-
1
-
-
46449109015
-
Structure and energetics of the hydrogen-bonded backbone in protein folding
-
Bolen DW, Rose GD. Structure and energetics of the hydrogen-bonded backbone in protein folding. Annu Rev Biochem 2008;77:339-362.
-
(2008)
Annu Rev Biochem
, vol.77
, pp. 339-362
-
-
Bolen, D.W.1
Rose, G.D.2
-
3
-
-
0034846953
-
Functional and structural roles of constituent amino acid residues of bovine pancreatic ribonuclease a
-
DOI 10.1263/jbb.92.98
-
Chatani E, Hayashi R. Functional and structural roles of constituent amino acid residues of bovine pancreatic ribonuclease A. J Biosci Bioeng 2001;92:98-107. (Pubitemid 32846406)
-
(2001)
Journal of Bioscience and Bioengineering
, vol.92
, Issue.2
, pp. 98-107
-
-
Chatani, E.1
Hayashi, R.2
-
5
-
-
47749083052
-
From the first protein structures to our current knowledge of protein folding: Delights and scepticisms
-
Fersht AR. From the first protein structures to our current knowledge of protein folding: delights and scepticisms. Nat Rev Mol Cell Biol 2008;9:650-654.
-
(2008)
Nat Rev Mol Cell Biol
, vol.9
, pp. 650-654
-
-
Fersht, A.R.1
-
6
-
-
9744226460
-
A twisted base? the role of arginine in enzyme-catalyzed proton abstractions
-
DOI 10.1016/j.abb.2004.09.018, PII S0003986104005326
-
Guillen Schlippe YV, Hedstrom L. A twisted base? The role of arginine in enzyme-catalyzed proton abstractions. Arch Biochem Biophys 2005;433:266-278. (Pubitemid 39586597)
-
(2005)
Archives of Biochemistry and Biophysics
, vol.433
, Issue.1
, pp. 266-278
-
-
Guillen Schlippe, Y.V.1
Hedstrom, L.2
-
7
-
-
47549096255
-
Modulation of allostery of pyruvate kinase by shifting of an ensemble of microstates
-
Lee JC. Modulation of allostery of pyruvate kinase by shifting of an ensemble of microstates. Acta Biochim Biophys Sinica 2008;40:663-669.
-
(2008)
Acta Biochim Biophys Sinica
, vol.40
, pp. 663-669
-
-
Lee, J.C.1
-
8
-
-
0036384350
-
One fold with many functions: The evolutionary relationships between TIM barrel families based on their sequences, structures and functions
-
Nagano N, Orengo CA, Thornton JM. One fold with many functions: the evolutionary relationships between TIM barrel families based on their sequences, structures and functions. J Mol Biol 2002;321:741-765.
-
(2002)
J Mol Biol
, vol.321
, pp. 741-765
-
-
Nagano, N.1
Orengo, C.A.2
Thornton, J.M.3
-
9
-
-
15444362906
-
Local conformational fluctuations can modulate the coupling between proton binding and global structural transitions in proteins
-
Whitten ST, Garcia-Moreno EB, Hilser VJ. Local conformational fluctuations can modulate the coupling between proton binding and global structural transitions in proteins. Proc Natl Acad Sci USA 2005;102:4282-4287.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 4282-4287
-
-
Whitten, S.T.1
Garcia-Moreno, E.B.2
Hilser, V.J.3
-
10
-
-
4644355496
-
Analysis of protein folding and function using backbone modified proteins
-
DOI 10.1016/j.bioorg.2004.06.011, PII S0045206804000549, Mechanic Enzymology
-
Yang XY, Wang M, Fitzgerald MC. Analysis of protein folding and function using backbone modified proteins. Bioorg Chem 2004;32:438-449. (Pubitemid 39277445)
-
(2004)
Bioorganic Chemistry
, vol.32
, Issue.5
, pp. 438-449
-
-
Yang, X.1
Wang, M.2
Fitzgerald, M.C.3
-
11
-
-
0025685315
-
Retinoic Acid receptors and cellular retinoid binding-proteins.I. A systematic study of their differential pattern of transcription during mouse organogenesis
-
Dolle P, Ruberte E, Leroy P, Morrisskay G, Chambon P. Retinoic Acid receptors and cellular retinoid binding-proteins.I. A systematic study of their differential pattern of transcription during mouse organogenesis. Development 1990;110:1133-1151.
