Quaranfil, Johnston Atoll, and Lake Chad viruses are novel members of the family Orthomyxoviridae

Journal of Virology

Volumn 83, Issue 22, 2009, Pages 11599-11606

  Presti, Rachel M ^a   Zhao, Guoyan ^a   Beatty, Wandy L ^a   Mihindukulasuriya, Kathie A ^a   Travassos Da Rosa, Amelia P A ^b   Popov, Vsevolod L ^b   Tesh, Robert B ^b   Virgin, Herbert W ^a   Wang, David ^a  

^a WASHINGTON UNIVERSITY SCHOOL OF MEDICINE   (United States)

^b University of Texas Medical Branch School of Medicine   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID; HEMAGGLUTININ; VIRUS RNA;

ANIMAL CELL; ARTICLE; CROSS REACTION; EMBRYO; GENE SEQUENCE; HIGH THROUGHPUT SCREENING; HUMAN; HUMAN CELL; JOHNSTON ATOLL VIRUS; LAKE CHAD VIRUS; MOLECULAR PHYLOGENY; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; ORTHOMYXOVIRUS; PREDICTION; PRIORITY JOURNAL; PROMOTER REGION; QUARANFIL VIRUS; STRUCTURAL GENE; VIRUS GENOME; VIRUS IDENTIFICATION;

AMINO ACID SEQUENCE; ANIMALS; ARBOVIRUSES; BASE SEQUENCE; CELL LINE; CERCOPITHECUS AETHIOPS; CRYOELECTRON MICROSCOPY; HUMANS; MICE; MICE, INBRED C57BL; MICROSCOPY, ELECTRON, TRANSMISSION; MOLECULAR SEQUENCE DATA; ORTHOMYXOVIRIDAE; PHYLOGENY; SEQUENCE ALIGNMENT; VERO CELLS;

ANIMALIA; ARBOVIRUS; ARTHROPODA; AVES; IXODIDA; ORTHOMYXOVIRIDAE; UNCLASSIFIED VIRUSES;

EID: 70350333419     PISSN: 0022538X     EISSN: None     Source Type: Journal    
DOI: 10.1128/JVI.00677-09     Document Type: Article

References (38)

