W.S.2
  • 25
    • 0034932056 scopus 로고    scopus 로고
    • Molecular insights into the evolution of the family Bovidae: a nuclear DNA perspective
    • Matthee C.A., and Davis S.K. Molecular insights into the evolution of the family Bovidae: a nuclear DNA perspective. Mol. Biol. Evol. 18 (2001) 1220-1230
    • (2001) Mol. Biol. Evol. , vol.18 , pp. 1220-1230
    • Matthee, C.A.1    Davis, S.K.2
  • 26
    • 0035527353 scopus 로고    scopus 로고
    • Mining the mammalian genome for artiodactyls systematics
    • Matthee C.A., Burzlaff J.D., Taylor J.F., and Davis S.K. Mining the mammalian genome for artiodactyls systematics. Syst. Biol. 50 (2001) 367-390
    • (2001) Syst. Biol. , vol.50 , pp. 367-390
    • Matthee, C.A.1    Burzlaff, J.D.2    Taylor, J.F.3    Davis, S.K.4
  • 27
    • 3242703950 scopus 로고    scopus 로고
    • A molecular supermatrix of the rabbits and hares (Leporidae) allows for the identification of five intercontinental exchanges during the Miocene
    • Matthee C.A., Jansen Van Vuuren B., Bell D., and Robinson T.J. A molecular supermatrix of the rabbits and hares (Leporidae) allows for the identification of five intercontinental exchanges during the Miocene. Syst. Biol. 53 (2004) 433-447
    • (2004) Syst. Biol. , vol.53 , pp. 433-447
    • Matthee, C.A.1    Jansen Van Vuuren, B.2    Bell, D.3    Robinson, T.J.4
  • 30
    • 0141637291 scopus 로고    scopus 로고
    • Molecular systematics of dormice (Gliridae, Rodentia) and the African colonization by Graphiurus
    • Montgelard C., Matthee C.A., and Robinson T.J. Molecular systematics of dormice (Gliridae, Rodentia) and the African colonization by Graphiurus. Proc. R. Soc. Lond. B 270 (2003) 1947-1955
    • (2003) Proc. R. Soc. Lond. B , vol.270 , pp. 1947-1955
    • Montgelard, C.1    Matthee, C.A.2    Robinson, T.J.3
  • 31
    • 33746734829 scopus 로고    scopus 로고
    • Phylogenetic relationships of the bulbuls (Aves: Pycnonotidae) based on mitochondrial and nuclear DNA sequence data
    • Moyle R.G., and Marks B.D. Phylogenetic relationships of the bulbuls (Aves: Pycnonotidae) based on mitochondrial and nuclear DNA sequence data. Mol. Phylogenet. Evol. 40 (2006) 687-695
    • (2006) Mol. Phylogenet. Evol. , vol.40 , pp. 687-695
    • Moyle, R.G.1    Marks, B.D.2
  • 32
    • 33847312692 scopus 로고    scopus 로고
    • How should gaps be treated in parsimony? A comparison of approaches using simulation
    • Ogden T.H., and Rosenberg M.S. How should gaps be treated in parsimony? A comparison of approaches using simulation. Mol. Phylogenet. Evol. 42 (2007) 817-826
    • (2007) Mol. Phylogenet. Evol. , vol.42 , pp. 817-826
    • Ogden, T.H.1    Rosenberg, M.S.2
  • 33
    • 27744504087 scopus 로고    scopus 로고
    • Molecular phylogeny of North American long-eared bats (Vespertilionidae: Corynorhinus); inter- and intraspecific relationships inferred from mitochondrial and nuclear DNA sequences
    • Piaggio A.J., and Perkins S.L. Molecular phylogeny of North American long-eared bats (Vespertilionidae: Corynorhinus); inter- and intraspecific relationships inferred from mitochondrial and nuclear DNA sequences. Mol. Phylogenet. Evol. 37 (2005) 762-775
    • (2005) Mol. Phylogenet. Evol. , vol.37 , pp. 762-775
    • Piaggio, A.J.1    Perkins, S.L.2
  • 34
    • 0031773680 scopus 로고    scopus 로고
    • MODELTEST: testing the model of DNA substitution
    • Posada D., and Crandall K.A. MODELTEST: testing the model of DNA substitution. Bioinformatics 14 (1998) 817-818
    • (1998) Bioinformatics , vol.14 , pp. 817-818
    • Posada, D.1    Crandall, K.A.2
  • 35
    • 0005459915 scopus 로고
    • Contribution a L'étude des Chiroptères des terrains tertiaires
    • Revilliod P. Contribution a L'étude des Chiroptères des terrains tertiaires. Mèm. Soc. Paléo, Suisse. Part II 44 (1920)
    • (1920) Mèm. Soc. Paléo, Suisse. Part II , vol.44
    • Revilliod, P.1
  • 36
    • 1542376765 scopus 로고    scopus 로고