-
(1990)
Development
, vol.110
, pp. 1133-1151
-
-
Dolle, P.1
Ruberte, E.2
Leroy, P.3
Morrisskay, G.4
Chambon, P.5
-
12
-
-
0031715324
-
Nuclear detection of cellular retinoic acid binding proteins I and II with new antibodies
-
Gaub MP, Lutz Y, Ghyselinck NB, Scheuer I, Pfister V, Chambon P, Rochette-Egly C. Nuclear detection of cellular retinoic acid binding proteins I and II with new antibodies. J Histochem Cytochem 1998;46:1103-1111. (Pubitemid 28445284)
-
(1998)
Journal of Histochemistry and Cytochemistry
, vol.46
, Issue.10
, pp. 1103-1111
-
-
Gaub, M.-P.1
Lutz, Y.2
Ghyselinck, N.B.3
Scheuer, I.4
Pfister, V.5
Chambon, P.6
Rochette-Egly, C.7
-
13
-
-
0029839230
-
Retinoic acid biosynthesis and metabolism
-
Napoli JL. Retinoic acid biosynthesis and metabolism. FASEB J 1996;10:993-1001.
-
(1996)
FASEB J
, vol.10
, pp. 993-1001
-
-
Napoli, J.L.1
-
14
-
-
0032831815
-
Interactions of retinoid binding proteins and enzymes in retinoid metabolism
-
DOI 10.1016/S1388-1981(99)00117-1, PII S1388198199001171
-
Napoli JL. Interactions of retinoid binding proteins and enzymes in retinoid metabolism. Biochim Biophys Acta 1999;1440:139-162. (Pubitemid 29424180)
-
(1999)
Biochimica et Biophysica Acta - Molecular and Cell Biology of Lipids
, vol.1440
, Issue.2-3
, pp. 139-162
-
-
Napoli, J.L.1
-
15
-
-
0003035905
-
Cellular retinoid binding proteins
-
Sporn MB, Roberts AB, DeWitt S, Goodman DS, editors. 2nd edition. New York: Raven Press
-
Ong DE, Newcomer ME, Chytil F. Cellular retinoid binding proteins. In: Sporn MB, Roberts AB, DeWitt S, Goodman DS, editors. The retinoids: Biology, Chemistry and Medicine, 2nd edition. New York: Raven Press; 1994. pp 283-318.
-
(1994)
The Retinoids: Biology, Chemistry and Medicine
, pp. 283-318
-
-
Ong, D.E.1
Newcomer, M.E.2
Chytil, F.3
-
16
-
-
0028774713
-
Crystal structures of cellular retinoic acid binding proteins I and II in complex with all-trans-retinoic acid and a synthetic retinoid
-
Kleywegt GJ, Bergfors T, Senn H, Lemotte P, Gsell B, Shudo K, Jones TA. Crystal-structures of cellular retinoic acid-binding protein-I and protein-II in complex with all-trans-retinoic acid and a synthetic retinoid. Structure 1994;2:1241-1258. (Pubitemid 124001322)
-
(1994)
Structure
, vol.2
, Issue.12
, pp. 1241-1258
-
-
Kleywegt, G.J.1
Bergfors, T.2
Senn, H.3
Le Motte, P.4
Gsell, B.5
Shudo, K.6
Jones, T.A.7
-
17
-
-
33749258949
-
The Structure of Apo-wild-type Cellular Retinoic Acid Binding Protein II at 1.4 A and its Relationship to Ligand Binding and Nuclear Translocation
-
DOI 10.1016/j.jmb.2006.08.059, PII S0022283606011120
-
Vaezeslami S, Mathes E, Vasileiou C, Borhan B, Geiger JH. The structure of apo-wild-type cellular retinoic acid binding protein II at 1.4 A and its relationship to ligand binding and nuclear translocation. J Mol Biol 2006;363:687-701. (Pubitemid 44486222)