1. Al-Khalifa, M. S., F. M. Diab, and G. M. Khalil. 2007. Man-threatening viruses isolated from ticks in Saudi Arabia. Saudi Med. J. 28:1864-1867.
2. Altschul, S. F., T. L. Madden, A. A. Schaffer, J. Zhang, Z. Zhang, W. Miller, and D. J. Lipman. 1997. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25:3389-3402.
3. Austin, F. J. 1978. Johnston Atoll virus (Quaranfil group) from Ornithodoros capensis (Ixodoidea: Argasidae) infesting a gannet colony in New Zealand. Am. J. Trop. Med. Hyg. 27:1045-1048.
4. Baskerville, A., and G. Lloyd. 1976. The pathogenesis and pathology of experimental Quaranfil virus infection. Br. J. Exp. Pathol. 57:152-156.
5. Beaty, B. J., C. H. Calisher, and R. E. Shope. 1989. Arboviruses, p. 797-855. In N. J. Schmidt and R. W. Emmons (ed.), Diagnostic procedures for viral, rickettsial, and chlamydial infections. American Public Health Association, Washington, DC.
6. Biswas, S. K., and D. P. Nayak. 1996. Influenza virus polymerase basic protein 1 interacts with influenza virus polymerase basic protein 2 at multiple sites. J. Virol. 70:6716-6722. (Pubitemid 26307378)
7. Booth, T. F., C. R. Davies, L. D. Jones, D. Staunton, and P. A. Nuttall. 1989. Anatomical basis of Thogoto virus infection in BHK cell culture and in the ixodid tick vector, Rhipicephalus appendiculatus. J. Gen. Virol. 70:1093-1104.
8. Butenko, A. M., E. V. Leschinskaya, I. V. Semashko, M. A. Donets, L. I. Martiyanova, I. N. Martynenko, S. G. Rubin, and M. P. Chumakov. 1987. Dhori virus, a causative agent of human disease: 5 cases of laboratory infection. Voprosy Virusologii 1987:724-729.
9. Chenna, R., H. Sugawara, T. Koike, R. Lopez, T. J. Gibson, D. G. Higgins, and J. D. Thompson. 2003. Multiple sequence alignment with the Clustal series of programs. Nucleic Acids Res. 31:3497-3500. (Pubitemid 37442184)
10. Clarke, D. H., and J. Casals. 1958. Techniques for hemagglutination and hemagglutination-inhibition with arthropod-borne viruses. Am. J. Trop. Med. Hyg. 7:561-573.
11. Clifford, C. M., L. A. Thomas, L. E. Hughes, G. M. Kohls, and C. B. Philip. 1968. Identification and comparison of two viruses isolated from ticks of the genus Ornithodoros. Am. J. Trop. Med. Hyg. 17:881-885.
12. Converse, J. D., and M. I. Moussa. 1982. Quaranfil virus from Hyalomma dromedarii (Acari: Ixodoidea) collected in Kuwait, Iraq and Yemen. J. Med. Entomol. 19:209-210.
13. Da Silva, E. V., A. P. Da Rosa, M. R. Nunes, J. A. Diniz, R. B. Tesh, A. C. Cruz, C. M. Vieira, and P. F. Vasconcelos. 2005. Araguari virus, a new member of the family Orthomyxoviridae: serologic, ultrastructural, and molecular characterization. Am. J. Trop. Med. Hyg. 73:1050-1058.
14. Desselberger, U., V. R. Racaniello, J. J. Zazra, and P. Palese. 1980. The 3′ and 5′-terminal sequences of influenza A, B and C virus RNA segments are highly conserved and show partial inverted complementarity. Gene. 8:315-328. (Pubitemid 10099893)
15. Guindon, S., and O. Gascuel. 2003. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst. Biol. 52:696-704.
16. Hagen, M., L. Tiley, T. D. Chung, and M. Krystal. 1995. The role of template-primer interactions in cleavage and initiation by the influenza virus polymerase. J. Gen. Virol. 76:603-611.
17. Hagmaier, K., S. Jennings, J. Buse, F. Weber, and G. Kochs. 2003. Novel gene product of Thogoto virus segment 6 codes for an interferon antagonist. J. Virol. 77:2747-2752. (Pubitemid 36222800)
18. Hulo, N., A. Bairoch, V. Bulliard, L. Cerutti, B. A. Cuche, E. de Castro, C. Lachaize, P. S. Langendijk-Genevaux, and C. J. Sigrist. 2008. The 20 years of PROSITE. Nucleic Acids Res. 36:D245-D249.
19. Hulo, N., A. Bairoch, V. Bulliard, L. Cerutti, E. de Castro, P. S. Langendijk-Genevaux, M. Pagni, and C. J. Sigrist. 2006. The PROSITE database. Nucleic. Acids Res. 34:D227-D230.
20. Kemp, G. E., V. H. Lee, and D. L. Moore. 1975. Isolation of Nyamanini and Quaranfil viruses from Argas (Persicargas) arboreus ticks in Nigeria. J. Med. Entomol. 12:535-537.
21. Lamb, R. A., and R. M. Krug. 2001. Orthomyxoviridae, p. 1487-1532. In D. M. Knipe and P. M. Howley (ed.), Fields virology. Lippincott Williams & Wilkins, Philadelphia, PA.
