-
1
-
-
0001362448
-
Evolutionary genetics of birds I: Relationships among North American thrushes and allies
-
AVISE, J. C., J. C. PATTON, AND C. F. AQUADRO. 1980. Evolutionary genetics of birds I: Relationships among North American thrushes and allies. Auk 97:135-147.
-
(1980)
Auk
, vol.97
, pp. 135-147
-
-
Avise, J.C.1
Patton, J.C.2
Aquadro, C.F.3
-
2
-
-
0035527383
-
Exploring among-site rate variation in a maximum likelihood framework using empirical data: Effects of model assumptions on estimates of topology, branch lengths and bootstrap support
-
BUCKLEY, T. R., C. SIMON, AND G. K. CHAMBERS. 2001. Exploring among-site rate variation in a maximum likelihood framework using empirical data: Effects of model assumptions on estimates of topology, branch lengths and bootstrap support. Systematic Biology 50:67-86.
-
(2001)
Systematic Biology
, vol.50
, pp. 67-86
-
-
Buckley, T.R.1
Simon, C.2
Chambers, G.K.3
-
3
-
-
0032191419
-
Molecular phylogeny and ecological diversification in a clade of New World songbirds (genus Vireo)
-
CICERO, C., AND N. K. JOHNSON. 1998. Molecular phylogeny and ecological diversification in a clade of New World songbirds (genus Vireo). Molecular Ecology 7:1359-1370.
-
(1998)
Molecular Ecology
, vol.7
, pp. 1359-1370
-
-
Cicero, C.1
Johnson, N.K.2
-
4
-
-
0036368312
-
Phylogeny and character evolution in the Empidonax group of Tyrant Flycatchers (Aves: Tyrranidae): A test of W. E. Lanyon's hypothesis using mtDNA sequences
-
CICERO, C., AND N. K. JOHNSON. 2002 Phylogeny and character evolution in the Empidonax group of Tyrant Flycatchers (Aves: Tyrranidae): A test of W. E. Lanyon's hypothesis using mtDNA sequences. Molecular Phylogenetics and Evolution 22:289-302.
-
(2002)
Molecular Phylogenetics and Evolution
, vol.22
, pp. 289-302
-
-
Cicero, C.1
Johnson, N.K.2
-
5
-
-
0004036217
-
-
Princeton University Press, Princeton, New Jersey
-
CLEMENT, P. 2000. Thrushes. Princeton University Press, Princeton, New Jersey.
-
(2000)
Thrushes
-
-
Clement, P.1
-
6
-
-
0022189995
-
The evolution of avian migration systems between temperate and tropical regions of the New World
-
Cox, G. W. 1985. The evolution of avian migration systems between temperate and tropical regions of the New World. American Naturalist 126:451-474.
-
(1985)
American Naturalist
, vol.126
, pp. 451-474
-
-
Cox, G.W.1
-
7
-
-
0025343497
-
Sequence and gene organization of the chicken mitochondrial genome, a novel gene order in higher vertebrates
-
DESJARDINS, P., AND R. MORAIS. 1990. Sequence and gene organization of the chicken mitochondrial genome, a novel gene order in higher vertebrates. Journal of Molecular Biology and Evolution 121:599-634.
-
(1990)
Journal of Molecular Biology and Evolution
, vol.121
, pp. 599-634
-
-
Desjardins, P.1
Morais, R.2
-
8
-
-
0001074448
-
Adaptive modifications and ecological isolating mechanisms in the thrush genera Catharus and Hylocichla
-
DILGER, W. C. 1956a. Adaptive modifications and ecological isolating mechanisms in the thrush genera Catharus and Hylocichla. Wilson Bulletin 68:171-199.
-
(1956)
Wilson Bulletin
, vol.68
, pp. 171-199
-
-
Dilger, W.C.1
-
9
-
-
0038025444
-
Hostile behavior and reproductive isolating mechanisms in the avian genera Catharus and Hylocichla
-
DILGER, W. C. 1956b. Hostile behavior and reproductive isolating mechanisms in the avian genera Catharus and Hylocichla. Auk 73:314-353.