-
(2006)
Journal of Molecular Biology
, vol.363
, Issue.3
, pp. 687-701
-
-
Vaezeslami, S.1
Mathes, E.2
Vasileiou, C.3
Borhan, B.4
Geiger, J.H.5
-
18
-
-
0031036744
-
Structure-function relationships of cellular retinoic acid-binding proteins: Quantitative analysis of the ligand binding properties of the wild- Type proteins and site-directed mutants
-
DOI 10.1074/jbc.272.3.1541
-
Wang LC, Li Y, Yan HG. Structure-function relationships of cellular retinoic acid-binding proteins - quantitative analysis of the ligand binding properties of the wild-type proteins and site-directed mutants. J Biol Chem 1997;272:1541-1547. (Pubitemid 27043233)
-
(1997)
Journal of Biological Chemistry
, vol.272
, Issue.3
, pp. 1541-1547
-
-
Wang, L.1
Li, Y.2
Yan, H.3
-
19
-
-
56649123412
-
Structural analysis of site-directed mutants of cellular retinoic acid binding protein ii addresses the relationship between structural integrity and ligand binding
-
Vaezeslami S, Jia X, Vasileiou C, Borhan B, Geiger JH. structural analysis of site-directed mutants of cellular retinoic acid binding protein ii addresses the relationship between structural integrity and ligand binding. Acta Crystallogr Sect D 2008;64:1228-1239.
-
(2008)
Acta Crystallogr Sect D
, vol.64
, pp. 1228-1239
-
-
Vaezeslami, S.1
Jia, X.2
Vasileiou, C.3
Borhan, B.4
Geiger, J.H.5
-
20
-
-
67650242489
-
Dissection of the critical binding determinants of cellular retinoic acid binding protein II by mutagenesis and fluorescence binding assay
-
Vasileiou C, Lee KSS, Crist RM, Vaezeslami S, Goins SM, Geiger JH, Borhan B. Dissection of the critical binding determinants of cellular retinoic acid binding protein II by mutagenesis and fluorescence binding assay. Proteins: Structure, Function and Bioinformatics 2009;76:281-290.
-
(2009)
Proteins: Structure, Function and Bioinformatics
, vol.76
, pp. 281-290
-
-
Vasileiou, C.1
Lee, K.S.S.2
Crist, R.M.3
Vaezeslami, S.4
Goins, S.M.5
Geiger, J.H.6
Borhan, B.7
-
21
-
-
34249040518
-
Protein design: Reengineering Cellular Retinoic Acid Binding Protein II into a rhodopsin protein mimic
-
DOI 10.1021/ja067546r
-
Vasileiou C, Vaezeslami S, Crist RM, Rabago-Smith M, Geiger JH, Borhan B. Protein design: re-engineering cellular retinoic acid binding protein II into a rhodopsin protein mimic. J Am Chem Soc 2007;129:6140-6148. (Pubitemid 46786805)
-
(2007)
Journal of the American Chemical Society
, vol.129
, Issue.19
, pp. 6140-6148
-
-
Vasileiou, C.1
Vaezeslami, S.2
Crist, R.M.3
Rabago-Smith, M.4
Geiger, J.H.5
Borhan, B.6
-
22
-
-
33646041325
-
Engineering a rhodopsin protein mimic
-
Crist RM, Vasileiou C, Rabago-Smith M, Geiger JH, Borhan B. Engineering a rhodopsin protein mimic. J Am Chem Soc 2006;128:4522-4523.
