Nanoscale architecture dictates detection profile of surface-confined DNA by MALDI-TOF MS

Analytical Chemistry

Volumn 81, Issue 21, 2009, Pages 8839-8845

  Hong, Min ^a,b   Zhou, Xin ^a   Li, Jiping ^a   Tian, Yuan ^a   Zhu, Jin ^a  

^a NANJING UNIVERSITY   (China)

^b LIAOCHENG UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

AU NANOPARTICLE; CHARGED NANOPARTICLES; CONTROL EXPERIMENTS; COVALENTLY BOUND; DETECTION CAPABILITY; LAYER-BY-LAYER ASSEMBLIES; MALDI TOF MS; MULTI-LAYERED; NANOPARTICLE LAYERS; NANOPOROUS DIELECTRIC FILM; NANOSCALE ARCHITECTURES; NOBLE METAL NANOPARTICLES; POROUS STRUCTURES; POSITIVELY CHARGED; STRAND SYSTEMS;

DIELECTRIC FILMS; DNA; GENES; NANOPARTICLES; NANOSTRUCTURED MATERIALS; NUCLEIC ACIDS; OLIGONUCLEOTIDES; PRECIOUS METALS;

GOLD;

DNA; GOLD NANOPARTICLE; METAL NANOPARTICLE; OLIGONUCLEOTIDE; POLYMER; SILICON DIOXIDE; SULFUR;

ARTICLE; CONTROLLED STUDY; COVALENT BOND; DESORPTION; DNA HYBRIDIZATION; ELECTRICITY; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; NANOANALYSIS; NANOPORE; SURFACE PROPERTY;

DNA; GOLD; METAL NANOPARTICLES; NANOPARTICLES; NANOSTRUCTURES; OLIGONUCLEOTIDE PROBES; SILICON DIOXIDE; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION;

EID: 70350633076     PISSN: 00032700     EISSN: None     Source Type: Journal    
DOI: 10.1021/ac901815v     Document Type: Article

References (54)