-
(1956)
Auk
, vol.73
, pp. 314-353
-
-
Dilger, W.C.1
-
11
-
-
0004128472
-
-
Cambridge University Press, Cambridge, United Kingdom
-
EDWARDS, A. W. F. 1972. Likelihood. Cambridge University Press, Cambridge, United Kingdom.
-
(1972)
Likelihood
-
-
Edwards, A.W.F.1
-
12
-
-
0002303691
-
Relevance of microevolutionary processes to higher level molecular systematics
-
(D. P. Mindell, Ed.). Academic Press, London
-
EDWARDS, S. V. 1997. Relevance of microevolutionary processes to higher level molecular systematics. Pages 251-278 in Avian Molecular Evolution and Systematics (D. P. Mindell, Ed.). Academic Press, London.
-
(1997)
Avian Molecular Evolution and Systematics
, pp. 251-278
-
-
Edwards, S.V.1
-
13
-
-
0019797407
-
Evolutionary trees from DNA sequences: A maximum likelihood approach
-
FELSENSTEIN, J. 1981. Evolutionary trees from DNA sequences: A maximum likelihood approach. Journal of Molecular Evolution 17:368-376.
-
(1981)
Journal of Molecular Evolution
, vol.17
, pp. 368-376
-
-
Felsenstein, J.1
-
14
-
-
0022203256
-
Phylogenies and the comparative method
-
FELSENSTEIN, J. 1985. Phylogenies and the comparative method. The American Naturalist 125:1-15.
-
(1985)
The American Naturalist
, vol.125
, pp. 1-15
-
-
Felsenstein, J.1
-
15
-
-
0032055555
-
Evolution on a volcanic conveyor belt: Using phylogeographic reconstructions and K-Ar-based ages of the Hawaiian Islands to estimate molecular evolutionary rates
-
FLEISCHER, R. C., C. E. MCINTOSH, AND C. L. TARR. 1998. Evolution on a volcanic conveyor belt: Using phylogeographic reconstructions and K-Ar-based ages of the Hawaiian Islands to estimate molecular evolutionary rates. Molecular Ecology 7:533-545.
-
(1998)
Molecular Ecology
, vol.7
, pp. 533-545
-
-
Fleischer, R.C.1
Mcintosh, C.E.2
Tarr, C.L.3
-
16
-
-
0002411812
-
The ecology and evolution of avian migration systems
-
Academic Press, London
-
GAUTHREAUX, S. A., JR. 1982. The ecology and evolution of avian migration systems. Pages 93-168 In Avian Biology, vol. VI. Academic Press, London.
-
(1982)
Avian Biology
, vol.6
, pp. 93-168
-
-
Gauthreaux S.A., Jr.1
-
17
-
-
0038363569
-
Phenetic affinities of the Wood Thrush, Hylocichla mustelina (Aves: Turdinae)
-
GIBSON, A. R., M. A. GATES, AND R. ZACH. 1976. Phenetic affinities of the Wood Thrush, Hylocichla mustelina (Aves: Turdinae). Canadian Journal of Zoology 54:1679-1687.
-
(1976)
Canadian Journal of Zoology
, vol.54
, pp. 1679-1687
-
-
Gibson, A.R.1
Gates, M.A.2
Zach, R.3
-
18
-
-
0034351387
-
Likelihood-based tests of topologies in phylogenetics
-
GOLDMAN, N., J. P. ANDERSON, AND A. G. RODRIGO. 2000. Likelihood-based tests of topologies in phylogenetics. Systematic Biology 49:652-670.
-
(2000)
Systematic Biology
, vol.49
, pp. 652-670
-
-
Goldman, N.1
Anderson, J.P.2
Rodrigo, A.G.3
-
19
-
-
0030125185
-
Molecular phylogenetics and biogeography of tanagers in the genus Rhamphocelus (Aves)
-
HACKETT, S. J. 1996. Molecular phylogenetics and biogeography of tanagers in the genus Rhamphocelus (Aves). Molecular Phylogenetics and Evolution 5:368-382.
