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Volumn 261, Issue 4, 2009, Pages 531-539

The first peptides: The evolutionary transition between prebiotic amino acids and early proteins

Author keywords

Origin of life; Peptide structure and function; Prebiotic peptides; Protein ancestor

Indexed keywords

AMINO ACID; MAGNESIUM ION; PROTEIN; RNA POLYMERASE; TRANSALDOLASE;

EID: 70350567248     PISSN: 00225193     EISSN: 10958541     Source Type: Journal    
DOI: 10.1016/j.jtbi.2009.09.004     Document Type: Article
Times cited : (63)

References (54)
  • 2
    • 0035997510 scopus 로고    scopus 로고
    • Relative amino acid concentrations as a signature for parent body processes of carbonaceous chondrites
    • Botta O., Glavin D.P., Kminek G., and Bada J.L. Relative amino acid concentrations as a signature for parent body processes of carbonaceous chondrites. Orig. Life Evol. Biosphere 32 (2002) 143-163
    • (2002) Orig. Life Evol. Biosphere , vol.32 , pp. 143-163
    • Botta, O.1    Glavin, D.P.2    Kminek, G.3    Bada, J.L.4
  • 3
    • 33845386068 scopus 로고    scopus 로고
    • The emergence of cells during the origin of life
    • Chen I.A. The emergence of cells during the origin of life. Science 314 (2006) 1558-1559
    • (2006) Science , vol.314 , pp. 1558-1559
    • Chen, I.A.1
  • 4
    • 2542533863 scopus 로고    scopus 로고
    • Membrane growth can generate a transmembrane pH gradient in fatty acid vesicles
    • Chen I.A., and Szostak J.W. Membrane growth can generate a transmembrane pH gradient in fatty acid vesicles. Proc. Natl. Acad. Sci. USA 101 (2004) 7965-7970
    • (2004) Proc. Natl. Acad. Sci. USA , vol.101 , pp. 7965-7970
    • Chen, I.A.1    Szostak, J.W.2
  • 5
    • 4444281964 scopus 로고    scopus 로고
    • The emergence of competition between model protocells
    • Chen I.A., Roberts R.W., and Szostak J.W. The emergence of competition between model protocells. Science 305 (2004) 1474-1476
    • (2004) Science , vol.305 , pp. 1474-1476
    • Chen, I.A.1    Roberts, R.W.2    Szostak, J.W.3
  • 6
    • 33646726735 scopus 로고    scopus 로고
    • The prebiotic synthesis of pyrimidines in frozen solution
    • Cleaves II H.J., Nelson K.E., and Miller S.L. The prebiotic synthesis of pyrimidines in frozen solution. Naturwissenschaften 93 (2006) 228-231
    • (2006) Naturwissenschaften , vol.93 , pp. 228-231
    • Cleaves II, H.J.1    Nelson, K.E.2    Miller, S.L.3
  • 8
    • 0022267496 scopus 로고
    • Boundary structures are formed by organic components of the murchison carbonaceous chondrite
    • Deamer D.W. Boundary structures are formed by organic components of the murchison carbonaceous chondrite. Nature 317 (1985) 792-794
    • (1985) Nature , vol.317 , pp. 792-794
    • Deamer, D.W.1
  • 10
    • 33750054721 scopus 로고    scopus 로고
    • Montmorillonite-catalysed formation of RNA-oligomers: the possible role of catalysis in the origins of life
    • Ferris J.P. Montmorillonite-catalysed formation of RNA-oligomers: the possible role of catalysis in the origins of life. Phil. Trans. R. Soc. B 361 (2006) 1777-1786
    • (2006) Phil. Trans. R. Soc. B , vol.361 , pp. 1777-1786
    • Ferris, J.P.1
  • 12
    • 0031662136 scopus 로고    scopus 로고
    • The genetic code is one in a million
    • Freeland S.J., and Hurst L.D. The genetic code is one in a million. J. Mol. Evol. 47 (1998) 238-248
    • (1998) J. Mol. Evol. , vol.47 , pp. 238-248
    • Freeland, S.J.1    Hurst, L.D.2
  • 13
    • 36849148382 scopus 로고
    • The RNA world
    • Gilbert W. The RNA world. Nature 319 (1986) 618
    • (1986) Nature , vol.319 , pp. 618
    • Gilbert, W.1
  • 14
    • 0037172779 scopus 로고    scopus 로고
    • Metal ions requirements for structure and catalysis of an RNA ligase ribozyme
