-
1
-
-
0035892272
-
CMA: Integration of fluid dynamics and microbial kinetics in modeling of large-scale fermentations
-
Vrábel P, Van Der Lans RGJM, Van Der Schot FN, Luyben KCAM, Xu B, Enfors S-O. CMA: integration of fluid dynamics and microbial kinetics in modeling of large-scale fermentations. Chem Eng J. 2001;84:463-474.
-
(2001)
Chem Eng J
, vol.84
, pp. 463-474
-
-
Vrábel, P.1
Van Der Lans, R.G.J.M.2
Van Der Schot, F.N.3
Luyben, K.C.A.M.4
Xu, B.5
Enfors, S-O.6
-
2
-
-
0041737798
-
General hybrid multizonal/ CFD approach for bioreactor modeling
-
Bezzo F, Macchietto S, Pantelides CC. General hybrid multizonal/ CFD approach for bioreactor modeling. AIChE J. 2003;49:2133-2148.
-
(2003)
AIChE J
, vol.49
, pp. 2133-2148
-
-
Bezzo, F.1
Macchietto, S.2
Pantelides, C.C.3
-
3
-
-
2542624575
-
A simplified CFD for three-dimensional analysis of fluid mixing, Mass Transfer and Bioreaction in a Fermenter Equipped with Triple Novel Geometry Impellers
-
Hristov HV, Mann R, Lossev V, Vlaev SD. A simplified CFD for three-dimensional analysis of fluid mixing, Mass Transfer and Bioreaction in a Fermenter Equipped with Triple Novel Geometry Impellers. Food Bioproducts Process. 2004;82:21-34.
-
(2004)
Food Bioproducts Process
, vol.82
, pp. 21-34
-
-
Hristov, H.V.1
Mann, R.2
Lossev, V.3
Vlaev, S.D.4
-
5
-
-
0029329082
-
Influence of substrate oscillations on acetate formation and growth yield in Escherichia coli glucose limited fed-batch cultivations
-
Neubauer P, Häggström L, Enfors S-O. Influence of substrate oscillations on acetate formation and growth yield in Escherichia coli glucose limited fed-batch cultivations. Biotechnol Bioeng. 1995;47: 139-146.
-
(1995)
Biotechnol Bioeng
, vol.47
, pp. 139-146
-
-
Neubauer, P.1
Häggström, L.2
Enfors, S-O.3
-
6
-
-
85047677968
-
Substrate gradients in bioreactors: Origin and consequences
-
Larsson G, Törnkvist M, Wernersson ES, Trägardh C, Noorman H, Enfors S-O. Substrate gradients in bioreactors: origin and consequences. Bioprocess Eng. 1996;14:281-289.
-
(1996)
Bioprocess Eng
, vol.14
, pp. 281-289
-
-
Larsson, G.1
Törnkvist, M.2
Wernersson, E.S.3
Trägardh, C.4
Noorman, H.5
Enfors, S-O.6
-
7
-
-
28644434445
-
Bioreactor hydrodynamic effect on Escherichia coli physiology: Experimental results and stochastic simulations
-
Delvigne F, Destain J, Thonart P. Bioreactor hydrodynamic effect on Escherichia coli physiology: experimental results and stochastic simulations. Bioprocess Biosystems Eng. 2005;28:131-137.
-
(2005)
Bioprocess Biosystems Eng
, vol.28
, pp. 131-137
-
-
Delvigne, F.1
Destain, J.2
Thonart, P.3
-
8
-
-
33646816768
-
Modeling the dynamics of E. coli populations in the three-dimensional turbulent field of a stirred-tank bioreactor-a structured-segregated approach
-
Lapin A, Schmid J, Reuss M. Modeling the dynamics of E. coli populations in the three-dimensional turbulent field of a stirred-tank bioreactor-a structured-segregated approach. Chem Eng Sci. 2006;61: 4783-4797.
