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Volumn 43, Issue 3, 2007, Pages 999-1004

Why weight?

Author keywords

Codon weighting; Pseudoreplicate reweighting; Successive weighting; Transversion weighting; Weighted parsimony

Indexed keywords

MITOCHONDRIAL DNA;

EID: 34248634586     PISSN: 10557903     EISSN: 10959513     Source Type: Journal    
DOI: 10.1016/j.ympev.2007.02.028     Document Type: Article
Times cited : (16)

References (26)
  • 1
    • 0030308089 scopus 로고    scopus 로고
    • On combining protein sequences and nucleic acid sequences in phylogenetic analysis: the homeobox protein case
    • Agosti D., Jacobs D., and DeSalle R. On combining protein sequences and nucleic acid sequences in phylogenetic analysis: the homeobox protein case. Cladistics 12 (1996) 65-82
    • (1996) Cladistics , vol.12 , pp. 65-82
    • Agosti, D.1    Jacobs, D.2    DeSalle, R.3
  • 2
    • 0034351389 scopus 로고    scopus 로고
    • Quantification of homoplasy for nucleotide transitions and transversions and a reexamination of assumptions in weighted phylogenetic analyses
    • Broughton R.E., Stanley S.E., and Durrett R.T. Quantification of homoplasy for nucleotide transitions and transversions and a reexamination of assumptions in weighted phylogenetic analyses. Syst. Biol. 49 (2000) 617-627
    • (2000) Syst. Biol. , vol.49 , pp. 617-627
    • Broughton, R.E.1    Stanley, S.E.2    Durrett, R.T.3
  • 3
    • 12044258419 scopus 로고
    • Weighting, partitioning, and combining characters in phylogenetic analysis
    • Chippindale P.T., and Wiens J.J. Weighting, partitioning, and combining characters in phylogenetic analysis. Syst. Biol. 43 (1994) 278-287
    • (1994) Syst. Biol. , vol.43 , pp. 278-287
    • Chippindale, P.T.1    Wiens, J.J.2
  • 4
    • 0031224810 scopus 로고    scopus 로고
    • Is congruence between data partitions a reliable predictor of phylogenetic accuracy?
    • Cunningham C.W. Is congruence between data partitions a reliable predictor of phylogenetic accuracy?. Syst. Biol. 46 (1997) 464-478
    • (1997) Syst. Biol. , vol.46 , pp. 464-478
    • Cunningham, C.W.1
  • 5
    • 0023478742 scopus 로고
    • Tempo and mode of sequence evolution in mitochondrial DNA of Hawaiian Drosophila
    • DeSalle R., Freedman T., Prager E.M., and Wilson A.C. Tempo and mode of sequence evolution in mitochondrial DNA of Hawaiian Drosophila. J. Mol. Evol. 26 (1987) 157-164
    • (1987) J. Mol. Evol. , vol.26 , pp. 157-164
    • DeSalle, R.1    Freedman, T.2    Prager, E.M.3    Wilson, A.C.4
  • 6
    • 0032563251 scopus 로고    scopus 로고
    • "Inordinate fondness" explained: why are there so many beetles?
    • Farrell B.D. "Inordinate fondness" explained: why are there so many beetles?. Science 281 (1998) 553-557
    • (1998) Science , vol.281 , pp. 553-557
    • Farrell, B.D.1
  • 7
    • 84963028421 scopus 로고
    • A successive approximations approach to character weighting
    • Farris J.S. A successive approximations approach to character weighting. Syst. Zool. 18 (1969) 374-385
    • (1969) Syst. Zool. , vol.18 , pp. 374-385
    • Farris, J.S.1
  • 8
    • 0001306645 scopus 로고
    • A likelihood approach to character weighting and what it tells us about parsimony and compatibility
    • Felsenstein J. A likelihood approach to character weighting and what it tells us about parsimony and compatibility. Biol. J. Linn. Soc. 16 (1981) 183-196
    • (1981) Biol. J. Linn. Soc. , vol.16 , pp. 183-196
    • Felsenstein, J.1
  • 9
    • 0002212559 scopus 로고
    • Weighted parsimony; Does it work?
    • Miyamoto M.M., and Craycraft J. (Eds), Oxford University Press, New York
    • Fitch W.M., and Ye J. Weighted parsimony; Does it work?. In: Miyamoto M.M., and Craycraft J. (Eds). Phylogenetic Analysis of DNA Sequences (1991), Oxford University Press, New York 147-154
    • (1991) Phylogenetic Analysis of DNA Sequences , pp. 147-154
    • Fitch, W.M.1    Ye, J.2
  • 10
    • 0034351396 scopus 로고    scopus 로고
    • Multiple data sets, congruence, and hypothesis testing for the phylogeny of the basal groups of the lizard genus Sceloporus (squamata, phrynosomatidae)
    • Flores-Villela O., Kjer K.M., Benabib M., and Sites Jr. J.W. Multiple data sets, congruence, and hypothesis testing for the phylogeny of the basal groups of the lizard genus Sceloporus (squamata, phrynosomatidae). Syst. Biol. 49 (2000) 713-739
    • (2000) Syst. Biol. , vol.49 , pp. 713-739
    • Flores-Villela, O.1    Kjer, K.M.2    Benabib, M.3    Sites Jr., J.W.4
  • 11
