메뉴 건너뛰기




Volumn 124, Issue 2, 2007, Pages 537-551

A molecular evaluation of the North American "grassland" sparrow clade

Author keywords

Emberizidae; Grassland sparrow clade; Mexican endemics; Mitochondrial DNA; Molecular systematics; Oriturus; Sparrows; Xenozpiza

Indexed keywords

ADAPTIVE RADIATION; CYTOCHROME; GRASSLAND; MITOCHONDRIAL DNA; MOLECULAR ANALYSIS; MORPHOLOGY; PHYLOGENETICS; SONGBIRD; TAXONOMY;

EID: 34249055227     PISSN: 00048038     EISSN: None     Source Type: Journal    
DOI: 10.1642/0004-8038(2007)124[537:AMEOTN]2.0.CO;2     Document Type: Article
Times cited : (21)

References (60)
  • 1
    • 0037329391 scopus 로고    scopus 로고
    • Bayes or bootstrap? A simulation study comparing the performance of Bayesian Markov chain Monte Carlo sampling and bootstrapping in assessing phylogenetic confidence
    • ALFARO, M. E., S. ZOLLER, AND F. LUTZONI. 2003. Bayes or bootstrap? A simulation study comparing the performance of Bayesian Markov chain Monte Carlo sampling and bootstrapping in assessing phylogenetic confidence. Molecular Biology and Evolution 20:255-266.
    • (2003) Molecular Biology and Evolution , vol.20 , pp. 255-266
    • ALFARO, M.E.1    ZOLLER, S.2    LUTZONI, F.3
  • 3
    • 0342956420 scopus 로고
    • AMERICAN ORNITHOLOGISTS' UNION, 2nd ed. American Ornithologists' Union, New York
    • AMERICAN ORNITHOLOGISTS' UNION. 1895. Checklist of North American Birds, 2nd ed. American Ornithologists' Union, New York.
    • (1895) Checklist of North American Birds
  • 4
    • 15244353076 scopus 로고
    • AMERICAN ORNITHOLOGISTS' UNION, 3rd ed. American Ornithologists' Union, New York
    • AMERICAN ORNITHOLOGISTS' UNION. 1910. Checklist of North American Birds, 3rd ed. American Ornithologists' Union, New York.
    • (1910) Checklist of North American Birds
  • 5
    • 0003605613 scopus 로고
    • AMERICAN ORNITHOLOGISTS' UNION, 5th ed. American Ornithologists' Union, Baltimore, Maryland
    • AMERICAN ORNITHOLOGISTS' UNION. 1957. Checklist of North American Birds, 5th ed. American Ornithologists' Union, Baltimore, Maryland.
    • (1957) Checklist of North American Birds
  • 6
    • 0003605608 scopus 로고    scopus 로고
    • AMERICAN ORNITHOLOGISTS' UNION, 7th ed. American Ornithologists' Union, Washington, D.C
    • AMERICAN ORNITHOLOGISTS' UNION. 1998. Checklist of North American Birds, 7th ed. American Ornithologists' Union, Washington, D.C.
    • (1998) Checklist of North American Birds
  • 9
    • 9944255059 scopus 로고    scopus 로고
    • Partitioned Bayesian analyses, partition choice, and the phylogenetic relationships of scincid lizards
    • BRANDLEY, M. C., A. SCHMITZ, AND T. W. REEDER. 2005. Partitioned Bayesian analyses, partition choice, and the phylogenetic relationships of scincid lizards. Systematic Biology 54:373-390.
    • (2005) Systematic Biology , vol.54 , pp. 373-390
    • BRANDLEY, M.C.1    SCHMITZ, A.2    REEDER, T.W.3
  • 10
    • 0344961789 scopus 로고    scopus 로고
    • A phylogenetic analysis of the emberizid sparrows based on three mitochondrial genes
    • CARSON, R. J., AND G. S. SPICER. 2003. A phylogenetic analysis of the emberizid sparrows based on three mitochondrial genes. Molecular Phylogenetics and Evolution 29:43-57.
    • (2003) Molecular Phylogenetics and Evolution , vol.29 , pp. 43-57
    • CARSON, R.J.1    SPICER, G.S.2
  • 13
    • 0031224810 scopus 로고    scopus 로고
    • Is congruence between data partitions a reliable predictor of phylogenetic accuracy? Empirically testing an iterative procedure for choosing among phylogenetic methods
    • CUNNINGHAM, C. W. 1997. Is congruence between data partitions a reliable predictor of phylogenetic accuracy? Empirically testing an iterative procedure for choosing among phylogenetic methods. Systematic Biology 46:464-478.