-
(2006)
Chem Eng Sci
, vol.61
, pp. 4783-4797
-
-
Lapin, A.1
Schmid, J.2
Reuss, M.3
-
10
-
-
0035852880
-
Physiological responses to mixing in large scale bioreactors
-
Enfors SO, Jahic M, Rozkov A, Xu B, Hecker M, Jürgen B, Krüger E, Schweder T, Hamer G, O'Beirne D, Noisommit-Rizzi N, Reuss M, Boone L, Hewitt C, McFarlane C, Nienow A, Kovacs T, Trägårdh C, Fuchs L, Revstedt J, Friberg PC, Hjertager B, Blomsten G, Skogman H, Hjort S, Hoeks F, Lin HY, Neubauer P, Van Der Lans R, Luyben K, Vrabel P, Manelius Å. Physiological responses to mixing in large scale bioreactors. J Biotechnol. 2001;85:175-185.
-
(2001)
J Biotechnol
, vol.85
, pp. 175-185
-
-
Enfors, S.O.1
Jahic, M.2
Rozkov, A.3
Xu, B.4
Hecker, M.5
Jürgen, B.6
Krüger, E.7
Schweder, T.8
Hamer, G.9
O'Beirne, D.10
Noisommit-Rizzi, N.11
Reuss, M.12
Boone, L.13
Hewitt, C.14
McFarlane, C.15
Nienow, A.16
Kovacs, T.17
Trägårdh, C.18
Fuchs, L.19
Revstedt, J.20
Friberg, P.C.21
Hjertager, B.22
Blomsten, G.23
Skogman, H.24
Hjort, S.25
Hoeks, F.26
Lin, H.Y.27
Neubauer, P.28
Van Der Lans, R.29
Luyben, K.30
Vrabel, P.31
Manelius, Å.32
more..
-
12
-
-
0022093898
-
Simulation of CFSTR through development of a mathematical model for anaerobic growth of Escherichia coli cell population
-
Ataai MM, Shuler ML. Simulation of CFSTR through development of a mathematical model for anaerobic growth of Escherichia coli cell population. Biotechnol Bioeng. 1985;27:1051-1055.
-
(1985)
Biotechnol Bioeng
, vol.27
, pp. 1051-1055
-
-
Ataai, M.M.1
Shuler, M.L.2
-
13
-
-
0026964031
-
Modelling of microbial kinetics
-
Nielsen J, Villadsen J. Modelling of microbial kinetics. Chem Eng Sci. 1992;47(17-18):4225-4270.
-
(1992)
Chem Eng Sci
, vol.47
, Issue.17-18
, pp. 4225-4270
-
-
Nielsen, J.1
Villadsen, J.2
-
14
-
-
0033935072
-
Modelling of continuous microbial cultivation taking into account memory effects
-
Patarinska T, Dochain D, Agathos SN, Ganovski L. Modelling of continuous microbial cultivation taking into account memory effects. Bioprocess Eng. 2000;22:517-527.
-
(2000)
Bioprocess Eng
, vol.22
, pp. 517-527
-
-
Patarinska, T.1
Dochain, D.2
Agathos, S.N.3
Ganovski, L.4
-
15
-
-
0036222112
-
Static and dynamic behavior of a class of unstructured models of continuous bioreactors with growth associated product
-
Ajbar A, Fakeeha AH. Static and dynamic behavior of a class of unstructured models of continuous bioreactors with growth associated product. Bioprocess Eng. 2002;25:21-27.
-
(2002)
Bioprocess Eng
, vol.25
, pp. 21-27
-
-
Ajbar, A.1
Fakeeha, A.H.2
-
16
-
-
0037036697
-
A generic model for changes in microbial kinetic coefficients
-
Wirtz KW. A generic model for changes in microbial kinetic coefficients. J Biotechnol. 2002;97:147-162.
-
(2002)
J Biotechnol
, vol.97
, pp. 147-162
-
-
Wirtz, K.W.1
-
17
-
-
2342420357
-
Transient response of aerobic and anoxic activated sludge activities to sudden substrate concentration changes
-
Vanrolleghem PA, Sin G, Gernaey KV. Transient response of aerobic and anoxic activated sludge activities to sudden substrate concentration changes. Biotechnol Bioeng. 2004;86:277-290.
-
(2004)
Biotechnol Bioeng
, vol.86
, pp. 277-290
-
-
Vanrolleghem, P.A.1
Sin, G.2
Gernaey, K.V.3
-
18
-
-
70350691786
-
A new kinetic model of growing bacteria population
-
Perret J. A new kinetic model of growing bacteria population. J General Microbiol. 1960;2:589-617.
