Optimized sample preparation for two-dimensional gel electrophoresis of soluble proteins from chicken bursa of Fabricius

Proteome Science

Volumn 7, Issue , 2009, Pages 38-

  Wu, Yongping ^a,b   Zhou, Jiyong ^a,b   Zhang, Xin ^a,b   Zheng, Xiaojuan ^a,b   Jiang, Xuetao ^a,b   Shi, Lixue ^a,b   Yin, Wei ^a,b   Wang, Junhua ^a,b  

^a ZHEJIANG UNIVERSITY   (China)

^b ZHEJIANG UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

3 [(3 CHOLAMIDOPROPYL)DIMETHYLAMMONIO] 1 PROPANESULFONIC ACID; BENZYLSULFONYL FLUORIDE; BUFFER; DEOXYRIBONUCLEASE I; DITHIOTHREITOL; RIBONUCLEASE A;

ANIMAL EXPERIMENT; ANIMAL TISSUE; ARTICLE; BURSA FABRICII; CHICKEN; CONTROLLED STUDY; ISOELECTRIC FOCUSING; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; NONHUMAN; PROTEIN EXPRESSION; PROTEOMICS; SPLEEN; THYMUS; TWO DIMENSIONAL GEL ELECTROPHORESIS;

AVES; AVIBIRNAVIRUS; GALLUS GALLUS;

EID: 70450227342     PISSN: None     EISSN: 14775956     Source Type: Journal    
DOI: 10.1186/1477-5956-7-38     Document Type: Article

References (42)