    • (1997) Systematic Biology , vol.46 , pp. 464-478
    • CUNNINGHAM, C.W.1
  • 14
    • 2142706762 scopus 로고
    • Hybridization among the fringillid genera Junco-Zonotrichia and Melospiza
    • DICKERMAN, R. W. 1961. Hybridization among the fringillid genera Junco-Zonotrichia and Melospiza. Auk 78:627-632.
    • (1961) Auk , vol.78 , pp. 627-632
    • DICKERMAN, R.W.1
  • 15
    • 0345416871 scopus 로고
    • On the Sierra Madre Sparrow, Xenospiza baileyi, of Mexico
    • DICKERMAN, R. W., A. R. PHILLIPS, AND D. W. WARNER. 1967. On the Sierra Madre Sparrow, Xenospiza baileyi, of Mexico. Auk 84:49-60.
    • (1967) Auk , vol.84 , pp. 49-60
    • DICKERMAN, R.W.1    PHILLIPS, A.R.2    WARNER, D.W.3
  • 16
    • 0020383192 scopus 로고
    • Problems in distinguishing historical from ecological factors in biogeography
    • ENDLER, J. A. 1982. Problems in distinguishing historical from ecological factors in biogeography. American Zoologist 22:441-452.
    • (1982) American Zoologist , vol.22 , pp. 441-452
    • ENDLER, J.A.1
  • 17
    • 0242487486 scopus 로고    scopus 로고
    • Reliability of Bayesian posterior probabilities and bootstrap frequencies in phylogenetics
    • ERIXON, P., B. SVENNBLAD, T. BRITTON, AND B. OXELMAN. 2003. Reliability of Bayesian posterior probabilities and bootstrap frequencies in phylogenetics. Systematic Biology 52:665-673.
    • (2003) Systematic Biology , vol.52 , pp. 665-673
    • ERIXON, P.1    SVENNBLAD, B.2    BRITTON, T.3    OXELMAN, B.4
  • 19
    • 84959798530 scopus 로고
    • Cases in which parsimony or compatibility methods will be positively misleading
    • FELSENSTEIN, J. 1978. Cases in which parsimony or compatibility methods will be positively misleading. Systematic Biology 27:401-410.
    • (1978) Systematic Biology , vol.27 , pp. 401-410
    • FELSENSTEIN, J.1
  • 20
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: An approach utilizing the bootstrap
    • FELSENSTEIN, J. 1985. Confidence limits on phylogenies: An approach utilizing the bootstrap. Evolution 39:783-791.
    • (1985) Evolution , vol.39 , pp. 783-791
    • FELSENSTEIN, J.1
  • 21
    • 0031157173 scopus 로고    scopus 로고
    • Correlation of functional domains and rates of nucleotide substitution in cytochrome b
    • GRIFFITHS, C. S. 1997. Correlation of functional domains and rates of nucleotide substitution in cytochrome b. Molecular Phylogenetics and Evolution 7:352-365.
    • (1997) Molecular Phylogenetics and Evolution , vol.7 , pp. 352-365
    • GRIFFITHS, C.S.1
  • 22
    • 0030125185 scopus 로고    scopus 로고
    • Molecular phylogenetics and biogeography of tanagers in the genus Ramphocelus (Aves)
    • HACKETT, S. J. 1996. Molecular phylogenetics and biogeography of tanagers in the genus Ramphocelus (Aves). Molecular Phylogenetics and Evolution 5:368-382.
    • (1996) Molecular Phylogenetics and Evolution , vol.5 , pp. 368-382
    • HACKETT, S.J.1
  • 24
    • 12044253190 scopus 로고
    • An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis
    • HILLIS, D. M., AND J. J. BULL. 1993. An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis. Systematic Biology 42:182-192.
    • (1993) Systematic Biology , vol.42 , pp. 182-192
    • HILLIS, D.M.1    BULL, J.J.2
  • 25
    • 11944268967 scopus 로고
    • Performance of phylogenetic methods in simulation
    • HUELSENBECK, J. P. 1995. Performance of phylogenetic methods in simulation. Systematic Biology 44:17-48.
    • (1995) Systematic Biology , vol.44 , pp. 17-48
    • HUELSENBECK, J.P.1
  • 26
    • 0034849408 scopus 로고    scopus 로고
    • MRBAYES: Bayesian inference of phylogenetic trees
    • HUELSENBECK, J. P., AND F. RONQUIST. 2001. MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17:754-755
    • (2001) Bioinformatics , vol.17 , pp. 754-755
    • HUELSENBECK, J.P.1    RONQUIST, F.2
  • 27
    • 0032135217 scopus 로고    scopus 로고
    • Comparing molecular evolution in two mitochondrial protein coding genes (cytochrome b and ND2) in the dabbling ducks (Tribe Anatini)
    • JOHNSON, K. P., AND M. D. SORENSON. 1998. Comparing molecular evolution in two mitochondrial protein coding genes (cytochrome b and ND2) in the dabbling ducks (Tribe Anatini). Molecular Phylogenetics and Evolution 10:82-94.