-
(1960)
J General Microbiol
, vol.2
, pp. 589-617
-
-
Perret, J.1
-
19
-
-
29544449820
-
A new approach for modelling simultaneous storage and growth processes for activated sludge systems under aerobic conditions
-
Sin G, Guisasola A, Pauw DJWD, Baeza JA, Carrera J, Vanrolleghem PA. A new approach for modelling simultaneous storage and growth processes for activated sludge systems under aerobic conditions. Biotechnol Bioeng. 2005;92:600-613.
-
(2005)
Biotechnol Bioeng
, vol.92
, pp. 600-613
-
-
Sin, G.1
Guisasola, A.2
Pauw, D.J.W.D.3
Baeza, J.A.4
Carrera, J.5
Vanrolleghem, P.A.6
-
21
-
-
0020767425
-
Application of a noninhibitory growth model to predict the transient response in a chemostat
-
Chiam HF, Harris IJ. Application of a noninhibitory growth model to predict the transient response in a chemostat. Biotechnol Bioeng. 1983;25:1613-1623.
-
(1983)
Biotechnol Bioeng
, vol.25
, pp. 1613-1623
-
-
Chiam, H.F.1
Harris, I.J.2
-
23
-
-
0042623472
-
On modeling of bioreactors for control
-
Ramkrishna D. On modeling of bioreactors for control. J Process Control. 2003;13:581-589.
-
(2003)
J Process Control
, vol.13
, pp. 581-589
-
-
Ramkrishna, D.1
-
24
-
-
39449095000
-
Stoichiometric modelling of cell metabolism
-
Llaneras F, Picó J. Stoichiometric modelling of cell metabolism. J Biosci Bioeng. 2008;105:1-11.
-
(2008)
J Biosci Bioeng
, vol.105
, pp. 1-11
-
-
Llaneras, F.1
Picó, J.2
-
25
-
-
0037074624
-
Population balance modeling promise for the future
-
Ramkrishna D, Mahoney AW. Population balance modeling. Promise for the future. Chem Eng Sci. 2002;57:595-606.
-
(2002)
Chem Eng Sci
, vol.57
, pp. 595-606
-
-
Ramkrishna, D.1
Mahoney, A.W.2
-
26
-
-
0032990166
-
Mathematical models of metabolic pathways
-
Varner J, Ramkrishna D. Mathematical models of metabolic pathways. Curr Opin Biotechnol. 1999;10:146-150.
-
(1999)
Curr Opin Biotechnol
, vol.10
, pp. 146-150
-
-
Varner, J.1
Ramkrishna, D.2
-
27
-
-
0037394192
-
Population balance equations for cell and microbial cultures revisited
-
Fredrickson AG. Population balance equations for cell and microbial cultures revisited. AIChE J. 2003;49:1050-1059.
-
(2003)
AIChE J
, vol.49
, pp. 1050-1059
-
-
Fredrickson, A.G.1
-
28
-
-
85047677192
-
Modelling of E.coli fermentations: Comparison of multicompartment and variable structure models
-
Tartakovsky B, Sheintuch M, Hilmer J-M, Scheper T. Modelling of E.coli fermentations: comparison of multicompartment and variable structure models. Bioprocess Eng. 1997;16:323-329.
-
(1997)
Bioprocess Eng
, vol.16
, pp. 323-329
-
-
Tartakovsky, B.1
Sheintuch, M.2
Hilmer, J-M.3
Scheper, T.4
-
30
-
-
0343907200
-
In vivo analysis of metabolic dynamics in Saccharomyces cerevisiae: II. Mathematical model
-
DOI 10.1002/(SICI)1097-0290(19970820)55:4<592::AID-BIT2>3.0.CO;2-C
-
Rizzi M, Baltes M, Theobald U, Reuss M. In vivo analysis of metabolic dynamics in Saccharomyces cerevisiae. II. Mathematical model. Biotechnol Bioeng. 1997;55:592-608. (Pubitemid 27318173)
-
(1997)
Biotechnology and Bioengineering
, vol.55
, Issue.4
, pp. 592-608
-
-
Rizzi, M.1
Baltes, M.2
Theobald, U.3
Reuss, M.4
-
31
-
-
0013218367
-
Metabolic Model for Glycogen-Accumulating Organisms in Anaerobic/Aerobic Activated Sludge Systems
-
DOI 10.1002/bit.10455
-
Zeng RJ, Loosdrecht MCMV, Yuan Z, Keller J. Metabolic model for glycogen-accumulating organisms in anaerobic/aerobic activated sludge systems. Biotechnol Bioeng. 2003;81:92-105. (Pubitemid 38181642)
-
(2003)
Biotechnology and Bioengineering
, vol.81
, Issue.1
, pp. 92-105
-
-
Zeng, R.J.1
Van Loosdrecht, M.C.M.2
Yuan, Z.3
Keller, J.4
-
32
-
-
0033047059
-
Modeling of overflow metabolism in batch and fed-batch cultures of Escherichia coli
-
Xu B, Jahic M, Enfors SO. Modeling of overflow metabolism in batch and fed-batch cultures of Escherichia coli. Biotechnol Prog. 1999;15:81-90.