-
(2006)
J Am Chem Soc
, vol.128
, pp. 4522-4523
-
-
Crist, R.M.1
Vasileiou, C.2
Rabago-Smith, M.3
Geiger, J.H.4
Borhan, B.5
-
23
-
-
0015136835
-
Wavelength regulation in visual pigment chromophore. Large induced bathocromic shifts in retinol and related polyenes
-
Blatz PE, Baumgart N, Balasubramaniyan V, Balasubramaniyan P, Stedman E. Wavelength regulation in visual pigment chromophore. Large induced bathocromic shifts in retinol and related polyenes. Photochem Photobiol 1971;14:531-549.
-
(1971)
Photochem Photobiol
, vol.14
, pp. 531-549
-
-
Blatz, P.E.1
Baumgart, N.2
Balasubramaniyan, V.3
Balasubramaniyan, P.4
Stedman, E.5
-
24
-
-
0015762727
-
Wavelength regulation in visual pigments
-
Blatz PE, Liebman PA. Wavelength regulation in visual pigments. Exp Eye Res 1973;17:573-580.
-
(1973)
Exp Eye Res
, vol.17
, pp. 573-580
-
-
Blatz, P.E.1
Liebman, P.A.2
-
25
-
-
0000559536
-
a of the retinal protonated schiff-base in retinal proteins - A study with model compounds
-
a of the retinal protonated schiff-base in retinal proteins - a study with model compounds. J Am Chem Soc 1993;115:3772-3773.
-
(1993)
J Am Chem Soc
, vol.115
, pp. 3772-3773
-
-
Gat, Y.1
Sheves, M.2
-
26
-
-
0000163958
-
External point-charge model for wavelength regulation in visual pigments
-
Honig B, Dinur U, Nakanishi K, Baloghnair V, Gawinowicz MA, Arnaboldi M, Motto MG. external point-charge model for wavelength regulation in visual pigments. J Am Chem Soc 1979;101:7084-7086.
-
(1979)
J Am Chem Soc
, vol.101
, pp. 7084-7086
-
-
Honig, B.1
Dinur, U.2
Nakanishi, K.3
Baloghnair, V.4
Gawinowicz, M.A.5
Arnaboldi, M.6
Motto, M.G.7
-
27
-
-
0035923444
-
Wavelength dependent cis-trans isomerization in vision
-
Kim JE, Tauber MJ, Mathies RA. Wavelength dependent cis-trans isomerization in vision. Biochemistry 2001;40:13774-13778.
-
(2001)
Biochemistry
, vol.40
, pp. 13774-13778
-
-
Kim, J.E.1
Tauber, M.J.2
Mathies, R.A.3
-
29
-
-
0000562254
-
The adaptation of visual pigments to the photic environment
-
Photochemistry of vision, Dartnall HJA editor, New York: Springer
-
Lythgoe JN. The adaptation of visual pigments to the photic environment. In Handbook of sensory physiology, Vol.7/1, Photochemistry of vision, Dartnall HJA editor, New York: Springer, 1972. pp 604-624.
-
(1972)
Handbook of Sensory Physiology
, vol.7
, Issue.1
, pp. 604-624
-
-
Lythgoe, J.N.1
-
30
-
-
0026602578
-
Absorption-spectra of human cone pigments
-
Merbs SL, Nathans J. Absorption-spectra of human cone pigments. Nature 1992;356:433-435.
-
(1992)
Nature
, vol.356
, pp. 433-435
-
-
Merbs, S.L.1
Nathans, J.2
-
31
-
-
33847086348
-
Opsin shifts in bovine rhodopsin and bacteriorhodopsin - Comparison of 2 external point-charge models
-
Motto MG, Sheves M, Tsujimoto K, Baloghnair V, Nakanishi K. Opsin shifts in bovine rhodopsin and bacteriorhodopsin - comparison of 2 external point-charge models. J Am Chem Soc 1980;102:7947-7949.