-
(1996)
Molecular Phylogenetics and Evolution
, vol.5
, pp. 368-382
-
-
Hackett, S.J.1
-
20
-
-
0003399647
-
-
Ph.D. dissertation, University of Chicago, Chicago
-
HARSHMAN, J. 1996. Phylogeny, evolutionary rates, and ducks. Ph.D. dissertation, University of Chicago, Chicago.
-
(1996)
Phylogeny, Evolutionary Rates, and Ducks
-
-
Harshman, J.1
-
22
-
-
0022376704
-
Dating of the human-ape splitting by a molecular clock of mitochondrial DNA
-
HASEGAWA, M., H. KISHINO, AND T. A. YANO. 1985. Dating of the human-ape splitting by a molecular clock of mitochondrial DNA. Journal of Molecular Evolution 22:160-174.
-
(1985)
Journal of Molecular Evolution
, vol.22
, pp. 160-174
-
-
Hasegawa, M.1
Kishino, H.2
Yano, T.A.3
-
23
-
-
0027423606
-
Recovering phylogenetic signal from DNA sequences: Relationships within the Corvine assemblage (Class Aves) as inferred from complete sequences of the mitochondrial DNA cytochrome b gene
-
HELM-BYCHOWSKI, K., AND J. CRACRAFT. 1993. Recovering phylogenetic signal from DNA sequences: Relationships within the Corvine assemblage (Class Aves) as inferred from complete sequences of the mitochondrial DNA cytochrome b gene. Molecular Biology and Evolution 10:1196-1214.
-
(1993)
Molecular Biology and Evolution
, vol.10
, pp. 1196-1214
-
-
Helm-Bychowski, K.1
Cracraft, J.2
-
24
-
-
0038701834
-
The relationships of the Wood Thrush (Hylocichla mustelina): Some indications from the electrophoresis of blood proteins
-
HENDRICKSON, H. T., AND M. YOW. 1973. The relationships of the Wood Thrush (Hylocichla mustelina): Some indications from the electrophoresis of blood proteins. Condor 75:301-305.
-
(1973)
Condor
, vol.75
, pp. 301-305
-
-
Hendrickson, H.T.1
Yow, M.2
-
26
-
-
0030902563
-
Phylogenetic methods come of age: Testing hypotheses in an evolutionary context
-
HUELSENBECK, J. P., AND B. RANNALA. 1997. Phylogenetic methods come of age: Testing hypotheses in an evolutionary context. Science 276: 227-232.
-
(1997)
Science
, vol.276
, pp. 227-232
-
-
Huelsenbeck, J.P.1
Rannala, B.2
-
27
-
-
0032135217
-
Comparing molecular evolution in two mitochondrial protein coding genes (cytochrome b and ND2) in the dabbling ducks (tribe Anatini)
-
JOHNSON, K. P., AND M. D. SORENSON. 1998. Comparing molecular evolution in two mitochondrial protein coding genes (cytochrome b and ND2) in the dabbling ducks (tribe Anatini). Molecular Phylogenetics and Evolution 10:82-94.
-
(1998)
Molecular Phylogenetics and Evolution
, vol.10
, pp. 82-94
-
-
Johnson, K.P.1
Sorenson, M.D.2
-
28
-
-
0032805623
-
Phylogeny and biogeography in the evolution of migration: Shorebirds of the Charadrius complex
-
JOSEPH, L., E. P. LESSA, AND L. CHRISTIDIS. 1999. Phylogeny and biogeography in the evolution of migration: Shorebirds of the Charadrius complex. Journal of Biogeography 26:329-342.
-
(1999)
Journal of Biogeography
, vol.26
, pp. 329-342
-
-
Joseph, L.1
Lessa, E.P.2
Christidis, L.3
-
29
-
-
0032808798
-
Evidence supporting the recent origin and species status of the Timberline Sparrow
-
KLICKA, J., R. M. ZINK, J. C. BARLOW, W. B. MACGILLIVRAY, AND T. J. DOYLE. 1999. Evidence supporting the recent origin and species status of the Timberline Sparrow. Condor 101:577-588.