-
(1999)
Biotechnol Prog
, vol.15
, pp. 81-90
-
-
Xu, B.1
Jahic, M.2
Enfors, S.O.3
-
33
-
-
0037075690
-
Modeling and simulation: Tools for metabolic engineering
-
Wiechert W. Modeling and simulation: tools for metabolic engineering. J Biotechnol. 2002;94:37-63.
-
(2002)
J Biotechnol
, vol.94
, pp. 37-63
-
-
Wiechert, W.1
-
34
-
-
0037025146
-
Dynamic modeling of the central carbon metabolism of Escherichia coli
-
Chassagnole C, Noisommit-Rizzi N, Schmid JW, Mauch K, Reuss M. Dynamic modeling of the central carbon metabolism of Escherichia coli. Biotechnol Bioeng. 2002;79:53-73.
-
(2002)
Biotechnol Bioeng
, vol.79
, pp. 53-73
-
-
Chassagnole, C.1
Noisommit-Rizzi, N.2
Schmid, J.W.3
Mauch, K.4
Reuss, M.5
-
35
-
-
0344099105
-
Integration of kinetic information on yeast sphingolipid metabolism in dynamical pathway models
-
Alvarez-Vasquez F, Sims KJ, Hannun YA, Voit EO. Integration of kinetic information on yeast sphingolipid metabolism in dynamical pathway models. J Theor Biol. 2004;226:265-291.
-
(2004)
J Theor Biol
, vol.226
, pp. 265-291
-
-
Alvarez-Vasquez, F.1
Sims, K.J.2
Hannun, Y.A.3
Voit, E.O.4
-
36
-
-
25144492110
-
Approximative kinetic formats used in metabolic network modeling
-
Heijnen JJ. Approximative kinetic formats used in metabolic network modeling. Biotechnol Bioeng. 2005;91:534-545.
-
(2005)
Biotechnol Bioeng
, vol.91
, pp. 534-545
-
-
Heijnen, J.J.1
-
37
-
-
44049087026
-
Integrating cybernetic modeling with pathway analysis provides a dynamic, systems-level description of metabolic control
-
Young JD, Henne KL, Morgan JA, Konopka AE, Ramkrishna D. Integrating cybernetic modeling with pathway analysis provides a dynamic, systems-level description of metabolic control. Biotechnol Bioeng. 2008;100:542-559.
-
(2008)
Biotechnol Bioeng
, vol.100
, pp. 542-559
-
-
Young, J.D.1
Henne, K.L.2
Morgan, J.A.3
Konopka, A.E.4
Ramkrishna, D.5
-
38
-
-
42449123222
-
Reconstruction and analysis of the genetic and metabolic regulatory networks of the central metabolism of Bacillus subtilis
-
Goelzer A, Bekkal-Brikci F, Martin-Verstraet I, Noirot P, Bessieres P, Aymerich S, Fromion V. Reconstruction and analysis of the genetic and metabolic regulatory networks of the central metabolism of Bacillus subtilis. BMC Systems Biology. 2008;2:20.
-
(2008)
BMC Systems Biology
, vol.2
, pp. 20
-
-
Goelzer, A.1
Bekkal-Brikci, F.2
Martin-Verstraet, I.3
Noirot, P.4
Bessieres, P.5
Aymerich, S.6
Fromion, V.7
-
39
-
-
0030152980
-
On physiological multiplicity and population heterogeneity of biological systems
-
Chung JD, Stephanopoulos G. On physiological multiplicity and population heterogeneity of biological systems. Chem Eng Sci. 1996;51:1509-1521.