    • Congruent mammalian trees from mitochondrial and nuclear genes using Bayesian methods
    • Reyes A., Gissi C., Catzeflis F., Nevo E., Pesole G., and Saccone C. Congruent mammalian trees from mitochondrial and nuclear genes using Bayesian methods. Mol. Biol. Evol. 21 (2004) 397-403
    • (2004) Mol. Biol. Evol. , vol.21 , pp. 397-403
    • Reyes, A.1    Gissi, C.2    Catzeflis, F.3    Nevo, E.4    Pesole, G.5    Saccone, C.6
  • 38
    • 0031476053 scopus 로고    scopus 로고
    • Dispersal-vicariance analysis: a new approach to the quantification of historical biogeography
    • Ronquist F. Dispersal-vicariance analysis: a new approach to the quantification of historical biogeography. Syst. Biol. 46 (1997) 195-203
    • (1997) Syst. Biol. , vol.46 , pp. 195-203
    • Ronquist, F.1
  • 39
    • 0041386108 scopus 로고    scopus 로고
    • MrBayes 3: Bayesian phylogenetic inference under mixed models
    • Ronquist F., and Huelsenbeck J.P. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19 (2003) 1572-1574
    • (2003) Bioinformatics , vol.19 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 41
    • 0005455327 scopus 로고
    • Le gisement du Bretou (Phosphorites du Quercy, Tarn-et-Garonne, France) et sa faune des vertebres de l'Eocene superieur; 4. Insectivores et chiropteres [Le Bretou locality (Quercy Phosphorites, Tarn-et-Garonne, France) and its late Eocene vertebrate fauna; 4. Insectivores and bats]
    • Sigé B. Le gisement du Bretou (Phosphorites du Quercy, Tarn-et-Garonne, France) et sa faune des vertebres de l'Eocene superieur; 4. Insectivores et chiropteres [Le Bretou locality (Quercy Phosphorites, Tarn-et-Garonne, France) and its late Eocene vertebrate fauna; 4. Insectivores and bats]. Palaeontographica A 205 (1988) 69-102
    • (1988) Palaeontographica A , vol.205 , pp. 69-102
    • Sigé, B.1
  • 43
    • 1942487990 scopus 로고    scopus 로고
    • Evolution of ecological diversity in bats
    • Kunz T.H., and Fenton M.B. (Eds), University of Chicago Press
    • Simmons N.B., and Conway T.M. Evolution of ecological diversity in bats. In: Kunz T.H., and Fenton M.B. (Eds). Bat Ecology (2003), University of Chicago Press 493-535
    • (2003) Bat Ecology , pp. 493-535
    • Simmons, N.B.1    Conway, T.M.2
  • 44
    • 0042043052 scopus 로고    scopus 로고
    • Phylogenetic relationships of Icaronycteris, Archaeonyteris, Hassianycteris and Palaeochiropteryx to extant bat lineages, with comments on the evolution of echolocation and foraging strategies in Microchiroptera
    • Simmons N.B., and Geisler J.H. Phylogenetic relationships of Icaronycteris, Archaeonyteris, Hassianycteris and Palaeochiropteryx to extant bat lineages, with comments on the evolution of echolocation and foraging strategies in Microchiroptera. Bull. Am. Mus. Nat. Hist. 235 (1998) 1-182
    • (1998) Bull. Am. Mus. Nat. Hist. , vol.235 , pp. 1-182
    • Simmons, N.B.1    Geisler, J.H.2
  • 45
    • 33947591101 scopus 로고    scopus 로고
    • Molecular phylogeny of New World Myotis (Chiroptera: Vespertilionidae) inferred from mitochondrial and nuclear DNA genes
    • Stadelmann B., Lin L.-K., Kunz T.H., and Ruedi M. Molecular phylogeny of New World Myotis (Chiroptera: Vespertilionidae) inferred from mitochondrial and nuclear DNA genes. Mol. Phylogenet. Evol. 43 (2007) 32-48
    • (2007) Mol. Phylogenet. Evol. , vol.43 , pp. 32-48
    • Stadelmann, B.1    Lin, L.-K.2    Kunz, T.H.3    Ruedi, M.4
  • 48
    • 0141832671 scopus 로고    scopus 로고
    • Nuclear gene sequences confirm ancient link between New Zealand's short-tailed bat and South American noctilionoid bats
    • Teeling E.C., Madsen O., Murphy W.J., Springer M.S., and O'Brien S.J. Nuclear gene sequences confirm ancient link between New Zealand's short-tailed bat and South American noctilionoid bats. Mol. Phylogenet. Evol. 28 (2003) 308-319
    • (2003) Mol. Phylogenet. Evol. , vol.28 , pp. 308-319
    • Teeling, E.C.1    Madsen, O.2    Murphy, W.J.3    Springer, M.S.4    O'Brien, S.J.5
  • 49