    • Glasner M., Bergman N., and Bartel D.P. Metal ions requirements for structure and catalysis of an RNA ligase ribozyme. Biochemistry 41 (2002) 8103-8112
    • (2002) Biochemistry , vol.41 , pp. 8103-8112
    • Glasner, M.1    Bergman, N.2    Bartel, D.P.3
  • 15
    • 4143145167 scopus 로고    scopus 로고
    • 10-residue folded peptide designed by segment statistics
    • Honda S., Yamasaki K., Sawada Y., and Morii H. 10-residue folded peptide designed by segment statistics. Structure 12 (2004) 1507-1518
    • (2004) Structure , vol.12 , pp. 1507-1518
    • Honda, S.1    Yamasaki, K.2    Sawada, Y.3    Morii, H.4
  • 16
    • 33747828645 scopus 로고    scopus 로고
    • Causes of trends in amino-acid gain and loss
    • Hurst L.D., Feil E.J., and Rocha E.P.C. Causes of trends in amino-acid gain and loss. Nature 442 (2006) E11-E12
    • (2006) Nature , vol.442
    • Hurst, L.D.1    Feil, E.J.2    Rocha, E.P.C.3
  • 17
    • 0037791613 scopus 로고    scopus 로고
    • Evolutionary connection between the catalytic subunits of DNA-dependent RNA polymerases and eukaryotic RNA-dependent RNA polymerases and the origin of RNA polymerases
    • Iyer L.M., Koonin E.V., and Aravind L. Evolutionary connection between the catalytic subunits of DNA-dependent RNA polymerases and eukaryotic RNA-dependent RNA polymerases and the origin of RNA polymerases. BMC Struc. Biol. 3 (2003) 1
    • (2003) BMC Struc. Biol. , vol.3 , pp. 1
    • Iyer, L.M.1    Koonin, E.V.2    Aravind, L.3
  • 19
    • 0035906978 scopus 로고    scopus 로고
    • RNA-catalyzed RNA polymerization: accurate and general RNA-templated primer extension
    • Johnston W.K., Unrau P.J., Lawrence M.S., Glasner M.E., and Bartel D.P. RNA-catalyzed RNA polymerization: accurate and general RNA-templated primer extension. Science 292 (2001) 1319-1325
    • (2001) Science , vol.292 , pp. 1319-1325
    • Johnston, W.K.1    Unrau, P.J.2    Lawrence, M.S.3    Glasner, M.E.4    Bartel, D.P.5
  • 20
    • 33846144382 scopus 로고    scopus 로고
    • A search for biomolecules in Sagittarius B2 (LMH) with the Australia telescope compact array
    • Jones P.A., Cunningham M.R., Godfrey P.D., and Cragg D.M. A search for biomolecules in Sagittarius B2 (LMH) with the Australia telescope compact array. Mon. Not. R. Astron. Soc. 374 (2007) 579-589
    • (2007) Mon. Not. R. Astron. Soc. , vol.374 , pp. 579-589
    • Jones, P.A.1    Cunningham, M.R.2    Godfrey, P.D.3    Cragg, D.M.4
  • 22
    • 0030819170 scopus 로고    scopus 로고
    • Substrate-directed formation of small biocatalysts under prebiotic conditions
    • Kochavi E., Bar-Nun A., and Fleminger G. Substrate-directed formation of small biocatalysts under prebiotic conditions. J. Mol. Evol. 45 (1997) 342-351
    • (1997) J. Mol. Evol. , vol.45 , pp. 342-351
    • Kochavi, E.1    Bar-Nun, A.2    Fleminger, G.3
  • 24
    • 70350567608 scopus 로고
    • Dose C.K., Fox S.W., Deborin G.A., and Paslovskaya T.E. (Eds), Plenum, New York
    • Kvenvolden K.A. In: Dose C.K., Fox S.W., Deborin G.A., and Paslovskaya T.E. (Eds). The Origin of Life and Evolutionary Biochemistry (1974), Plenum, New York 301-309
    • (1974) The Origin of Life and Evolutionary Biochemistry , pp. 301-309
    • Kvenvolden, K.A.1
  • 25
    • 13444254300 scopus 로고    scopus 로고
    • PDBsum more: new summaries and analyses of the known 3D structures of proteins and nucleic acids
    • Laskowski R.A., Chistyakov V.V., and Thornton J.M. PDBsum more: new summaries and analyses of the known 3D structures of proteins and nucleic acids. Nucleic Acids Res. 33 (2005) D266-D268
    • (2005) Nucleic Acids Res. , vol.33
    • Laskowski, R.A.1    Chistyakov, V.V.2    Thornton, J.M.3
  • 28
    • 0342928575 scopus 로고
    • Production of some organic compounds under possible primitive earth conditions
