Paenibacillus thailandensis sp. nov. and Paenibacillus nanensis sp. nov., xylanase-producing bacteria isolated from soil

International Journal of Systematic and Evolutionary Microbiology

Volumn 59, Issue 3, 2009, Pages 564-568

  Khianngam, Saowapar ^a   Akaracharanya, Ancharida ^a   Tanasupawat, Somboon ^a   Lee, Keun Chul ^b   Lee, Jung Sook ^b  

^a CHULALONGKORN UNIVERSITY   (Thailand)

^b Korea Research Institute of Bioscience and Biotechnology (KRIBB)   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

DIAMINOPIMELIC ACID; PEPTIDOGLYCAN; RIBOSOME RNA; RNA 16S;

ANAEROBIC BACTERIUM; ARTICLE; BACTERIAL METABOLISM; BACTERIAL SPORE; BACTERIAL STRAIN; BACTERIUM ISOLATE; CHEMOTAXONOMY; DNA BASE COMPOSITION; DNA DNA HYBRIDIZATION; FATTY ACID ANALYSIS; GRAM POSITIVE BACTERIUM; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PAENIBACILLUS; PAENIBACILLUS AGARIDEVORANS; PAENIBACILLUS NANENSIS; PAENIBACILLUS THAILANDENSIS; PHENOTYPE; PHYLOGENY; PRIORITY JOURNAL; RNA SEQUENCE; SEQUENCE HOMOLOGY; SOIL; THAILAND;

BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; DNA, BACTERIAL; DNA, RIBOSOMAL; FATTY ACIDS; GENES, RRNA; GRAM-POSITIVE ENDOSPORE-FORMING RODS; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; PHENOTYPE; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SOIL MICROBIOLOGY; SPORES, BACTERIAL; THAILAND; XYLOSIDASES;

PAENIBACILLUS; PAENIBACILLUS AGARIDEVORANS; POSIBACTERIA;

EID: 70350694164     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.000406-0     Document Type: Article

References (36)