22. Lin, D. A., S. Roychoudhury, P. Palese, W. C. Clay, and F. J. Fuller. 1991. Evolutionary relatedness of the predicted gene-product of RNA segment-2 of the tick-borne Dhori virus and the Pb1 polymerase gene of influenza-viruses. Virology 182:1-7.
23. Marchler-Bauer, A., J. B. Anderson, P. F. Cherukuri, C. Weese-Scott, L. Y. Geer, M. Gwadz, S. He, D. I. Hurwitz, J. D. Jackson, Z. Ke, C. J. Lanczycki, C. A. Liebert, C. Liu, F. Lu, G. H. Marchler, M. Mullokandov, B. A. Shoemaker, V. Simonyan, J. S. Song, P. A. Thiessen, R. A. Yamashita, J. J. Yin, D. Zhang, and S. H. Bryant. 2005. CDD: a Conserved Domain Database for protein classification. Nucleic Acids Res. 33:D192-D196. (Pubitemid 40207858)
24. Marchler-Bauer, A., J. B. Anderson, F. Chitsaz, M. K. Derbyshire, C. Weese-Scott, J. H. Fong, L. Y. Geer, R. C. Geer, N. R. Gonzales, M. Gwadz, S. He, D. I. Hurwitz, J. D. Jackson, Z. Ke, C. J. Lanczycki, C. A. Liebert, C. Liu, F. Lu, S. Lu, G. H. Marchler, M. Mullokandov, J. S. Song, A. Tasneem, N. Thanki, R. A. Yamashita, D. Zhang, N. Zhang, and S. H. Bryant. 2009. CDD: specific functional annotation with the Conserved Domain Database. Nucleic Acids Res. 37:D205-D210.
25. McBeath, A. J., B. Collet, R. Paley, S. Duraffour, V. Aspehaug, E. Biering, C. J. Secombes, and M. Snow. 2006. Identification of an interferon antagonist protein encoded by segment 7 of infectious salmon anaemia virus. Virus. Res. 115:176-184.
26. Morse, M. A., A. C. Marriott, and P. A. Nuttall. 1992. The glycoprotein of Thogoto virus (a tick-borne orthomyxo-like virus) is related to the baculovirus glycoprotein GP64. Virology 186:640-646.
27. Pollock, J. L., R. M. Presti, S. Paetzold, and H. W. Virgin. 1997. Latent murine cytomegalovirus infection in macrophages. Virology 227:168-179. (Pubitemid 27241066)
28. Reed, L. J., and H. Muench. 1938. A simple method of estimating fifty per cent endpoints. Am. J. Hyg. 27:493-497.
29. Sang, R., C. Onyango, J. Gachoya, E. Mabinda, S. Konongoi, V. Ofula, L. Dunster, F. Okoth, R. Coldren, R. Tesh, A. T. da Rosa, S. Finkbeiner, D. Wang, M. Crabtree, and B. Miller. 2006. Tickborne arbovirus surveillance in market livestock, Nairobi, Kenya. Emerg. Infect. Dis. 12:1074-1080.
30. Sureau, P., and J. M. Klein. 1980. Arboviruses in Iran. Med. Trop. (Mars.) 40:549-554.
31. Swofford, D. L. 2000. PAUP*. Phylogenetic analysis using parsimony (*and other methods), v. 4.0. Sinauer Associates, Sunderland, MA.
32. Taylor, R. M., H. S. Hurlbut, T. H. Work, J. R. Kingston, and H. Hoogstraal. 1966. Arboviruses isolated from Argas ticks in Egypt: Quaranfil, Chenuda, and Nyamanini. Am. J. Trop. Med. Hyg. 15:76-86.
33. Tiley, L. S., M. Hagen, J. T. Matthews, and M. Krystal. 1994. Sequence-specific binding of the influenza virus RNA polymerase to sequences located at the 5′ ends of the viral RNAs. J. Virol. 68:5108-5116. (Pubitemid 24226579)
34. Wang, D., L. Coscoy, M. Zylberberg, P. C. Avila, H. A. Boushey, D. Ganem, and J. L. DeRisi. 2002. Microarray-based detection and genotyping of viral pathogens. Proc. Natl. Acad. Sci. USA 99:15687-15692.
35. Weber, F., O. Haller, and G. Kochs. 1996. Nucleoprotein viral RNA and mRNA of Thogoto virus: a novel "cap-stealing" mechanism in tick-borne orthomyxoviruses? J. Virol. 70:8361-8367.
36. Weber, F., O. Haller, and G. Kochs. 1997. Conserved vRNA end sequences of Thogoto-orthomyxovirus suggest a new panhandle structure. Arch. Virol. 142:1029-1033.
37. Xu, F., D. Liu, M. R. Nunes, A. P. Da Rosa, R. B. Tesh, and S. Y. Xiao. 2007. Antigenic and genetic relationships among Rift Valley fever virus and other selected members of the genus Phlebovirus (Bunyaviridae). Am. J. Trop. Med. Hyg. 76:1194-1200.
38. Zeller, H. G., N. Karabatsos, C. H. Calisher, J. P. Digoutte, F. A. Murphy, and R. E. Shope. 1989. Electron microscopy and antigenic studies of uncharacterized viruses. I. Evidence suggesting the placement of viruses in families Arenaviridae, Paramyxoviridae, or Poxviridae. Arch. Virol. 108:191-209.