    • (1998) Molecular Phylogenetics and Evolution , vol.10 , pp. 82-94
    • JOHNSON, K.P.1    SORENSON, M.D.2
  • 28
    • 0034800468 scopus 로고    scopus 로고
    • A cytochrome-b perspective on Passerina bunting relationships
    • KLICKA, J., A. J. FRY, R. M. ZINK, AND C. W. THOMPSON. 2001. A cytochrome-b perspective on Passerina bunting relationships. Auk 118:610-623.
    • (2001) Auk , vol.118 , pp. 610-623
    • KLICKA, J.1    FRY, A.J.2    ZINK, R.M.3    THOMPSON, C.W.4
  • 29
    • 0028177080 scopus 로고
    • A simulation comparison of phylogeny algorithms under equal and unequal evolutionary rates
    • KUHNER, M. K., AND J. FELSENSTEIN. 1994. A simulation comparison of phylogeny algorithms under equal and unequal evolutionary rates. Molecular Biology and Evolution 11:459-468.
    • (1994) Molecular Biology and Evolution , vol.11 , pp. 459-468
    • KUHNER, M.K.1    FELSENSTEIN, J.2
  • 30
    • 3242810318 scopus 로고    scopus 로고
    • MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment
    • KUMAR, S., K. TAMURA, AND M. NEI. 2004. MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment. Briefings in Bioinformatics 5:150-163.
    • (2004) Briefings in Bioinformatics , vol.5 , pp. 150-163
    • KUMAR, S.1    TAMURA, K.2    NEI, M.3
  • 31
    • 0002165947 scopus 로고
    • Phylogenetic frameworks: Towards a firmer foundation for the comparative approach
    • LANYON, S. M. 1993. Phylogenetic frameworks: Towards a firmer foundation for the comparative approach. Biological Journal of the Linnean Society 49:45-61.
    • (1993) Biological Journal of the Linnean Society , vol.49 , pp. 45-61
    • LANYON, S.M.1
  • 32
    • 0037568241 scopus 로고
    • Variations in the Fox Sparrow (Passerella iliaca) with reference to natural history and osteology
    • LINSDALE, J. M. 1928. Variations in the Fox Sparrow (Passerella iliaca) with reference to natural history and osteology. University of California Publications in Zoology 30:251-392.
    • (1928) University of California Publications in Zoology , vol.30 , pp. 251-392
    • LINSDALE, J.M.1
  • 34
    • 0345513642 scopus 로고
    • The relationships of sparrows in the genera Ammodramus, Passerherbulus, and Ammospiza with a description of a hybrid Le Conte's x Sharp-tailed Sparrrow
    • MURRAY, B. G., JR. 1968. The relationships of sparrows in the genera Ammodramus, Passerherbulus, and Ammospiza with a description of a hybrid Le Conte's x Sharp-tailed Sparrrow. Auk 85:586-593.
    • (1968) Auk , vol.85 , pp. 586-593
    • MURRAY JR., B.G.1
  • 35
    • 34249110746 scopus 로고
    • Notes on the nomenclature of certain genera of birds
    • OBERHOLSER, H. C. 1905. Notes on the nomenclature of certain genera of birds. Smithsonian Miscellaneous Collection 48:59-68.
    • (1905) Smithsonian Miscellaneous Collection , vol.48 , pp. 59-68
    • OBERHOLSER, H.C.1
  • 36
    • 34248999540 scopus 로고
    • Notes on the fringilline genus Passerherbulus and its newest allies
    • OBERHOLSER, H. C. 1917. Notes on the fringilline genus Passerherbulus and its newest allies. Ohio Journal of Science 17:332-336.
    • (1917) Ohio Journal of Science , vol.17 , pp. 332-336
    • OBERHOLSER, H.C.1
  • 37
    • 0031967286 scopus 로고    scopus 로고
    • Systematic relationships among the emberizid sparrows
    • PATTEN, M. A., AND M. FUGATE. 1998. Systematic relationships among the emberizid sparrows. Auk 115:412-424.
    • (1998) Auk , vol.115 , pp. 412-424
    • PATTEN, M.A.1    FUGATE, M.2
  • 38
    • 0345513643 scopus 로고
    • Generic limits of Zonotrichia
    • PAYNTER, R. A., JR. 1964. Generic limits of Zonotrichia. Condor 66:277-281.