1. Liu H, Hicks JA. Using proteomics to understand avian systems biology and infectious disease. Poultry science 2007, 86:1523-1529. 10.3382/ps.2007-00079, 17575203.
2. Doherty MK, McLean L, Hayter JR, Pratt JM, Robertson DH, El-Shafei A, Gaskell SJ, Beynon RJ. The proteome of chicken skeletal muscle: changes in soluble protein expression during growth in a layer strain. Proteomics 2004, 4:2082-2093. 10.1002/pmic.200300716, 15221769.
3. Kuo YM, Shiue YL, Chen CF, Tang PC, Lee YP. Proteomic analysis of hypothalamic proteins of high and low egg production strains of chickens. Theriogenology 2005, 64:1490-1502. 10.1016/j.theriogenology.2005.03.020, 16182870.
4. Mangum JE, Farlie PG, Hubbard MJ. Proteomic profiling of facial development in chick embryos. Proteomics 2005, 5:2542-2550. 10.1002/pmic.200401207, 15912509.
5. Agudo D, Gomez-Esquer F, Diaz-Gil G, Martinez-Arribas F, Delcan J, Schneider J, Palomar MA, Linares R. Proteomic analysis of the Gallus gallus embryo at stage-29 of development. Proteomics 2005, 5:4946-4957. 10.1002/pmic.200402056, 16287166.
6. Han BK, Kim JN, Shin JH, Kim JK, Jo DH, Kim H, Han JY. Proteome analysis of chicken embryonic gonads: identification of major proteins from cultured gonadal primordial germ cells. Mol Reprod Dev 2005, 72:521-529. 10.1002/mrd.20374, 16161032.
7. Parada C, Gato A, Bueno D. Mammalian embryonic cerebrospinal fluid proteome has greater apolipoprotein and enzyme pattern complexity than the avian proteome. J Proteome Res 2005, 4:2420-2428. 10.1021/pr050213t, 16335996.
8. Lam TC, Li KK, Lo SC, Guggenheim JA, To CH. A chick retinal proteome database and differential retinal protein expressions during early ocular development. J Proteome Res 2006, 5:771-784. 10.1021/pr050280n, 16602683.
9. Lam TC, Li KK, Lo SCL, Guggenheim JA, To CH. Application of Fluorescence Difference Gel ElectrophoresisTechnology in Searching for Protein Biomarkers in Chick Myopia. J Proteome Res 2007, 6:4135-4149. 10.1021/pr0701097, 17924678.
10. Huang SY, Lin JH, Chen YH, Chuang CK, Chiu YF, Chen MY, Chen HH, Lee WC. Analysis of chicken serum proteome and differential protein expression during development in single-comb White Leghorn hens. Proteomics 2006, 6:2217-2224. 10.1002/pmic.200500410, 16475231.
11. Glick B. Historical perspective: the bursa of Fabricius and its influence on B-cell development, past and present. Vet Immunol Immunopathol 1991, 30:3-12. 10.1016/0165-2427(91)90003-U, 1781155.
12. Masteller EL, Pharr GT, Funk PE, Thompson CB. Avian B cell development. Int Rev Immunol 1997, 15:185-206.
13. Ratcliffe MJ. B cell development in gut associated lymphoid tissues. Vet Immunol Immunopathol 2002, 87:337-340. 10.1016/S0165-2427(02)00061-2, 12072255.
14. Cortes A, Fonfria J, Vicente A, Varas A, Moreno J, Zapata AG. T-dependent areas in the chicken bursa of Fabricius: an immunohistological study. Anat Rec 1995, 242:91-95. 10.1002/ar.1092420112, 7604986.
15. Fonfria J, Moreno J, Gomez del Moral M, Alonso L, Zapata AG. The diffusely-infiltrated lymphoid tissue of the bursa of Fabricius of Sturnus unicolor. Histological organization and functional significance. Histol Histopathol 1994, 9:333-338.
16. Glick B, Chang TS, Jaap RG. The bursa of Fabricius and antibody production in the domestic fowl. Poultry Sci 1956, 35:224-225.
17. Davison TF. The immunologists' debt to the chicken. Br Poult Sci 2003, 44:6-21. 10.1080/0007166031000085364, 12737220.
18. Neiman PE, Ruddell A, Jasoni C, Loring G, Thomas SJ, Brandvold KA, Lee R, Burnside J, Delrow J. Analysis of gene expression during myc oncogene-induced lymphomagenesis in the bursa of Fabricius. Proc Natl Acad Sci USA 2001, 98:6378-6383. 10.1073/pnas.111144898, 33476, 11353853.
19. McCarthy FM, Cooksey AM, Wang N, Bridges SM, Pharr GT, Burgess SC. Modeling a whole organ using proteomics: the avian bursa of Fabricius. Proteomics 2006, 6:2759-2771. 10.1002/pmic.200500648, 16596704.
20. Gorg A, Weiss W, Dunn MJ. Current two-dimensional electrophoresis technology for proteomics. Proteomics 2004, 4:3665-3685. 10.1002/pmic.200401031, 15543535.
21. Saravanan RS, Rose JK. A critical evaluation of sample extraction techniques for enhanced proteomic analysis of recalcitrant plant tissues. Proteomics 2004, 4:2522-2532. 10.1002/pmic.200300789, 15352226.
22. Luche S, Santoni V, Rabilloud T. Evaluation of nonionic and zwitterionic detergents as membrane protein solubilizers in two-dimensional electrophoresis. Proteomics 2003, 3:249-253. 10.1002/pmic.200390037, 12627377.
