Nucleoprotein viral RNA and mRNA of Thogoto virus: A novel 'cap- stealing' mechanism in tick-borne orthomyxoviruses?

Journal of Virology

Volumn 70, Issue 12, 1996, Pages 8361-8367

  Weber, Friedemann ^a   Haller, Otto ^a   Kochs, Georg ^a  

^a UNIVERSITY OF FREIBURG   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

CAPPED RNA; VIRUS NUCLEOPROTEIN; VIRUS RNA;

AMINO ACID SEQUENCE; ARTICLE; GENOME; MOLECULAR CLONING; NONHUMAN; ORTHOMYXOVIRUS; PRIORITY JOURNAL; RNA SYNTHESIS; RNA TRANSCRIPTION; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY;

EID: 0029956765     PISSN: 0022538X     EISSN: None     Source Type: Journal    
DOI: 10.1128/jvi.70.12.8361-8367.1996     Document Type: Article

References (54)

1. Albanese, M., C. Bruno-Smiraglia, G. Di Cuonzo, A. Lavagnino, and S. Srihongse. 1972. Isolation of Thogoto virus from Rhipicephalus bursa ticks in western Sicily. Acta Virol. 267:267.
2. Albo, C., A. Valencia, and A. Portela. 1995. Identification of an RNA binding region within the N-terminal third of the influenza A virus nucleoprotein. J. Virol. 69:3799-3806.
3. Altschul, S. F., W. Gish, W. Miller, E. W. Myers, and D. J. Lipman. 1990. Basic local alignment search tool. J. Mol. Biol. 215:403-410.
4. Ausubel, F., R. Brent, R. E. Kingston, D. D. Moore, J. S. Seidman, J. A. Smith, and K. Strahl (ed.). 1992. Current protocols in molecular biology. John Wiley & Sons, Inc., Boston.
5. Bochnig, P., R. Reuter, P. Bringmann, and R, Lührmann. 1987. A monoclonal antibody against 2 2 7 trimethylguanosinc that reacts with intact class U small nuclear ribonucleoproteins as well as with 7 methylguanosinecapped RNA. Eur. J. Biochem. 168:461-467.
6. Burd, C. G., and G. Dreyfuss. 1994. Conserved structures and diversity of functions of RNA-binding proteins. Science 265:615-621.
7. Caton, A. J., and J. S. Robertson. 1980. Structure of the host-derived sequences present at the 5′ ends of influenza virus mRNA. Nucleic Acids Res. 8:2591-2603.
8. Chomczynski, P., and N. Sacchi. 1987. Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction. Anal. Biochem. 162:156-159.
9. Clerx, J. P. M., F. Fuller, and D. H. Bishop. 1983. Tick-borne viruses structurally similar to orthomyxoviruses. Virology 127:205-219.
10. Davey, J., N. J. Dimmock, and A. Colman. 1985. Identification of the sequence responsible for the nuclear accumulation of the influenza virus nucleoprotein in Xenopus oocytes, Cell 40:667-675.
11. Desselsberger, U., V. R. Racaniello, J. J. Zarza, and P. Palese, 1980. The 3′ and 5′ terminal sequences of influenza A, B and C virus RNA segments are highly conserved and show partial inverted complementarity. Gene 8:315-328.
12. Dhar, R., R. M. Chanock, and C.-J. Lai. 1980. Nonviral oligonucleotides at the 5′ terminus of cytoplasmic influenza viral mRNA deduced from cloned complete genomic sequences. Cell 21:495-500.
13. Dreiding, P., P. Staeheli, and O. Haller. 1985. Interfcron-induced protein Mx accumulates in nuclei of mouse cells expressing resistance to influenza viruses. Virology 140:192-196.
14. Freedman-Faulstich, E. Z., and J. F. Fuller. 1990. Nucleotide sequence of the tick-borne, orthomyxo-like Dhori/Indian/1313/61 virus envelope gene. Virology 175:10-18.
15. Frohmann, M. A., M. K. Dush, and G. R. Martin. 1988. Rapid production of full-length cDNAs from rare transcripts: amplification using a single gene-specific oligonucleotide primer. Proc. Natl. Acad. Sci. USA 85:8998-9002.