    • (1964) Condor , vol.66 , pp. 277-281
    • PAYNTER JR., R.A.1
  • 39
    • 85018008542 scopus 로고    scopus 로고
    • PAYNTER, R. A., JR., AND R. W. STORER. 1970. Subfamily Emberizinae. Pages 3-214 in Check-list of Birds of the World, 13 (R. A. Paynter, Jr., Ed.). Museum of Comparative Zoology, Harvard University, Cambridge, Massachusetts.
    • PAYNTER, R. A., JR., AND R. W. STORER. 1970. Subfamily Emberizinae. Pages 3-214 in Check-list of Birds of the World, vol. 13 (R. A. Paynter, Jr., Ed.). Museum of Comparative Zoology, Harvard University, Cambridge, Massachusetts.
  • 40
    • 85018001735 scopus 로고    scopus 로고
    • PHILLIPS, A. R., J. T. MARSHALL, JR., AND G. MONSON. 1964. The Birds of Arizona. University of Arizona Press, Tucson, Arizona.
    • PHILLIPS, A. R., J. T. MARSHALL, JR., AND G. MONSON. 1964. The Birds of Arizona. University of Arizona Press, Tucson, Arizona.
  • 41
    • 33646270463 scopus 로고
    • Taxonomy and distribution of the Mexican Sparrow Xenospiza baileyi
    • PITELKA, F. A. 1947. Taxonomy and distribution of the Mexican Sparrow Xenospiza baileyi. Condor 49:199-203.
    • (1947) Condor , vol.49 , pp. 199-203
    • PITELKA, F.A.1
  • 42
    • 9644301241 scopus 로고    scopus 로고
    • Model selection and model averaging in phylogenetics: Advantages of Akaike Information Criterion and Bayesian approaches over likelihood ratio tests
    • POSADA, D., AND T. R. BUCKLEY. 2004. Model selection and model averaging in phylogenetics: Advantages of Akaike Information Criterion and Bayesian approaches over likelihood ratio tests. Systematic Biology 53:793-808.
    • (2004) Systematic Biology , vol.53 , pp. 793-808
    • POSADA, D.1    BUCKLEY, T.R.2
  • 43
    • 0031773680 scopus 로고    scopus 로고
    • MODELTEST: Testing the model of DNA substitution
    • POSADA, D., AND K. A. CRANDALL. 1998. MODELTEST: Testing the model of DNA substitution. Bioinformatics 14:817-818.
    • (1998) Bioinformatics , vol.14 , pp. 817-818
    • POSADA, D.1    CRANDALL, K.A.2
  • 44
    • 0016428644 scopus 로고
    • Slow evolutionary loss of the potential for interspecific hybridization in birds: A manifestation of slow regulatory evolution
    • PRAGER, E. M., AND A. C. WILSON. 1975. Slow evolutionary loss of the potential for interspecific hybridization in birds: A manifestation of slow regulatory evolution. Proceedings of the National Academy of Sciences USA 72:200-204.
    • (1975) Proceedings of the National Academy of Sciences USA , vol.72 , pp. 200-204
    • PRAGER, E.M.1    WILSON, A.C.2
  • 45
    • 0029818407 scopus 로고    scopus 로고
    • Probability distribution of molecular evolutionary trees: A new method of phylogenetic inference
    • RANNALA, B., AND Z. YANG. 1996. Probability distribution of molecular evolutionary trees: A new method of phylogenetic inference. Journal of Molecular Evolution 43:304-311.
    • (1996) Journal of Molecular Evolution , vol.43 , pp. 304-311
    • RANNALA, B.1    YANG, Z.2
  • 46
    • 0003219405 scopus 로고
    • The Birds of North and Middle America
    • part 1. Family Fringillidae, The finches
    • RIDGWAY, R. 1901. The Birds of North and Middle America, part 1. Family Fringillidae - The finches. United States National Museum Bulletin, no. 50.
    • (1901) United States National Museum Bulletin , vol.50
    • RIDGWAY, R.1
  • 47
    • 0002729333 scopus 로고
    • Skeletal analysis of the Ammodramus-Ammospiza grassland sparrow complex: A numerical taxonomic study
    • ROBINS, J. D., AND G. D. SCHNELL. 1971. Skeletal analysis of the Ammodramus-Ammospiza grassland sparrow complex: A numerical taxonomic study. Auk 88:567-590.