23. Tastet C, Charmont S, Chevallet M, Luche S, Rabilloud T. Structure-efficiency relationships of zwitterionic detergents as protein solubilizers in two-dimensional electrophoresis. Proteomics 2003, 3:111-121. 10.1002/pmic.200390019, 12601803.
24. Stanley BA, Neverova I, Brown HA, Van Eyk JE. Optimizing protein solubility for two-dimensional gel electrophoresis analysis of human myocardium. Proteomics 2003, 3:815-820. 10.1002/pmic.200300388, 12833503.
25. Churchward MA, Butt RH, Lang JC, Hsu KK, Coorssen JR. Enhanced detergent extraction for analysis of membrane proteomes by two-dimensional gel electrophoresis. Proteome Sci 2005, 3:5. 10.1186/1477-5956-3-5, 1184097, 15941475.
26. Herbert BR, Molloy MP, Gooley AA, Walsh BJ, Bryson WG, Williams KL. Improved protein solubility in two-dimensional electrophoresis using tributyl phosphine as reducing agent. Electrophoresis 1998, 19:845-851. 10.1002/elps.1150190540, 9629925.
27. Olsson I, Larsson K, Palmgren R, Bjellqvist B. Organic disulfides as a means to generate streak-free two-dimensional maps with narrow range basic immobilized pH gradient strips as first dimension. Proteomics 2002, 2:1630-1632. 10.1002/1615-9861(200211)2:11<1630::AID-PROT1630>3.0.CO;2-N, 12442261.
28. Herbert B, Galvani M, Hamdan M, Olivieri E, MacCarthy J, Pedersen S, Righetti PG. Reduction and alkylation of proteins in preparation of two-dimensional map analysis: why, when, and how?. Electrophoresis 2001, 22:2046-2057. 10.1002/1522-2683(200106)22:10<2046::AID-ELPS2046>3.0.CO;2-C, 11465505.
29. Wang SB, Hu Q, Sommerfeld M, Chen F. An optimized protocol for isolation of soluble proteins from microalgae fortwo-dimensional gel electrophoresis analysis. J Appl Phycol 2003, 15:485-496.
30. Wu FS, Wang MY. Extraction of proteins for sodium dodecyl sulfate-polyacrylamide gel electrophoresis from protease-rich plant tissues. Anal Biochem 1984, 139:100-103. 10.1016/0003-2697(84)90394-4, 6377964.
31. Nandakumar MP, Shen J, Raman B, Marten MR. Solubilization of trichloroacetic acid (TCA) precipitated microbial proteins via naOH for two-dimensional electrophoresis. J Proteome Res 2003, 2:89-93. 10.1021/pr025541x, 12643547.
32. Molloy MP. Two-dimensional electrophoresis of membrane proteins using immobilized pH gradients. Anal Biochem 2000, 280:1-10. 10.1006/abio.2000.4514, 10805514.
33. O'Farrell PH. High resolution two-dimensional electrophoresis of proteins. J Biol Chem 1975, 250:4007-4021.
34. Gorg A, Obermaier C, Boguth G, Harder A, Scheibe B, Wildgruber R, Weiss W. The current state of two-dimensional electrophoresis with immobilized pH gradients. Electrophoresis 2000, 21:1037-1053. 10.1002/(SICI)1522-2683(20000401)21:6<1037::AID-ELPS1037>3.0.CO;2-V, 10786879.
35. Rabilloud T, Adessi C, Giraudel A, Lunardi J. Improvement of the solubilization of proteins in two-dimensional electrophoresis with immobilized pH gradients. Electrophoresis 1997, 18:307-316. 10.1002/elps.1150180303, 9150907.
36. Galvani M, Rovatti L, Hamdan M, Herbert B, Righetti PG. Protein alkylation in the presence/absence of thiourea in proteome analysis: a matrix assisted laser desorption/ionization-time of flight-mass spectrometry investigation. Electrophoresis 2001, 22:2066-2074. 10.1002/1522-2683(200106)22:10<2066::AID-ELPS2066>3.0.CO;2-8, 11465507.
37. Herbert B. Advances in protein solubilisation for two-dimensional electrophoresis. Electrophoresis 1999, 20:660-663. 10.1002/(SICI)1522-2683(19990101)20:4/5<660::AID-ELPS660>3.0.CO;2-Q, 10344231.
38. Gorg A, Obermaier C, Boguth G, Weiss W. Recent developments in two-dimensional gel electrophoresis with immobilized pH gradients: wide pH gradients up to pH 12, longer separation distances and simplified procedures. Electrophoresis 1999, 20:712-717. 10.1002/(SICI)1522-2683(19990101)20:4/5<712::AID-ELPS712>3.0.CO;2-Y, 10344237.
39. Zheng XJ, Hong LL, Shi LX, Guo JQ, Sun Z, Zhou JY. Proteomics analysis of host cells infected with infectious bursal disease virus. Mol Cell Proteomics 2008, 7:612-625.
40. Zhou JY, Ye JX, Ye WC, Chen QX, Zheng XJ, Guo JQ. Antigenic and molecular characterization of infectious bursal disease virus in China from layer chicken flocks. Prog Biochem Biophys 2005, 32:37-45.
41. Bradford MM. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem 1976, 72:248-254. 10.1016/0003-2697(76)90527-3, 942051.
42. Yan JX, Wait R, Berkelman T, Harry RA, Westbrook JA, Wheeler CH, Dunn MJ. A modified silver staining protocol for visualization of proteins compatible with matrix-assisted laser desorption/ionization and electrospray ionization-mass spectrometry. Electrophoresis 2000, 21:3666-3672. 10.1002/1522-2683(200011)21:17<3666::AID-ELPS3666>3.0.CO;2-6, 11271485.