1. (a) Alivisatos, P. Nat. Biotechnol. 2004, 22, 47-52.
2. (b) Ho, H.-A.; Najari, A.; Leclerc, M. Acc. Chem. Res. 2008, 41, 168-178.
3. (a) Saiki, R. K.; Walsh, P. S.; Levenson, C. H.; Erlich, H. A Proc. Natl. Acad. Sci. U.S.A. 1989, 86, 6230-6234.
4. (b) Drmanac, R.; Labat, I.; Brukner, I.; Crkvenjakov, R. Genomics 1989, 4, 114-128.
5. (c) Strezoska, Z.; Paunesku, T.; Radosavljevic, D.; Labat, I.; Drmanac, R.; Crkvenjakov, R. Proc. Natl. Acad. Sci. U.S.A. 1991, 88, 10089-10093.
6. (d) Pease, A. C.; Solas, D.; Sullivan, E. J.; Cronin, M. T.; Holmes, C. P.; Fodor, S. P. A. Proc. Natl. Acad. Sci. U.S.A. 1994, 91, 5022-5026.
7. (a) ODonnell, M. J.; Tang, K.; Koster, H.; Smith, C. L.; Cantor, C. R. Anal. Chem. 1997, 69, 2438-2443.
8. (b) Tsubery, H.; Mrksich, M. Langmuir 2008, 24, 5433-5438.
9. (a) Fodor, S. P. A.; Read, J. L.; Pirrung, M. C.; Stryer, L.; Lu, A. T.; Solas, D. Science 1991, 251, 767-773.
10. (b) Pirrung, M. C. Angew. Chem., Int. Ed. 2002, 41, 1276-1289.
11. Chrisey, L. A.; Lee, G. U.; O'Ferrall, C. E. Nucleic Acids Res. 1996, 24, 3031-3039.
12. (a) Ban, L.; Mrksich, M. Angew. Chem., Int. Ed. 2008, 47, 3396-3399.
13. (b) Marin, V. L.; Bayburt, T. H.; Sligar, S. G.; Mrksich, M. Angew. Chem., Int. Ed. 2007, 46, 8796-8798.
14. (c) Yeo, W.-S.; Min, D.-H.; Hsieh, R. W.; Greene, G. L.; Mrksich, M. Angew. Chem., Int. Ed. 2005, 44, 5480-5483.
15. (d) Min, D.-H.; Su, J.; Mrksich, M. Angew. Chem., Int. Ed. 2004, 43, 5973-5977.
16. (e) Su, J.; Mrksich, M. Angew. Chem., Int. Ed. 2002, 41, 4715-4718.
17. See, for example:(a) Tse, B. N.; Snyder, T. M.; Shen, Y.; Liu, D. R. J. Am. Chem. Soc. 2008, 130, 15611-15626.
18. (b) Rozeman, M. M.; Kanan, M. W.; Liu, D. R. J. Am. Chem. Soc. 2007, 129, 14933-14938.
19. (c) Snyder, T. M.; Liu, D. R. Angew. Chem., Int. Ed. 2005, 44, 7379-7382.
20. (a) Buckle, M.; Williams, R. M.; Negroni, M.; Buc, H Proc. Natl. Acad. Sci. U.S.A. 1996, 93, 889-894.
21. (b) Brockman, J. M.; Nelson, B. P.; Corn, R. M. Annu. Rev. Phys. Chem. 2000, 51, 41-63.
22. (c) Niikura, K.; Matsuno, H.; Okahata, Y. J. Am. Chem. Soc. 1998, 120, 8537-8538.
23. (d) Wang, J.; Jiang, M.; Palecek, E. Bioelectrochem. Bioenerg. 1999, 48, 477-480.
24. Lee, C. Y.; Harbers, G. M.; Grainger, D. W.; Gamble, L. J.; Castner, D. G. J. Am. Chem. Soc. 2007, 129, 9429-9438.
25. Karas, M.; Hillenkamp, F. Anal. Chem. 1988, 60, 2299-2301.
26. Dass, C. Principles and Practices of Biological Mass Spectrometry; Wiley: New York, 2001.
27. (a) Wu, K. J.; Shaler, T. A.; Becker, C. H. Anal. Chem. 1994, 66, 1637-1645.
28. (b) Wang, B. H.; Biemann, K. Anal. Chem. 1994, 66, 1918-1924.
29. (c) Kirpekar, F.; Nordhoff, E.; Kristiansen, K.; Roepstorff, P.; Hahner, S.; Hillenkamp, F. Rapid Commun. Mass Spectrom. 1995, 9, 525-531.
30. (a) Liu, Y. H.; Bai, J.; Liang, X.; Lubman, D. M.; Venta, P. J. Anal. Chem. 1995, 67, 3482-3490.
31. (b) Gut, I. G.; Jeffery, W. A.; Pappin, D. J. C.; Beck, S. Rapid Commun. Mass Spectrom. 1997, 11, 43-50.
32. (c) Tang, W.; Zhu, L.; Smith, L. M. Anal. Chem. 1997, 69, 302-312.
33. (a) Jurinke, C.; van den Boom, D.; Collazo, V.; Luchow, A.; Jacob, A.; Koster, H. Anal. Chem. 1997, 69, 904-910.
34. (b) Kim, S.; Ruparel, H. D.; Gilliam, T. C.; Ju, J. Nat. Rev. Genet. 2003, 4, 1001-1008.
35. (a) Plutowski, U.; Richert, C. Angew. Chem., Int. Ed. 2005, 44, 621-625.
36. (b) Moses, S.; Brewer, S. H.; Lowe, L. B.; Lappi, S. E.; Gilvey, L. B. G.; Sauthier, M.; Tenent, R. C.; Feldheim, D. L.; Franzen, S. Langmuir 2004, 20, 11134-11140.
37. (c) Dombi, K. L.; Griesang, N.; Richert, C. Synthesis 2002, 816-824.
38. (d) Petrovykh, D. Y.; Kimura-Suda, H.; Whitman, L. J.; Tarlov, M. J. J. Am. Chem. Soc. 2003, 125, 5219-5226.
39. (a) Olofsson, L.; Rindzevicius, T.; Pfeiffer, I.; Kall, M.; Hook, F. Langmuir 2003, 19, 10414-10419.
40. (b) Lee, S.; Perez-Luna, V. H. Anal. Chem. 2005, 77, 7204-7211.
41. (a) Mahmoud, K. A.; Hrapovic, S.; Luong, J. H. T. ACS Nano 2008, 2, 1051-1057.
42. (b) Mani, V.; Chikkaveeraiah, B. V.; Patel, V.; Gutkind, J. S.; Rusling, J. F. ACS Nano 2009, 3, 585-594.
43. Grabar, K. C.; Freeman, R. G.; Hommer, M. B.; Natan, M. J. Anal. Chem. 1995, 67, 735-743.
44. (a) Tang, K.; Fu, D.-J.; Julien, D.; Braun, A.; Cantor, C. R.; K-ster, H. Proc. Natl. Acad. Sci. U.S.A. 1999, 96, 10016-10020.
45. (b) Jin, L.; Horgan, A.; Levicky, R. Langmuir 2003, 19, 6968-6975.
46. (a) Rogers, Y. H.; Baucom, P. J.; Huang, Z. J.; Bogdanov, V.; Anderson, S.; Boyce-Jacino, M. T. Anal. Biochem. 1999, 266, 23-30.
47. (b) Lemeshko, S. V.; Powdrill, T.; Belosludtsev, Y. Y.; Hogan, M. Nucleic Acids Res. 2001, 29, 3051-3058.
48. (c) Zhao, X. D.; Nampalli, S.; Serino, A. J.; Kumar, S. Nucleic Acids Res. 2001, 29, 955-959.
49. (a) Proudnikov, D.; Timofeev, E.; Mirzabekov, A. D. Anal. Biochem. 1998, 159, 34-41.
50. (b) Kodadek, T. Chem. Biol. 2001, 8, 105-115.
51. Zhou, X.; Wu, L.; Zhou, J. Langmuir 2004, 20, 8877-8885.
52. Hong, M.; Qiu, F.; Huang, L. L.; Zhu, J. J. Phys. Chem. C 2008, 112, 11078-11081.
53. Liu, Y. H.; Bai, J.; Liang, X. L.; Lubman, D. M. Anal. Chem. 1995, 67, 3482-3490.
54. Tang, K.; Fu, D. J.; Kotter, S.; Cotter, R. J.; Cantor, C. R.; Koster, H. Nucleic Acids Res. 1995, 23, 3126-3131.