1. Ash, C., Priest F. G. & Collins, M. D. (1994). Paenibacillus gen. nov. In Validation of the Publication of New Names and New Combinations Previously Effectively Published Outside the IJSB, List no. 51. Int J Syst Bacteriol 44, 852.
2. Aÿ, J., Goetz, F., Borriss, R. & Heinemann, U. (1998). Structure and function of the Bacillus hybrid enzyme GluXyn-1: native-like jellyroll fold preserved after insertion of autonomous globular domain. Proc Natl Acad Sci U S A 95, 6613-6618.
3. Barrow, G. I. & Feltham, R. K A. (1993). Cowan and Steel's Manual for the Identification of Medical Bacteria, 3rd edn, 331 pp. Cambridge: Cambridge University Press.
4. Berge, O., Guinebretière, M. H., Achousk, W., Normand, P. & Heulin, T. (2002). Paenibacillus graminis sp. nov. and Paenibacillus odorifer sp. nov., isolated from plant roots, soil and food. Int J Syst Evol Microbiol 52, 607-616.
5. Chou, J. H, Chou, Y. J, Lin, K Y., Sheu, S. Y., Sheu, D. S., Arun, A. B., Young, C. C. & Chen, W. M. (2007). Paenibacillus fonticola sp. nov., isolated from a warm spring. Int J Syst Evol Microbiol 57, 1346-1350.
6. Dasman, Kajiyama, S., Kawasaki, H., Yagi, M., Saki, T., Fukusaki, E. & Kobayashi, A. (2002). Paenibacillus glycanilyticus sp. nov., a novel species that degrades heteropolysaccharide produced by the cyanobacterium Nostoc commune. Int J Syst Evol Microbiol 52, 1669-1674.
7. Ezaki, T., Hashimoto, Y. & Yabuuchi, E. (1989). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioistopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224-229.
8. Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
9. Fitch, W. M. (1971). Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20, 406-416.
10. Forbes, L. (1981). Rapid flagella stain. J Clin Microbiol 13, 807-809.
11. Hespell, R. B. (1996). Fermentation of xylan, corn fiber, or sugars to acetoin and butanediol by Bacillus polymyxa strains. Curr Microbiol 32, 291-296.
12. Komagata, K. & Suzuki, K. (1987). Lipid and cell-wall analysis in bacterial systematics. Methods Microbiol 19, 161-207.
13. Lee, H.A., Shin, D.A., Cho, N. Q, Kim, H.-O., Shin, S.-Y., Im, S.-Y., Lee, H. B., Chun, S.-B. & Bal, S. (2000). Cloning, expression and nudeotide sequences of two xylanase genes from Paenibacillus sp. Biotechnol Lett 22, 387-392.
14. Morales, P., Madarro, A., Flors, A., Sandra, J. M. & Pérez-González J. A. (1995). Purification and characterization of a xylanase and an arabinofuranosidase firom Bacillus polymyxa. Enzyme Microb Technol 17, 424-429.
15. Nielsen, P. & Sorensen, J. (1997). Multi-target and medium-independent fungal antagonism by hydrolytic enzymes in Paenibacillus polymyxa and Bacillus pumilus strains from barley rhizosphere. FEMS Microbiol Ecol 22, 183-192.
16. Rivas, R., Mateos, P. F, Martínez-Molina, E. & Velázquez, E. (2005a). Paenibacillus xylanilyticus sp. nov., an airborne xylanolytic bacterium. Int J Syst Evol Microbiol 55, 405-408.,
17. Rivas, R., Mateos, P. F, Martínez-Molina, E & Velázquez, E. (2005b). Paenibacillus phyllosphaerae sp. nov., a xylanolytic bacterium isolated from the phyllosphere of Phoenix dactylifera. Int J Syst Evol Microbiol 55, 743-746.
18. Roux, V. & Raoult, D. (2004). Paenibacillus massiliensis sp. nov., Paenibacillus sanguinis sp. nov. and Paenibacillus timonensis sp. nov., isolated from blood cultures. Int J Syst Evol Microbiol 54, 1049-1054.
19. Ruijssenaars, H. J. & Hartmans, S. (2001). Plate screening methods for the detection of polysaccharase-producing microorganisms. Appl Microbiol Biotechnol 55, 143-149.
20. Saito, H. & Miura, K. (1963). Preparation of transforming deoxyribonucleic acid by phenol treatment. Biochim Biophys Acta 72, 619-629.
21. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
22. Sánchez, M. M., Fritze, D., Blanco, A., Spröer, C, Tindall, B. J, Schumann, P., Kroppenstedt, R. M, Diaz, P. & Pastor, F. I. J. (2005). Paenibacillus barcinonensis sp. nov., a xylanase-producing bacterium isolated from a rice field in the Ebro River delta. Int J Syst Evol Microbiol 53, 935-939.
23. Sasser, M. (1990). Identification of Bacteria by Gas Chromatography of Cellular Fatty Acids. Newark, DE: MIDI.
24. Scheldeman, P., Goossens, K, Rodriguez-Diaz, M., Pil, A, Goris, J, Herman, L, De Vos, P., Logan, N. A. & Heyndricky, M. (2004). Paenibacillus lactis sp. nov., isolated from raw and heat-treated milk. Int J Syst Evol Microbiol 54, 885-891.
25. Shida, O., Takagi, H., Kadowaki, K, Nakamura, L. K & Komagata, K. (1997). Transfer of Bacillus alginolyticus, Bacillus chondroitinus, Bacillus curdlanolyticus, Bacillus glucanolyticu5, Bacillus kobensis, and Bacillus thiaminolyticus to the genus Paenibacillus and emended description of the genus Paenibacillus. Int J Syst Bacteriol 47, 289-298.
26. Tamaoka, J. & Komagata, K. (1984). Determination of DNA base composition by reversed-phase high-performance liquid chromatography. FEMS Microbiol Lett 25, 125-128.
27. Tamura, K., Dudley, J., Nei, M. & Kumar, S. (2007). MEGA 4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24, 1596-1599.
28. Tanasupawat, S., Thawai, C., Yukphan, P., Moonmangmee, D., Itoh, T., Adachi, O. & Yamada, Y. (2004). Gluconobacter thailandicus sp. nov., an acetic acid bacterium in the a-Proteobacteria. J Gen Appl Microbiol 50, 159-167.
29. Teather, R. M. & Wood, P. J. (1982). Use of Congo red polysaccharide interaction in enumeration - of cellulolytic bacteria from bovine rumen. Appl Environ Microbiol 43, 777-780.
30. Ten, L N, Baek, S.-H., Irn, W.-T., Lee, M., Oh, H. W. & Lee, S.-T. (2006). Paenibacillus panacisoli sp. nov., a xylanolytic bacterium isolated from soil in a ginseng field in South Korea. Int J Syst Evol Microbiol 56, 2677-2681.
31. Thompson, J. D., Gibson, T. J., Plewnlak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_x windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
32. Uetanabaro, A. P., Wahrenburg, C., Hunger, W., Pukall, R., Spröer, C., Stackebrandt, E, de Canhos, V. P., Claus, D. & Fritze, D. (2003). Paenibacillus agarexedens sp. nov., nom. rev., and Paenibacillus agaridevorans sp. nov. Int J Syst Evol Microbiol 53, 1051-1057.
33. Van der Maarel, M. J. E. C., Veen, A. & Wijbenga, D. J. (2000). Paenibacillus granivorans sp. nov., a new Paenibacillus species which degrades native potato starch granules. Syst Appl Microbiol 23, 344-348.
34. Velázquez, E., de Miguel, T., Poza, M, Rivas, R., Rosselló-Mora, R. & Villa, T. G. (2004). Paenibacillus favisporus sp. nov., a xylanolytic bacterium isolated from cow faeces. Int J Syst Evol Microbiol 54, 59-64.
35. Yoon, J. H., Kang, S. J., Yeo, S. H. & Oh, T. K (2005). Paenibacillus alkaliterrae sp. nov., isolated from an allcatine soil in Korea. Int J Syst Evol Microbiol 53, 2339-2344.
36. Zamost, B. L., Nielsen, H. K. & Starnes, R. L. (1991). Thermostable enzymes for industrial applications. J Ind Microbiol 8, 71-82.