Phylogenetic relationships of the bulbuls (Aves: Pycnonotidae) based on mitochondrial and nuclear DNA sequence data

Molecular Phylogenetics and Evolution

Volumn 40, Issue 3, 2006, Pages 687-695

  Moyle, Robert G ^a   Marks, Ben D ^b  

^a DIVISION OF INVERTEBRATE ZOOLOGY   (United States)

^b LOUISIANA STATE UNIVERSITY   (United States)

Author keywords

Africa; Asia; Bulbul; Pycnonotidae; Systematics

Indexed keywords

MITOCHONDRIAL DNA;

ANIMAL; ARTICLE; COMPARATIVE STUDY; GENETICS; NUCLEOLUS; NUCLEOTIDE SEQUENCE; PHYLOGENY; SONGBIRD;

ANIMALS; BASE SEQUENCE; CELL NUCLEOLUS; DNA, MITOCHONDRIAL; PASSERIFORMES; PHYLOGENY;

AVES; CALYPTOCICHLA; HYPSIPETES; PYCNONOTIDAE; PYCNONOTUS;

EID: 33746734829     PISSN: 10557903     EISSN: 10959513     Source Type: Journal    
DOI: 10.1016/j.ympev.2006.04.015     Document Type: Article

References (36)

1. Barker F.K., Cibois A., Schikler P., Feinstein J., and Cracraft J. Phylogeny and diversification of the largest avian radiation. Proc. Natl. Acad. Sci. USA 101 (2004) 11040-11045
2. Beresford P., Barker F.K., Ryan P.G., and Crowe T.M. African endemics span the tree of songbirds (Passeri): molecular systematics of several evolutionary 'enigmas'. Proc. R. Soc. Lond. B 272 (2005) 849-858
3. Chappuis C., and Erard C. Species limits in the genus Bleda Bonaparte, 1957 (Aves, Pycnonotidae). Z. Zool. Syst. Evol.-Forsch. 31 (1993) 280-299
4. Chesser R.T. Molecular systematics of the rhinocryptid genus Pteroptochos. Condor 101 (1999) 439-446
5. Cibois A., Slikas B., Schulenberg T.S., and Pasquet E. An endemic radiation of Malagasy songbirds is revealed by mitochondrial DNA sequence data. Evolution 55 (2001) 1198-1206
6. Deignan H.G. Family Pycnonotidae (Oriental). In: Mayr E., and Greenway J.C. (Eds). Check-list of Birds of the World (1960), Museum of Comparative Zoology, Cambridge, MA 221-300
7. Delacour J. A revision of the genera and species of the family Pycnonotidae (bulbuls). Zoologica 28 (1943) 17-28
8. In: Dickinson E.C. (Ed). The Howard and Moore Complete Checklist of the Birds of the World. 3rd ed. (2003), Princeton University Press, Princeton, NJ
9. Farris J.S., Kallersjo M., Kluge A.G., and Bult C. Testing significance of incongruence. Cladistics 10 (1994) 315-319
10. Farris J.S., Kallersjo M., Kluge A.G., and Bult C. Constructing a significance test for incongruence. Syst. Biol. 44 (1995) 570-572
11. Felsenstein J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39 (1985) 783-791
12. Fjeldsa, J., Goodman, S.M., Schulenberg, T.S., Slikas, B., 1999. Molecular evidence for relationships of Malagasy birds. In: Adams, N.J. (Ed.), Proceedings of the 22nd International Ornithol. Congress, RH Slotow, Ostrich, Durban.
13. Hackett S.J. Molecular phylogenetics and biogeography of tanagers in the genus Ramphocelus (Aves). Mol. Phylogenet. Evol. 5 (1996) 368-382
14. Hall B.P., and Moreau R.E. An Atlas of Speciation in African Passerine Birds (1970), British Museum (Natural History), London
15. Hillis D.M., Pollock D.D., McGuire J.A., and Zwickl D.J. Is sparse taxon sampling a problem for phylogenetic inference?. Syst. Biol. 52 (2003) 124-126
16. Huelsenbeck J.P., and Ronquist F. MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17 (2001) 754-755
17. Inskipp T., Lindsey N., and Duckworth W. An Annotated Checklist to the Birds of the Oriental Region (1996), Oriental Bird Club, Bedfordshire, UK