    • 0029068893 scopus 로고
    • Maximum likelihood estimation of the heterogeneity of substitution rate among nucleotide sites
    • Gu X., Fu Y.-X., and Li W.-H. Maximum likelihood estimation of the heterogeneity of substitution rate among nucleotide sites. Mol. Biol. Evol. 12 (1995) 546-557
    • (1995) Mol. Biol. Evol. , vol.12 , pp. 546-557
    • Gu, X.1    Fu, Y.-X.2    Li, W.-H.3
  • 12
    • 34248670867 scopus 로고    scopus 로고
    • Goloboff, P., Farris, S., Nixon, K. 2003. TNT (Tree analysis using New Technology) ver. 1.1 Published by the authors, Tucumán, Argentina.
  • 13
    • 0005705790 scopus 로고
    • Estimating character weights during tree search
    • Goloboff P. Estimating character weights during tree search. Cladistics 9 (1993) 83-91
    • (1993) Cladistics , vol.9 , pp. 83-91
    • Goloboff, P.1
  • 14
    • 0028362880 scopus 로고
    • Application and accuracy of molecular phylogenies
    • Hillis D.M., Huelsenbeck J.P., and Cunningham C.W. Application and accuracy of molecular phylogenies. Science 264 (1994) 671-677
    • (1994) Science , vol.264 , pp. 671-677
    • Hillis, D.M.1    Huelsenbeck, J.P.2    Cunningham, C.W.3
  • 15
    • 0025764044 scopus 로고
    • Evolution of the cytochrome b gene in mammals
    • Irwin D.M., Kocher T.D., and Wilson A.C. Evolution of the cytochrome b gene in mammals. J. Mol. Evol. 32 (1991) 128-144
    • (1991) J. Mol. Evol. , vol.32 , pp. 128-144
    • Irwin, D.M.1    Kocher, T.D.2    Wilson, A.C.3
  • 16
    • 33846906954 scopus 로고    scopus 로고
    • Site specific rates of mitochondrial genomes and the phylogeny of eutheria
    • Kjer K.M., and Honeycutt R.L. Site specific rates of mitochondrial genomes and the phylogeny of eutheria. BMC Evol. Biol. 7 (2007) 8
    • (2007) BMC Evol. Biol. , vol.7 , pp. 8
    • Kjer, K.M.1    Honeycutt, R.L.2
  • 17
    • 0035527388 scopus 로고    scopus 로고
    • Phylogeny of trichoptera (Caddisflies): characterization of signal and noise within multiple datasets
    • Kjer K.M., Blahnik R.J., and Holzenthal R.W. Phylogeny of trichoptera (Caddisflies): characterization of signal and noise within multiple datasets. Syst. Biol. 50 (2001) 781-816
    • (2001) Syst. Biol. , vol.50 , pp. 781-816
    • Kjer, K.M.1    Blahnik, R.J.2    Holzenthal, R.W.3
  • 18
  • 19
    • 0021277009 scopus 로고
    • A new method for calculating evolutionary substitution rates
    • Lanave C., Preparata G., Saccone C., and Serio G. A new method for calculating evolutionary substitution rates. J. Mol. Evol. 20 (1984) 86-93
    • (1984) J. Mol. Evol. , vol.20 , pp. 86-93
    • Lanave, C.1    Preparata, G.2    Saccone, C.3    Serio, G.4
  • 20
    • 0035527396 scopus 로고    scopus 로고
    • A likelihood approach to estimating phylogeny from discreet morphological character data
    • Lewis P.O. A likelihood approach to estimating phylogeny from discreet morphological character data. Syst. Biol. 50 (2001) 913-925
    • (2001) Syst. Biol. , vol.50 , pp. 913-925
    • Lewis, P.O.1
  • 21
    • 0019424782 scopus 로고
    • Comparison of phylogenetic trees
    • Robinson D.F., and Foulds L.R. Comparison of phylogenetic trees. Math. Biosci. 53 (1981) 131-147
    • (1981) Math. Biosci. , vol.53 , pp. 131-147
    • Robinson, D.F.1    Foulds, L.R.2
  • 22
    • 0028251187 scopus 로고
    • Evolution, weighting, and phylogenetic utility of mitochondrial gene sequences and a compilation of conserved polymerase chain reaction primers
    • Simon C., Frati F., Beckenbach A., Crespi B., Liu H., and Flook P. Evolution, weighting, and phylogenetic utility of mitochondrial gene sequences and a compilation of conserved polymerase chain reaction primers. Ann. Entomol. Soc. Am. 87 (1994) 651-701
    • (1994) Ann. Entomol. Soc. Am. , vol.87 , pp. 651-701
    • Simon, C.1    Frati, F.2    Beckenbach, A.3    Crespi, B.4    Liu, H.5    Flook, P.6
  • 23
    • 34248640153 scopus 로고    scopus 로고
    • *, version 4.0b10. Sinauer, Sunderland, Massachusetts.
  • 25
    • 0028214103 scopus 로고
    • Estimating the pattern of nucleotide substitution
    • Yang Z. Estimating the pattern of nucleotide substitution. J. Mol. Evol. 39 (1994) 105-111
    • (1994) J. Mol. Evol. , vol.39 , pp. 105-111
    • Yang, Z.1
  • 26
    • 0029469716 scopus 로고
    • Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods
    • Yang Z. Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods. Syst. Biol. 44 (1994) 384-399
    • (1994) Syst. Biol. , vol.44 , pp. 384-399
    • Yang, Z.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.