-
(1999)
Condor
, vol.101
, pp. 577-588
-
-
Klicka, J.1
Zink, R.M.2
Barlow, J.C.3
Macgillivray, W.B.4
Doyle, T.J.5
-
30
-
-
0024382879
-
Dynamics of mitochondrial DNA evolution in animals: Amplification and sequencing with conserved primers
-
KOCHER, T. D., W. K. THOMAS, A. MEYER, S. V. EDWARDS, S. PAABO, F. X. VILLABLANCA, AND A. C. WILSON. 1989. Dynamics of mitochondrial DNA evolution in animals: Amplification and sequencing with conserved primers. Proceedings of the National Academy of Sciences USA 86:6196-6200.
-
(1989)
Proceedings of the National Academy of Sciences USA
, vol.86
, pp. 6196-6200
-
-
Kocher, T.D.1
Thomas, W.K.2
Meyer, A.3
Edwards, S.V.4
Paabo, S.5
Villablanca, F.X.6
Wilson, A.C.7
-
31
-
-
0027042338
-
Evolutionary precursors of long-distance migration: Resource availability and movement patterns in Neotropical landbirds
-
LEVEY, D. J., AND F. G. STILES. 1992. Evolutionary precursors of long-distance migration: Resource availability and movement patterns in Neotropical landbirds. American Naturalist 140:447-476.
-
(1992)
American Naturalist
, vol.140
, pp. 447-476
-
-
Levey, D.J.1
Stiles, F.G.2
-
32
-
-
0028094163
-
Phylogenetic methods for inferring the evolutionary history and processes of change in discretely valued characters
-
MADDISON, D. R. 1994. Phylogenetic methods for inferring the evolutionary history and processes of change in discretely valued characters. Annual Review of Entomology 39:267-292.
-
(1994)
Annual Review of Entomology
, vol.39
, pp. 267-292
-
-
Maddison, D.R.1
-
33
-
-
0004056233
-
-
Sinauer Associates, Sunderland, Massachusetts
-
MADDISON, W. P., AND D. R. MADDISON. 1992. MACCLADE, Version 3. Sinauer Associates, Sunderland, Massachusetts.
-
(1992)
MACCLADE, Version 3
-
-
Maddison, W.P.1
Maddison, D.R.2
-
34
-
-
0000058501
-
Inferring phylogenies from mtDNA variation: Mitochondrial-gene trees versus nuclear-gene trees
-
MOORE, W. E. 1995 Inferring phylogenies from mtDNA variation: Mitochondrial-gene trees versus nuclear-gene trees. Evolution 49:718-726.
-
(1995)
Evolution
, vol.49
, pp. 718-726
-
-
Moore, W.E.1
-
35
-
-
0033422612
-
Reconstructing ancestor states with maximum likelihood: Support for one- and two-rate models
-
MOOERS, A. Ø., AND D. SCHLUTER. 1999. Reconstructing ancestor states with maximum likelihood: Support for one- and two-rate models. Systematic Biology 48:623-632.
-
(1999)
Systematic Biology
, vol.48
, pp. 623-632
-
-
Mooers, A.Ø.1
Schluter, D.2
-
36
-
-
0001271184
-
The distribution of an avian guild along a temperate elevational gradient: The importance and expression of competition
-
NOON, B. R. 1981. The distribution of an avian guild along a temperate elevational gradient: The importance and expression of competition. Ecological Monographs 51:105-124.
-
(1981)
Ecological Monographs
, vol.51
, pp. 105-124
-
-
Noon, B.R.1
-
37
-
-
0000593996
-
Bicknell's Thrush: Taxonomic status and distribution
-
OUELLET, H. R. 1993. Bicknell's Thrush: Taxonomic status and distribution. Wilson Bulletin 105:545-572.
-
(1993)
Wilson Bulletin
, vol.105
, pp. 545-572
-
-
Ouellet, H.R.1
-
38
-
-
0033422611
-
The maximum likelihood approach to reconstructing ancestral character states of discrete characters on phylogenies
-
PAGEL, M. 1999. The maximum likelihood approach to reconstructing ancestral character states of discrete characters on phylogenies. Systematic Biology 48:612-622.