-
(1996)
Chem Eng Sci
, vol.51
, pp. 1509-1521
-
-
Chung, J.D.1
Stephanopoulos, G.2
-
40
-
-
2342632479
-
Cell population balance modeling and control in continuous bioreactors
-
Mantzaris NV, Daoutidis P. Cell population balance modeling and control in continuous bioreactors. J Process Control. 2004;14:775-784.
-
(2004)
J Process Control
, vol.14
, pp. 775-784
-
-
Mantzaris, N.V.1
Daoutidis, P.2
-
41
-
-
0142122311
-
Dynamic modeling of microbial cell populations
-
Henson MA. Dynamic modeling of microbial cell populations. Curr Opin Biotechnol. 2003;14:460-467.
-
(2003)
Curr Opin Biotechnol
, vol.14
, pp. 460-467
-
-
Henson, M.A.1
-
42
-
-
0041304646
-
Dynamic modeling and control of yeast cell populations in continuous biochemical reactors
-
Henson MA. Dynamic modeling and control of yeast cell populations in continuous biochemical reactors. Comput Chem Eng. 2003; 27(8-9):1185-1199.
-
(2003)
Comput Chem Eng
, vol.27
, Issue.8-9
, pp. 1185-1199
-
-
Henson, M.A.1
-
43
-
-
15744367061
-
Cell ensemble modeling of metabolic oscillations in continuous yeast cultures
-
Henson MA. Cell ensemble modeling of metabolic oscillations in continuous yeast cultures. Comput Chem Eng. 2005;29:645-661.
-
(2005)
Comput Chem Eng
, vol.29
, pp. 645-661
-
-
Henson, M.A.1
-
44
-
-
0028058151
-
Toward a self-similar theory of microbial populations
-
Ramkrishna D. Toward a self-similar theory of microbial populations. Biotechnol Bioeng. 1994;43:138-148.
-
(1994)
Biotechnol Bioeng
, vol.43
, pp. 138-148
-
-
Ramkrishna, D.1
-
45
-
-
0032838485
-
Numerical solution of a mass structured cell population balance model in an environment of changing substrate concentration
-
Mantzaris NV, Liou J-J, Daoutidis P, Srienc F. Numerical solution of a mass structured cell population balance model in an environment of changing substrate concentration. J Biotechnol. 1999;71(1-3):157-174.
-
(1999)
J Biotechnol
, vol.71
, Issue.1-3
, pp. 157-174
-
-
Mantzaris, N.V.1
Liou, J-J.2
Daoutidis, P.3
Srienc, F.4
-
46
-
-
0022506043
-
Transient responses of continuously growing yeast cultures to dilution rate shifts: A sensitive means to analyze biology and the performance of equipment
-
Kätterer L, Allemann H, Käppeli O, Fiechter A. Transient responses of continuously growing yeast cultures to dilution rate shifts: a sensitive means to analyze biology and the performance of equipment. Biotechnol Bioeng. 1986;28:146-150.
-
(1986)
Biotechnol Bioeng
, vol.28
, pp. 146-150
-
-
Kätterer, L.1
Allemann, H.2
Käppeli, O.3
Fiechter, A.4
-
47
-
-
0025470011
-
Dynamic model development for a continuous culture of Saccharomyces cerevisiae
-
O'Neil DG, Lyberatos G. Dynamic model development for a continuous culture of Saccharomyces cerevisiae. Biotechnol Bioeng. 1990;36:437-445.
-
(1990)
Biotechnol Bioeng
, vol.36
, pp. 437-445
-
-
O'Neil, D.G.1
Lyberatos, G.2
-
49
-
-
0033179739
-
Kinetic modelling of biological phosphorus removal with a pure culture of Acinetobacter sp. under aerobic, anaerobic and transient operating conditions
-
Zafiri C, Kornaros M, Lyberatos G. Kinetic modelling of biological phosphorus removal with a pure culture of Acinetobacter sp. under aerobic, anaerobic and transient operating conditions. Water Res. 1999;33:2769-2788.