    • (1971) Auk , vol.88 , pp. 567-590
    • ROBINS, J.D.1    SCHNELL, G.D.2
  • 48
    • 85018004979 scopus 로고    scopus 로고
    • SHORT, L. L., JR., AND S. W. SIMON. 1965. Additional hybrids of the Slate-colored Junco and the White-throated Sparrow. Condor 67:438-442.
    • SHORT, L. L., JR., AND S. W. SIMON. 1965. Additional hybrids of the Slate-colored Junco and the White-throated Sparrow. Condor 67:438-442.
  • 50
    • 0027951531 scopus 로고
    • Rooting molecular trees: Problems and strategies
    • SMITH, A. B. 1994. Rooting molecular trees: Problems and strategies. Biological Journal of Linnean Society 51:279-292.
    • (1994) Biological Journal of Linnean Society , vol.51 , pp. 279-292
    • SMITH, A.B.1
  • 52
    • 34249040309 scopus 로고
    • Some changes in the current generic names of North American birds
    • STONE, W. 1907. Some changes in the current generic names of North American birds. Auk 24:189-199.
    • (1907) Auk , vol.24 , pp. 189-199
    • STONE, W.1
  • 54
    • 85018015870 scopus 로고    scopus 로고
    • SWAINSON, W. 1827. A synopsis of birds discovered by W. Bullock, F. L. S. and H. S., and Mr. William Bullock, Jr. Philosophical Magazine (new series) 5:433-442.
    • SWAINSON, W. 1827. A synopsis of birds discovered by W. Bullock, F. L. S. and H. S., and Mr. William Bullock, Jr. Philosophical Magazine (new series) 5:433-442.
  • 55
    • 85017994803 scopus 로고    scopus 로고
    • SWOFFORD, D. L. 2000. PAUP*: Phylogenetic Analysis Using Parsimony *and Other Methods, version 4.0b4a. Sinauer Associates, Sunderland, Massachusetts
    • SWOFFORD, D. L. 2000. PAUP*: Phylogenetic Analysis Using Parsimony (*and Other Methods), version 4.0b4a. Sinauer Associates, Sunderland, Massachusetts.
  • 56
    • 0001336205 scopus 로고    scopus 로고
    • Phylogenetic inference
    • D. M. Hillis, C. Moritz, and B. K. Mable, Eds, Sinauer, Sunderland, Massachusetts
    • SWOFFORD, D. L., G. J. OLSEN, P. J. WADELL, AND D. M. HILLIS. 1996. Phylogenetic inference. Pages 407-514 in Molecular Systematics (D. M. Hillis, C. Moritz, and B. K. Mable, Eds.). Sinauer, Sunderland, Massachusetts.
    • (1996) Molecular Systematics , pp. 407-514
    • SWOFFORD, D.L.1    OLSEN, G.J.2    WADELL, P.J.3    HILLIS, D.M.4
  • 57
    • 84989446394 scopus 로고
    • Nucleic acid sequence phylogeny and random outgroups
    • WHEELER, W. C. 1990. Nucleic acid sequence phylogeny and random outgroups. Cladistics 6:363-368.
    • (1990) Cladistics , vol.6 , pp. 363-368
    • WHEELER, W.C.1
  • 58
    • 0036431235 scopus 로고    scopus 로고
    • Phylogenetic relationships of the dwarf boas and a comparison of Bayesian and bootstrap measures of phylogenetic support
    • WILCOX T. P., D. J. ZWICKL, T. A. HEATH, AND D. M. HILLIS. 2002. Phylogenetic relationships of the dwarf boas and a comparison of Bayesian and bootstrap measures of phylogenetic support. Molecular Phylogenetics and Evolution 25:361-371.
    • (2002) Molecular Phylogenetics and Evolution , vol.25 , pp. 361-371
    • WILCOX, T.P.1    ZWICKL, D.J.2    HEATH, T.A.3    HILLIS, D.M.4
  • 59
    • 0030451420 scopus 로고    scopus 로고
    • Among-site rate variation and its impact on phylogenetic analyses
    • YANG, Z. 1996. Among-site rate variation and its impact on phylogenetic analyses. Trends in Ecology and Evolution 11:367-372.
    • (1996) Trends in Ecology and Evolution , vol.11 , pp. 367-372
    • YANG, Z.1
  • 60
    • 0000700760 scopus 로고
    • Patterns of mitochondrial DNA and allozyme evolution in the avian genus Ammodramus
    • ZINK, R. M., AND J. C. AVISE. 1990. Patterns of mitochondrial DNA and allozyme evolution in the avian genus Ammodramus. Systematic Zoology 39:148-161.
    • (1990) Systematic Zoology , vol.39 , pp. 148-161
    • ZINK, R.M.1    AVISE, J.C.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.