-
(1999)
Systematic Biology
, vol.48
, pp. 612-622
-
-
Pagel, M.1
-
39
-
-
0037687527
-
An ornithological comedy of errors: Catharus occidentalis and C. frantzii
-
PHILLIPS, A. R. 1969. An ornithological comedy of errors: Catharus occidentalis and C. frantzii. Auk 86:605-623.
-
(1969)
Auk
, vol.86
, pp. 605-623
-
-
Phillips, A.R.1
-
40
-
-
0031773680
-
Modeltest: Testing the model of DNA substitution
-
POSADA, D., AND K. A. CRANDALL. 1998. Modeltest: Testing the model of DNA substitution. Bioinformatics 14:817-818.
-
(1998)
Bioinformatics
, vol.14
, pp. 817-818
-
-
Posada, D.1
Crandall, K.A.2
-
41
-
-
0035527410
-
Selecting the best-fit model of nucleotide substitution
-
POSADA, D., AND K. A. CRANDALL. 2001. Selecting the best-fit model of nucleotide substitution. Systematic Biology 50:580-601.
-
(2001)
Systematic Biology
, vol.50
, pp. 580-601
-
-
Posada, D.1
Crandall, K.A.2
-
42
-
-
0000798006
-
Dietary relationships of migrant and resident birds from a humid forest in central Panama
-
POULIN, B., AND G. LEFEBVRE. 1996. Dietary relationships of migrant and resident birds from a humid forest in central Panama. Auk 113:277-287.
-
(1996)
Auk
, vol.113
, pp. 277-287
-
-
Poulin, B.1
Lefebvre, G.2
-
43
-
-
0037687531
-
Relationships between two partly sympatric species of thrushes (Catharus) in Mexico
-
RAITT, R. J., AND J. W. HARDY. 1970. Relationships between two partly sympatric species of thrushes (Catharus) in Mexico. Auk 87:20-57.
-
(1970)
Auk
, vol.87
, pp. 20-57
-
-
Raitt, R.J.1
Hardy, J.W.2
-
46
-
-
0008634844
-
Bicknell's Thrush (Catharus bicknelli)
-
(A. Poole and F. Gill, Eds.). Academy of Natural Sciences, Philadelphia, and American Ornithologists' Union, Washington D.C.
-
RIMMER, C. C. K. P. MCFARLAND, W. G. ELLISON, AND J. E. GOETZ. 1995. Bicknell's Thrush (Catharus bicknelli). In The Birds of North America, no. 592 (A. Poole and F. Gill, Eds.). Academy of Natural Sciences, Philadelphia, and American Ornithologists' Union, Washington D.C.
-
(1995)
The Birds of North America
, vol.592
-
-
Rimmer, C.C.1
Mcfarland, K.P.2
Ellison, W.G.3
Goetz, J.E.4
-
47
-
-
0004247460
-
-
Uppsala University. or ftp.sysbot.uu.se
-
RONQUIST, F. 1996. DIVA version 1.1. [Online.] Uppsala University. Available at ftp.uu.se or ftp.sysbot.uu.se.
-
(1996)
DIVA Version 1.1
-
-
Ronquist, F.1
-
48
-
-
0031476053
-
Dispersal-vicariance analysis: A new approach to the quantification of historical biogeography
-
RONQUIST, F. 1997. Dispersal-vicariance analysis: A new approach to the quantification of historical biogeography. Systematic Biology 46:195-203.
-
(1997)
Systematic Biology
, vol.46
, pp. 195-203
-
-
Ronquist, F.1
-
49
-
-
0028984193
-
The evolution of Palearctic migration: The case for southern ancestry
-
SAFRIEL, U. N. 1995. The evolution of Palearctic migration: The case for southern ancestry. Israel Journal of Zoology 41:417-431.
-
(1995)
Israel Journal of Zoology
, vol.41
, pp. 417-431
-
-
Safriel, U.N.1
-
50
-
-
0023850178
-
Primer-directed amplification of DNA with a thermo-stable DNA polymerase
-
SAIKI, R. K., D. H, GELFARD, S. STFFEL, S. J. SHARF, R. H. HIGUCHI, G. T. HORM, K. B. MULLIS, AND H. A. ERLICH. 1988. Primer-directed amplification of DNA with a thermo-stable DNA polymerase. Science 239:487-491.