-
(1999)
Water Res
, vol.33
, pp. 2769-2788
-
-
Zafiri, C.1
Kornaros, M.2
Lyberatos, G.3
-
50
-
-
0010411168
-
Computational analysis of transient response to quantitative shock loadings of heterogeneous populations in continuous culture
-
Storer FF, Gaudy AF. Computational analysis of transient response to quantitative shock loadings of heterogeneous populations in continuous culture. Environ Sci Technol. 1969;3:143-149.
-
(1969)
Environ Sci Technol
, vol.3
, pp. 143-149
-
-
Storer, F.F.1
Gaudy, A.F.2
-
52
-
-
0033118890
-
Regulation by nutrient limitation
-
Ferenci T. Regulation by nutrient limitation. Curr Opin Microbiol. 1999;2:208-213.
-
(1999)
Curr Opin Microbiol
, vol.2
, pp. 208-213
-
-
Ferenci, T.1
-
53
-
-
0032735903
-
Growth of bacterial cultures 50 years on: Toward an uncertainty principle instead of constants in bacterial growth kinetics
-
Ferenci T. 'Growth of bacterial cultures' 50 years on: toward an uncertainty principle instead of constants in bacterial growth kinetics. Res Microbiol. 1999;150:431-438.
-
(1999)
Res Microbiol
, vol.150
, pp. 431-438
-
-
Ferenci, T.1
-
54
-
-
0034646790
-
Influence of controled glucose oscillations on a fed-batch process of reocombinant Escherichia coli
-
Lin HL, Neubauer P. Influence of controled glucose oscillations on a fed-batch process of reocombinant Escherichia coli. J Biotechnol. 2000;79:27-37.
-
(2000)
J Biotechnol
, vol.79
, pp. 27-37
-
-
Lin, H.L.1
Neubauer, P.2
-
55
-
-
0033205354
-
Dynamics of glucose uptake by single Escherichia coli cells
-
Natarajan A, Srienc F. Dynamics of glucose uptake by single Escherichia coli cells. Metab Eng. 1999;1:320-333.
-
(1999)
Metab Eng
, vol.1
, pp. 320-333
-
-
Natarajan, A.1
Srienc, F.2
-
56
-
-
0033805378
-
Glucose uptake rates of single E. coli cells grown in glucose-limited chemostat cultures
-
Natarajan A, Srienc F. Glucose uptake rates of single E. coli cells grown in glucose-limited chemostat cultures. J Microbiol Methods. 2000;42:87-96.
-
(2000)
J Microbiol Methods
, vol.42
, pp. 87-96
-
-
Natarajan, A.1
Srienc, F.2
-
57
-
-
0030200309
-
Adaptation to life at micromolar nutrient levels: The regulation of Escherichia coli glucose transport by endoinduction and cAMP
-
Ferenci T. Adaptation to life at micromolar nutrient levels: the regulation of Escherichia coli glucose transport by endoinduction and cAMP. FEMS Microbiol Rev. 1996;18:301-317.
-
(1996)
FEMS Microbiol Rev
, vol.18
, pp. 301-317
-
-
Ferenci, T.1
-
58
-
-
0035811172
-
Determination of the maximum specific uptake capacities for glucose and oxygen in glucose-limited fed-batch cultivations of Escherichia coli
-
Lin HY, Mathiszik B, Xu B, Enfors SO, Neubauer P. Determination of the maximum specific uptake capacities for glucose and oxygen in glucose-limited fed-batch cultivations of Escherichia coli. Biotechnol Bioeng. 2001;73:347-357.
-
(2001)
Biotechnol Bioeng
, vol.73
, pp. 347-357
-
-
Lin, H.Y.1
Mathiszik, B.2
Xu, B.3
Enfors, S.O.4
Neubauer, P.5
-
59
-
-
3543021486
-
Dynamic behavior of microbial populations in stirred bioreactors simulated with euler-lagrange methods: Traveling along the lifelines of single cells
-
Lapin A, Muller D, Reuss M. Dynamic behavior of microbial populations in stirred bioreactors simulated with euler-lagrange methods: traveling along the lifelines of single cells. Ind Eng Chem Res. 2004;43:4647-4656.
-
(2004)
Ind Eng Chem Res
, vol.43
, pp. 4647-4656
-
-
Lapin, A.1
Muller, D.2
Reuss, M.3
|