-
(1980)
J Am Chem Soc
, vol.102
, pp. 7947-7949
-
-
Motto, M.G.1
Sheves, M.2
Tsujimoto, K.3
Baloghnair, V.4
Nakanishi, K.5
-
32
-
-
0022695490
-
Molecular genetics of human color vision: The genes encoding blue, green, and red pigments
-
Nathans J, Thomas D, Hogness DS. Molecular-genetics of human color-vision - the genes encoding blue, green, and red pigments. Science 1986;232:193-202. (Pubitemid 16046600)
-
(1986)
Science
, vol.232
, Issue.4747
, pp. 193-202
-
-
Nathans, J.1
Thomas, D.2
Hogness, D.S.3
-
33
-
-
0026352455
-
Design, chemical synthesis, and expression of genes for the 3 human color-vision pigments
-
Oprian DD, Asenjo AB, Lee N, Pelletier SL. Design, chemical synthesis, and expression of genes for the 3 human color-vision pigments. Biochemistry 1991;30:11367-11372.
-
(1991)
Biochemistry
, vol.30
, pp. 11367-11372
-
-
Oprian, D.D.1
Asenjo, A.B.2
Lee, N.3
Pelletier, S.L.4
-
34
-
-
0024448151
-
Calculation of protein extinction coefficients from amino-acid sequence data
-
Gill SC, Vonhippel PH. Calculation of protein extinction coefficients from amino-acid sequence data. Anal Biochem 1989;182:319-326.
-
(1989)
Anal Biochem
, vol.182
, pp. 319-326
-
-
Gill, S.C.1
Vonhippel, P.H.2
-
35
-
-
0031059866
-
Processing of X-ray diffraction data collected in oscillation mode
-
DOI 10.1016/S0076-6879(97)76066-X
-
Otwinowski Z, Minor W. Processing of X-ray diffraction data collected in oscillation mode. Macromol Crystallogr A 1997;276:307-326. (Pubitemid 27085611)
-
(1997)
Methods in Enzymology
, vol.276
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
36
-
-
0000560808
-
MOLREP: An Automated Program for Molecular Replacement
-
Vagin A, Teplyakov A. MOLREP: an automated program for molecular replacement. J Appl Crystallogr 1997;30:1022-1025. (Pubitemid 127485985)
-
(1997)
Journal of Applied Crystallography
, vol.30
, Issue.6
, pp. 1022-1025
-
-
Vagin, A.1
Teplyakov, A.2
-
37
-
-
0028103275
-
The CCP4 Suite - Programs for protein crystallography
-
Bailey S. The CCP4 Suite - programs for protein crystallography. Acta Crystallogr Sect D 1994;50:760-763.
-
(1994)
Acta Crystallogr Sect D
, vol.50
, pp. 760-763
-
-
Bailey, S.1
-
39
-
-
0030924992
-
Refinement of macromolecular structures by the maximum-likelihood method
-
Murshudov GN, Vagin AA, Dodson EJ. Refinement of macromolecular structures by the maximum-likelihood method. Acta Crystallogr Sect D 1997;53:240-255.
-
(1997)
Acta Crystallogr Sect D
, vol.53
, pp. 240-255
-
-
Murshudov, G.N.1
Vagin, A.A.2
Dodson, E.J.3
-
40
-
-
0032897075
-
Efficient anisotropic refinement of macromolecular structures using FFT
-
Murshudov GN, Vagin AA, Lebedev A, Wilson KS, Dodson EJ. Efficient anisotropic refinement of macromolecular structures using FFT. Acta Crystallogr Sect D 1999;55:247-255. (Pubitemid 29053823)
-
(1999)
Acta Crystallographica Section D: Biological Crystallography
, vol.55
, Issue.1
, pp. 247-255
-
-
Murshudov, G.N.1
Vagin, A.A.2
Lebedev, A.3
Wilson, K.S.4
Dodson, E.J.5
-
41
-
-
0032212015
-
Incorporation of prior phase information strengthens maximum-likelihood structure refinement
-
DOI 10.1107/S0907444998004119
-
Pannu NS, Murshudov GN, Dodson EJ, Read RJ. Incorporation of prior phase information strengthens maximum-likelihood structure refinement. Acta Crystallogr Sect D 1998;54:1285-1294. (Pubitemid 28560407)
-
(1998)
Acta Crystallographica Section D: Biological Crystallography
, vol.54
, Issue.6 II
, pp. 1285-1294
-
-
Pannu, N.S.1
Murshudov, G.N.2
Dodson, E.J.3
Read, R.J.4
-
42
-
-
0035182073
-
Use of TLS parameters to model anisotropic displacements in macromolecular refinement
-
Winn MD, Isupov MN, Murshudov GN. Use of TLS parameters to model anisotropic displacements in macromolecular refinement. Acta Crystallogr Sect D 2001;57:122-133.