-
(1988)
Science
, vol.239
, pp. 487-491
-
-
Saiki, R.K.1
Gelfard, D.H.2
Stffel, S.3
Sharf, S.J.4
Higuchi, R.H.5
Horm, G.T.6
Mullis, K.B.7
Erlich, H.A.8
-
51
-
-
0032766857
-
Multiple comparisons of log-likelihoods with applications to phylogenetic inference
-
SHIMODAIRA, H., AND M. HASEGAWA. 1999. Multiple comparisons of log-likelihoods with applications to phylogenetic inference. Molecular Biology and Evolution 16:1114-1116.
-
(1999)
Molecular Biology and Evolution
, vol.16
, pp. 1114-1116
-
-
Shimodaira, H.1
Hasegawa, M.2
-
52
-
-
0001958888
-
Evolutionary implications of habitat relations between permanent and winter resident landbirds in Costa Rica
-
(A. Keast and E. S. Morton, Eds.) Smithsonian Institution Press, Washington D.C.
-
STILES, F. G. 1980. Evolutionary implications of habitat relations between permanent and winter resident landbirds in Costa Rica. Pages 421-435 in Migrant Birds in the Neotropics (A. Keast and E. S. Morton, Eds.) Smithsonian Institution Press, Washington D.C.
-
(1980)
Migrant Birds in the Neotropics
, pp. 421-435
-
-
Stiles, F.G.1
-
54
-
-
0001336205
-
Phylogenetic Inference
-
(D. M. Hillis and C. Mortiz, Eds.). Sinauer Associates, Sunderland, Massachusetts
-
SWOFFORD, D. L., G. J. OLSON, P. J. WADDELL, AND D. M. HILLIS. 1996. Phylogenetic Inference. Pages 407-514 in Molecular Systematics (D. M. Hillis and C. Mortiz, Eds.). Sinauer Associates, Sunderland, Massachusetts.
-
(1996)
Molecular Systematics
, pp. 407-514
-
-
Swofford, D.L.1
Olson, G.J.2
Waddell, P.J.3
Hillis, D.M.4
-
55
-
-
0029100727
-
Phylogenetic test of the molecular clock and linearized trees
-
TAKEZAKI, N., A. RHETSKY, AND M. NEI. 1995. Phylogenetic test of the molecular clock and linearized trees. Molecular Biology and Evolution 12:823-833.
-
(1995)
Molecular Biology and Evolution
, vol.12
, pp. 823-833
-
-
Takezaki, N.1
Rhetsky, A.2
Nei, M.3
-
56
-
-
0032695683
-
Dispersal, vicariance and clocks: Historical biogeography and speciation in a cosmopolitan passerine genus (Anthus: Motacillidae)
-
VOELKER, G. 1999. Dispersal, vicariance and clocks: Historical biogeography and speciation in a cosmopolitan passerine genus (Anthus: Motacillidae). Evolution 53:1536-1552.
-
(1999)
Evolution
, vol.53
, pp. 1536-1552
-
-
Voelker, G.1
-
57
-
-
0002289720
-
Neotropical bird migration during the ice ages: Orientation and ecology
-
WILLIAMS, T. C., AND T. WEBB III. 1996. Neotropical bird migration during the ice ages: Orientation and ecology. Auk 113:105-118.
-
(1996)
Auk
, vol.113
, pp. 105-118
-
-
Williams, T.C.1
Webb T. III2
-
58
-
-
0037687530
-
The relationship between Hylocichla and Catharus (Turdinae)
-
WINKER, K., AND J. H. RAPPOLE. 1988. The relationship between Hylocichla and Catharus (Turdinae). Auk 105:392-394.
-
(1988)
Auk
, vol.105
, pp. 392-394
-
-
Winker, K.1
Rappole, J.H.2
-
59
-
-
0028214103
-
Estimating the pattern of nucleotide substitution
-
YANG, Z. 1994. Estimating the pattern of nucleotide substitution. Journal of Molecular Evolution 39:105-111.
-
(1994)
Journal of Molecular Evolution
, vol.39
, pp. 105-111
-
-
Yang, Z.1
|