    • Miller. S.L. Production of some organic compounds under possible primitive earth conditions. J. Am. Chem. Soc. 77 (1955) 2351-2361
    • (1955) J. Am. Chem. Soc. , vol.77 , pp. 2351-2361
    • Miller., S.L.1
  • 29
    • 0015998646 scopus 로고
    • The atmosphere of the primitive earth and the prebiotic synthesis of amino acids
    • Miller S.L. The atmosphere of the primitive earth and the prebiotic synthesis of amino acids. Orig. Life 5 (1974) 139-151
    • (1974) Orig. Life , vol.5 , pp. 139-151
    • Miller, S.L.1
  • 30
    • 0023488772 scopus 로고
    • Which organic compounds could have occurred on the prebiotic Earth?
    • Miller S.L. Which organic compounds could have occurred on the prebiotic Earth?. Cold Spring Harbor Symp. Quant. Biol. 52 (1987) 17-27
    • (1987) Cold Spring Harbor Symp. Quant. Biol. , vol.52 , pp. 17-27
    • Miller, S.L.1
  • 32
    • 30744437406 scopus 로고    scopus 로고
    • Amino acids on the rampant primordial Earth: electric discharges and the hot salty ocean
    • Plankensteiner K., Reiner H., and Rode B.M. Amino acids on the rampant primordial Earth: electric discharges and the hot salty ocean. Mol. Divers. 10 (2006) 3-7
    • (2006) Mol. Divers. , vol.10 , pp. 3-7
    • Plankensteiner, K.1    Reiner, H.2    Rode, B.M.3
  • 33
    • 0042870202 scopus 로고    scopus 로고
    • Étude de l'activité prébiotique potentielle de l'acide borique
    • Prieur B.P. Étude de l'activité prébiotique potentielle de l'acide borique. C. R. Acad. Sci. Paris, Chimie/Chemistry 4 (2001) 1-4
    • (2001) C. R. Acad. Sci. Paris, Chimie/Chemistry , vol.4 , pp. 1-4
    • Prieur, B.P.1
  • 34
    • 0036174748 scopus 로고    scopus 로고
    • Crystal structure of PMM/PGM: an enzyme in the biosynthetic pathway of P. aeruginosa virulence factors
    • Regni C., Tipton P.A., and Beamer L.J. Crystal structure of PMM/PGM: an enzyme in the biosynthetic pathway of P. aeruginosa virulence factors. Structure 10 (2002) 269-279
    • (2002) Structure , vol.10 , pp. 269-279
    • Regni, C.1    Tipton, P.A.2    Beamer, L.J.3
  • 35
    • 33747156132 scopus 로고    scopus 로고
    • Complexes of the enzyme phosphomannomutase/phosphoglucomutase with a slow substrate and inhibitor
    • Regni C., Shackelford G.S., and Beamer L.J. Complexes of the enzyme phosphomannomutase/phosphoglucomutase with a slow substrate and inhibitor. J. Acta Cryst. F 62 (2006) 722-726
    • (2006) J. Acta Cryst. F , vol.62 , pp. 722-726
    • Regni, C.1    Shackelford, G.S.2    Beamer, L.J.3
  • 36
    • 33744950935 scopus 로고    scopus 로고
    • The reaction of phosphohexomutase from Pseudomonas aeruginosa. Structural insights into a simple processive enzyme
    • Regni C., Schramm A.M., and Beamer L.J. The reaction of phosphohexomutase from Pseudomonas aeruginosa. Structural insights into a simple processive enzyme. J. Biol. Chem. 281 (2006) 15564-15571
    • (2006) J. Biol. Chem. , vol.281 , pp. 15564-15571
    • Regni, C.1    Schramm, A.M.2    Beamer, L.J.3
  • 39
    • 33947389130 scopus 로고    scopus 로고
    • The structural basis of ribozyme-catalyzed RNA assembly
    • Robertson M.P., and Scott W.G. The structural basis of ribozyme-catalyzed RNA assembly. Science 315 (2007) 1549-1553
    • (2007) Science , vol.315 , pp. 1549-1553
    • Robertson, M.P.1    Scott, W.G.2
  • 40
    • 0033133988 scopus 로고    scopus 로고
    • The combination of salt induced peptide formation reaction and clay catalysis: a way to higher peptides under primitive earth conditions
    • Rode B.M., Son H.L., Suwannachot Y., and Bujdak J. The combination of salt induced peptide formation reaction and clay catalysis: a way to higher peptides under primitive earth conditions. Orig. Life Evol. Biosphere 29 (1999) 273-286
    • (1999) Orig. Life Evol. Biosphere , vol.29 , pp. 273-286
    • Rode, B.M.1    Son, H.L.2    Suwannachot, Y.3    Bujdak, J.4
  • 41