-
(2001)
Acta Crystallogr Sect D
, vol.57
, pp. 122-133
-
-
Winn, M.D.1
Isupov, M.N.2
Murshudov, G.N.3
-
43
-
-
0033559918
-
Hydrogen bonding, hydrophobic interactions, and failure of the rigid receptor hypothesis
-
Davis AM, Teague SJ. Hydrogen bonding, hydrophobic interactions, and failure of the rigid receptor hypothesis. Angew Chem Int Ed 1999;38:737-749. (Pubitemid 129701960)
-
(1999)
Angewandte Chemie - International Edition
, vol.38
, Issue.6
, pp. 737-749
-
-
Davis, A.M.1
Teague, S.J.2
-
44
-
-
33751073728
-
Recognition forces in ligand-protein complexes: Blending information from different sources
-
DOI 10.1016/j.bcp.2006.05.022, PII S0006295206003248
-
Ermondi G, Caron G. Recognition forces in ligand-protein complexes: blending information from different sources. Biochem Pharmacol 2006;72:1633-1645. (Pubitemid 44764998)
-
(2006)
Biochemical Pharmacology
, vol.72
, Issue.12
, pp. 1633-1645
-
-
Ermondi, G.1
Caron, G.2
-
45
-
-
0021828928
-
Hydrogen-bonding and biological specificity analyzed by protein engineering
-
Fersht AR, Shi JP, Knilljones J, Lowe DM, Wilkinson AJ, Blow DM, Brick P, Carter P, Waye MMY, Winter G. Hydrogen-bonding and biological specificity analyzed by protein engineering. Nature 1985;314:235-238.
-
(1985)
Nature
, vol.314
, pp. 235-238
-
-
Fersht, A.R.1
Shi, J.P.2
Knilljones, J.3
Lowe, D.M.4
Wilkinson, A.J.5
Blow, D.M.6
Brick, P.7
Carter, P.8
Waye, M.M.Y.9
Winter, G.10
-
46
-
-
0022883904
-
Alteration of pK(a) of the bacteriorhodopsin protonated Schiff base. a study with model compounds
-
DOI 10.1021/bi00366a040
-
Baasov T, Sheves M. Alteration of pKa of the bacteriorhodopsin protonated Schiff-base - a study with model compounds. Biochemistry 1986;25:5249-5258. (Pubitemid 17016539)
-
(1986)
Biochemistry
, vol.25
, Issue.18
, pp. 5249-5258
-
-
Baasov, T.1
Sheves, M.2
-
47
-
-
0033609904
-
Structure of bacteriorhodopsin at 1.55 angstrom resolution
-
DOI 10.1006/jmbi.1999.3027
-
Luecke H, Schobert B, Richter HT, Cartailler JP, Lanyi JK. Structure of bacteriorhodopsin at 1.55 angstrom resolution. J Mol Biol 1999;291:899-911. (Pubitemid 29403619)
-
(1999)
Journal of Molecular Biology
, vol.291
, Issue.4
, pp. 899-911
-
-
Luecke, H.1
Schobert, B.2
Richter, H.-T.3
Cartailler, J.-P.4
Lanyi, J.K.5
-
48
-
-
0026054732
-
Effect of intermolecular orientation upon proton-transfer within a polarizable medium
-
Scheiner S, Duan XF. Effect of intermolecular orientation upon proton-transfer within a polarizable medium. Biophys J 1991;60:874-883.
-
(1991)
Biophys J
, vol.60
, pp. 874-883
-
-
Scheiner, S.1
Duan, X.F.2
|