18. Johnson K.P., and Sorenson M.D. Comparing molecular evolution in two mitochondrial protein coding genes (cytochrome b and ND2) in the dabbling ducks (Tribe: Anatini). Mol. Phylogenet. Evol. 10 (1998) 82-94
19. Johnson K.P., de Kort S., Dinwoodey K., Mateman A.C., ten Cate C., Lessells C.M., and Clayton D.H. A molecular phylogeny of the dove genera Streptopelia and Columba. Auk 118 (2001) 874-887
20. Marks B.D., Hackett S.J., and Capparella A.P. Historical relationships among neotropical lowland forest areas of endemism as determined by mitochondrial DNA sequence variation within the Wedge-billed Woodcreeper (Aves: Dendrocolaptidae: Glyphorynchus spirurus). Mol. Phylogenet. Evol. 24 (2002) 153-167
21. Moyle R.G. Phylogenetics of barbets (Aves: Piciformes) based on nuclear and mitochondrial DNA sequence data. Mol. Phylogenet. Evol. 30 (2004) 187-200
22. Moyle R.G. Phylogeny and biogeographical history of Trogoniformes, a pantropical bird order. Biol. J. Linn. Soc. 84 (2005) 725-738
23. Olson S.L. Preliminary systematic notes on some Old World passerines. Riv. Ital. Orn. 59 (1989) 183-185
24. Pasquet E., Han L.-X., Khobket O., and Cibois A. Towards a molecular systematics of the genus Criniger, and a preliminary phylogeny of the bulbuls (Aves, Passeriformes, Pycnonotidae). Zoosystema 23 (2001) 857-863
25. Pollock D.D., Zwickl D.J., McGuire J.A., and Hillis D.M. Increased taxon sampling is advantageous for phylogenetic inference. Syst. Biol. 51 (2002) 664-671
26. Posada D., and Crandall K.A. Modeltest: testing the model of DNA substitution. Bioinformatics 14 (1998) 817-818
27. Prather A.L., Monfils A.K., Posto A.L., and Williams R.A. Monophyly and Phylogeny of Monarda (Lamiaceae): evidence from the internal transcribed spacer (ITS) region of nuclear ribosomal DNA. Syst. Bot. 27 (2002) 127-137
28. Prychitko T.M., and Moore W.S. The utility of DNA sequences of an intron from the beta-fibrinogen gene in phylogenetic analysis of woodpeckers (Aves: Picidae). Mol. Phylogenet. Evol. 8 (1997) 193-204
29. Roy M.S. Recent diversification in African greenbuls (Pycnonotidae: Andropadus) supports a montane speciation model. Proc. R. Soc. Lond. B 264 (1997) 1337-1344
30. Sheldon F.H., Whittingham L.A., Moyle R.G., Slikas B., and Winkler D.W. Phylogeny of swallows (Aves: Hirundinidae) estimated from nuclear and mitochondrial DNA sequences. Mol. Phylogenet. Evol. 35 (2005) 254-270
31. Sibley C.G., and Ahlquist J.E. Phylogeny and Classification of Birds (1990), Yale University, New Haven, CT
32. Smith T.B., Wayne R.K., Girman D.J., and Bruford M.W. A role for ecotones in generating rainforest biodiversity. Science 276 (1997) 1855-1857
33. Smith T.B., Calsbeek R., Wayne R.K., Holder K.H., and Pires D. Testing alternative mechanisms of evolutionary divergence in an African rain forest passerine bird. J. Evol. Biol. 18 (2005) 257-268
34. Swofford, D.L., 2002. PAUP*: Phylogenetic Analysis Using Parsimony (*and other methods). Sinauer Associates, Sunderland, MA.
35. Yang Z.H. Maximum-likelihood phylogenetic estimation from DNA-sequences with variable rates over sites-approximate methods. J. Mol. Evol. 39 (1994) 306-314
36. Yang Z.H. Estimating the pattern of nucleotide substitution. J. Mol. Evol. 39 (1994) 105-111