    • 17844393875 scopus 로고    scopus 로고
    • Semipermeable lipid bilayers exhibit diastereoselectivity favoring ribose
    • Sacerdote M.G., and Szostak J.W. Semipermeable lipid bilayers exhibit diastereoselectivity favoring ribose. Proc. Natl. Acad. Sci. USA 102 (2005) 6004-6008
    • (2005) Proc. Natl. Acad. Sci. USA , vol.102 , pp. 6004-6008
    • Sacerdote, M.G.1    Szostak, J.W.2
  • 44
    • 85012979065 scopus 로고
    • Possible role of copper and sodium chloride in prebiotic evolution of peptides
    • Schwendinger M.G., and Rode B.M. Possible role of copper and sodium chloride in prebiotic evolution of peptides. Anal. Sci. 5 (1989) 411-414
    • (1989) Anal. Sci. , vol.5 , pp. 411-414
    • Schwendinger, M.G.1    Rode, B.M.2
  • 45
    • 3342884205 scopus 로고    scopus 로고
    • Evolutionary trace analysis of the α-d-phosphohexomutase superfamily
    • Shackelford G.S., Regni C.A., and Beamer L.J. Evolutionary trace analysis of the α-d-phosphohexomutase superfamily. Protein Sci. 13 (2006) 2130-2138
    • (2006) Protein Sci. , vol.13 , pp. 2130-2138
    • Shackelford, G.S.1    Regni, C.A.2    Beamer, L.J.3
  • 46
    • 0028831258 scopus 로고    scopus 로고
    • Specific aminoacylation of C4N hairpin RNAs with the cognate aminoacyl-adenylates in the presence of a dipeptide: origin of the genetic code
    • Shimizu M. Specific aminoacylation of C4N hairpin RNAs with the cognate aminoacyl-adenylates in the presence of a dipeptide: origin of the genetic code. J. Biochem. 117 (1996) 23-26
    • (1996) J. Biochem. , vol.117 , pp. 23-26
    • Shimizu, M.1
  • 47
    • 23144467150 scopus 로고    scopus 로고
    • Histidine and its anticodon GpUpG are similar metabolic reaction rate enhancers: molecular origin of the genetic code
    • Shimizu M. Histidine and its anticodon GpUpG are similar metabolic reaction rate enhancers: molecular origin of the genetic code. J. Phys. Soc. Jpn. 73 (2004) 323-326
    • (2004) J. Phys. Soc. Jpn. , vol.73 , pp. 323-326
    • Shimizu, M.1
  • 48
    • 34547397571 scopus 로고    scopus 로고
    • Amino acid and anticodon enhance metabolic reaction rates weakly but specifically: genetic code world
    • Shimizu M. Amino acid and anticodon enhance metabolic reaction rates weakly but specifically: genetic code world. J. Phys. Soc. Jpn. 76 (2007) 053801
    • (2007) J. Phys. Soc. Jpn. , vol.76 , pp. 053801
    • Shimizu, M.1
  • 49
    • 0347481357 scopus 로고    scopus 로고
    • Crystal structure of the Citrobacter freundii dihydroxyacetone kinase reveals an eight-stranded α-helical barrel ATP-binding domain
    • Siebold C., Arnold I., Garcia-Alles L.F., Baumann U., and Erni B. Crystal structure of the Citrobacter freundii dihydroxyacetone kinase reveals an eight-stranded α-helical barrel ATP-binding domain. J. Biol. Chem. 278 (2003) 48236-48244
    • (2003) J. Biol. Chem. , vol.278 , pp. 48236-48244
    • Siebold, C.1    Arnold, I.2    Garcia-Alles, L.F.3    Baumann, U.4    Erni, B.5
  • 52
    • 0026358279 scopus 로고
    • Volcanic production of polyphosphates and its relevance to prebiotic evolution
    • Yamagata Y., Watanabe H., Saitoh M., and Namba T. Volcanic production of polyphosphates and its relevance to prebiotic evolution. Nature 352 (1991) 516-519
    • (1991) Nature , vol.352 , pp. 516-519
    • Yamagata, Y.1    Watanabe, H.2    Saitoh, M.3    Namba, T.4
  • 53
  • 54
    • 0015223268 scopus 로고
    • Mutational trends and random processes in the evolution of informational macromolecules
    • Zuckerkandl E., Derancourt J., and Vogel H. Mutational trends and random processes in the evolution of informational macromolecules. J. Mol. Biol. 59 (1971) 473-490
    • (1971) J. Mol. Biol. , vol.59 , pp. 473-490
    • Zuckerkandl, E.1    Derancourt, J.2    Vogel, H.3


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