16. Fuller, F. J., E. Z. Freedman-Faulstich, and J. A. Barnes. 1987. Complete nucleotide sequence of the tick-borne, orthomyxo-like Dhori/Indian/1313/61 virus nucleoprotein gene. Virology 160:81-87.
17. Garcin, D., and D. Kolakofsky. 1990. A novel mechanism for the initiation of Tacaribe arenavirus genome replication. J. Virol. 64:6196-6203.
18. Garcin, D., M. Lezzi, M. Dobbs, R. M. Elliott, C. Schmaljohn, C. Y. Kang, and D. Kolakofsky. 1995. The 5′ ends of Hantaan virus (Bunyaviridae) RNAs suggest a prime-and-realign mechanism for the initiation of RNA synthesis. J. Virol. 69:5754-5762.
19. Gubler, U., and B. J. Hoffman. 1983. A simple and very efficient method for generating cDNA libraries. Gene 25:263.
20. Haller, O., M. Frese, D. Rost, P. Nuttall, and G. Kochs. 1995. Tick-borne Thogoto virus infection in mice is inhibited by the orthomyxovirus resistance gene product Mx1. J. Virol. 69:2596-2601.
21. Hein, J. 1990. Unified approach to alignment and phytogenies. Methods Enzymol. 183:626-645.
22. Hirzmann, J., D. Luo, J. Hahnen, and G. Hobom. 1993. Determination of messenger RNA 5′-ends by reverse transcription of the cap structure. Nucleic Acids Res. 21:3597-3598.
23. Holbrook, S. R., C. Cheong, I. Tinoco, and S. H. Kim. 1991. Crystal structure of an RNA double helix incorporating a track of non-Watson-Crick base pairs. Nature (London) 353:579-581.
24. Huiet, L., P. A. Feldstein, J. H. Tsai, and B. W. Falk. 1993. The maize stripe virus major noncapsid protein messenger RNA transcripts contain heterogeneous leader sequences at their 5′ termini. Virology 197:808-812.
25. Kawakami, K., K. Mizumoto, and A. Ishihama. 1983. RNA polymerase of influenza virus. IV. Catalytic properties of the capped RNA endonuclease associated with the RNA polymerase. Nucleic Acids Res. 11:3637-3649.
26. Kawasaki, E. S., S. S. Clark, M. Y. Coyne, S. D. Smith, R. Champlin, O. N. Witte, and F. P. McCormick. 1988. Diagnosis of chronic mycloid and acute lytnphocytic leukemias by detection of leukemia-specific mRNA sequences amplified in vitro. Proc. Natl. Actid. Sci. USA 85:5698-5702.
27. Kobayashi, M., T. Toyoda, D. M. Adyshev, Y. Azuma, and A. Ishihama. 1994. Molecular dissection of influenza virus nucleoprotein: deletion mapping of the RNA binding domain. J. Virol. 68:8433-8436.
28. Kozak, M. 1987. An analysis of 5′-noncoding sequences from 699 vertebrate messenger RNAs. Nucleic Acids Res. 15:8125-8148.
29. Krug, R. M., F. Alonso-Caplen, I. Julkunen, and M. G. Katze. 1989. Expression and replication of the influenza virus genome, p. 89-152. In R. Krug (ed.). The influenza viruses. Plenum Press, New York.
30. Krug, R. M., B. B. Broni, and M. Bouloy. 1979. Are the 5′ ends of influenza viral mRNAs synthesized in vivo donated by host mRNAs? Cell 18:329-334.
31. Lamb, R. A. 1989. Genes and proteins of the influenza viruses, p. 1-88. In R. M. Krug (ed.). The influenza viruses. Plenum Press, Now York.
32. Lamb, R. A., and C. M. Horvartlh. 1991. Diversity of coding strategies in influenza viruses. Trends Genet. 7:261-266.
33. Leahy, M., F. Weber, and J. T. Dessens. Unpublished data.
34. Londo, D. R., A. R. Davis, and D. P. Nayak. 1983. Complete nucleotide sequence of the nucleoprotcin gene of influenza B virus. J. Virol. 47:642-648.
35. Mandl, C. W., F. X. Heinz, E. Puchhammer-Stoeckl, and C. Kunz. 1991. Sequencing the termini of capped viral RNA by 5′-3′ ligation and PCR. BioTechniqucs 10:485-485.