    • 12844251802 scopus 로고    scopus 로고
    • A molecular phylogeny for bats illuminates biogeography and the fossil record
    • Teeling E.C., Springer M.S., Madsen O., Bates P., O'Brien S.J., and Murphy W.J. A molecular phylogeny for bats illuminates biogeography and the fossil record. Science 307 (2005) 580-584
    • (2005) Science , vol.307 , pp. 580-584
    • Teeling, E.C.1    Springer, M.S.2    Madsen, O.3    Bates, P.4    O'Brien, S.J.5    Murphy, W.J.6
  • 50
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson J.D., Gibson T.J., Plewniak F., Jeanmougin F., and Higgins D.G. The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25 (1997) 4876-4882
    • (1997) Nucleic Acids Res. , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 51
    • 0036803223 scopus 로고    scopus 로고
    • Divergence time and evolutionary rate estimation with multilocus data
    • Thorne J.L., and Kishino H. Divergence time and evolutionary rate estimation with multilocus data. Syst. Biol. 51 (2002) 689-702
    • (2002) Syst. Biol. , vol.51 , pp. 689-702
    • Thorne, J.L.1    Kishino, H.2
  • 52
    • 0031741182 scopus 로고    scopus 로고
    • Estimating the rate of evolution on the rate of molecular evolution
    • Thorne J.L., Kishino H., and Painter I.S. Estimating the rate of evolution on the rate of molecular evolution. Mol. Biol. Evol. 15 (1998) 1647-1657
    • (1998) Mol. Biol. Evol. , vol.15 , pp. 1647-1657
    • Thorne, J.L.1    Kishino, H.2    Painter, I.S.3
  • 53
    • 5044229689 scopus 로고    scopus 로고
    • Quantitative analyses of biogeography and faunal evolution of middle to late Eocene mammals in East Asia
    • Tsubamoto T., Takai M., and Egi N. Quantitative analyses of biogeography and faunal evolution of middle to late Eocene mammals in East Asia. J. Vertebr. Paleontol. 24 (2004) 657-667
    • (2004) J. Vertebr. Paleontol. , vol.24 , pp. 657-667
    • Tsubamoto, T.1    Takai, M.2    Egi, N.3
  • 54
    • 3543007466 scopus 로고    scopus 로고
    • Phylogenetic relationships among recent Chiropteran families and the importance of choosing appropriate out-group taxa
    • Van Den Bussche R.A., and Hoofer S.R. Phylogenetic relationships among recent Chiropteran families and the importance of choosing appropriate out-group taxa. J. Mamm. 85 (2004) 321-330
    • (2004) J. Mamm. , vol.85 , pp. 321-330
    • Van Den Bussche, R.A.1    Hoofer, S.R.2
  • 55
    • 0000630882 scopus 로고
    • Flight patterns and aerodynamics
    • Wimsat W.A. (Ed), Academic Press, New York
    • Vaughan T.A. Flight patterns and aerodynamics. In: Wimsat W.A. (Ed). Biology of Bats (1970), Academic Press, New York 195-216
    • (1970) Biology of Bats , pp. 195-216
    • Vaughan, T.A.1
  • 56
    • 0034733948 scopus 로고    scopus 로고
    • Fugu: a compact vertebrate reference genome
    • Venkatesh B., Gilligan P., and Breener S. Fugu: a compact vertebrate reference genome. FEBS Lett. 476 (2001) 3-7
    • (2001) FEBS Lett. , vol.476 , pp. 3-7
    • Venkatesh, B.1    Gilligan, P.2    Breener, S.3
  • 57
    • 18144395111 scopus 로고    scopus 로고
    • Utility of nuclear DNA intron markers at lower taxonomic levels: phylogenetic resolution among the nine Tragelaphus spp
    • Willows-Munro S., Robinson T.J., and Matthee C.A. Utility of nuclear DNA intron markers at lower taxonomic levels: phylogenetic resolution among the nine Tragelaphus spp. Mol. Phylogenet. Evol. 35 (2005) 624-636
    • (2005) Mol. Phylogenet. Evol. , vol.35 , pp. 624-636
    • Willows-Munro, S.1    Robinson, T.J.2    Matthee, C.A.3
  • 58
    • 0001583705 scopus 로고
    • Some aspects of plant geography of the Northern Hemisphere during the late Cretaceous and Tertiary
    • Wolfe J.A. Some aspects of plant geography of the Northern Hemisphere during the late Cretaceous and Tertiary. Ann. Mo. Bot. Gard. 62 (1975) 264-279
    • (1975) Ann. Mo. Bot. Gard. , vol.62 , pp. 264-279
    • Wolfe, J.A.1


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