36. Mark, G. E., J. M. Taylor, B. Broni, and R. M. Krug. 1979. Nuclear accumulation of influenza viral RNA and the effects of cycloheximide actinomycin D and alpha-amanitin. J. Virol. 29:744-752.
37. Meyer, B. J., and P. J. Southern. 1993. Concurrent sequence analysis of 5′ and 3′ RNA termini by intramolecular circularization reveals 5′ nontemplated bases and 3′ terminal heterogeneity for lymphotic choriomeningitis virus mRNAs. J. Virol. 67:2621-2627.
38. Morse, M. A., A. C. Marriott, and P. A. Nuttall. 1992. The glycoprotein of Thogoto virus (a tick-borne orthomyxo-like virus) is related to the baculo-virus glycoprotein gp64. Virology 186:640-646.
39. Murphy, F. A., C. M. Fauquet, D. H. L. Bishop, S. A. Ghabrial, A. W. Jarvis, G. P. Martelli, M. A. Mayo, and M. D. Summers. 1995. Virus taxonomy. Springer-Verlag. Vienna.
40. Nakada, S., R. S. Creager, M. Krystal, and P. Palese. 1984. Complete nucleotide sequence of the influenza C/California/78 virus nucleoprotein gene. Virus Res. 1:433-441.
41. Nuttall, P. A., M. A. Morse, L. D. Jones, and A. Portela. 1995. Orthoacari-viruses. In A. J. Gibbs and C. H. Calisher (ed.). Molecular evolution of viruses, p. 416-425. Cambridge University Press, Cambridge.
42. Plotch, S. J., M. Bouloy, I. Ulmanen, and R. Krug. 1981. A unique cap(m7GpppXm)-dependent influenza virion endonuclease cleaves capped RNAs to generate the primers that initiate viral RNA transcription. Cell 23:847-858.
43. Polyak, S. J., S. Zheng, and D. G. Harnish. 1995. 5′ termini of Pichinde arenavirus S RNAs and mRNAs contain nontemplated nucleotides. J. Virol. 69:3211-3215.
44. Portela, A. Personal communication.
45. Portela, A., L. D. Jones, and P. Nuttall, 1992, Identification of viral structural polypeptides of Thogolo virus (a tick-borne orthomyxo-like virus) and functions associated with the glycoprotein. J. Gen. Virol. 73:2823-2830.
46. Rott, R., and C. Scholtissek. 1970. Specific inhibition of influenza replication by alpha-amanitin. Nature (London) 228:56.
47. Sanger, F., S. Nicklen, and A. R. Coulson. 1977. DNA sequencing with chain-terminating inhibitors. Proc. Natl. Acad. Sci. USA 74:5463-5467.
48. Shaw, M. W., and R. A. Lamb. 1984. A specific subset of host-cell mRNAs prime influenza virus mRNA synthesis. Virus Res. 1:455-467.
49. Siebler, J., O. Haller, and G. Kochs. 1996. Thogoto and Dhori virus replication is blocked by inhibitors of cellular polymerasc II activity but does not cause shutoff of host cell protein synthesis. Arch. Virol. 141:1587-1594.
50. Staunton, D., P. A. Nuttall, and D. H. L. Bishop. 1989. Sequence analyses of Thogolo viral RNA segment 3: evidence for a distant relationship between an arbovirus and members of the Orthomyxoviridae. J. Gen. Virol. 70:2811-2817.
51. Ulmanen, I., B. A. Broni, and R. M. Krug. 1981. Role of two of the influenza virus core P proteins in recognizing cap 1 structures (m7GpppNm) on RNAs and in initiating viral RNA transcription. Proc. Natl. Acad. Sci. USA 78: 7355-7359.
52. Weber, F., G. Kochs, and O. Haller. Unpublished data.
53. Webster, R. G., W. J. Bean, O. T. German, T. M, Chambers, and Y. Kawaoka. 1992. Evolution and ecology of influenza A viruses. Microbiol. Rev. 56:152-179.
54. Winter, G., and S. Fields. 1981. The structure of the gene encoding the nucleoprotein of human influenza virus A/PR/8/34. Virology 114:423-428.