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Volumn 581, Issue 27, 2007, Pages 5282-5288

Adding pyrrolysine to the Escherichia coli genetic code

Author keywords

Methanosarcina barkeri; PYLIS; Pyrrolysine; Selenocysteine; Stop codon suppression; Translation termination

Indexed keywords

AMINO ACID TRANSFER RNA LIGASE; BETA GALACTOSIDASE; LYSINE DERIVATIVE; N EPSILON CYCLOPENTYLOXYCARBONYL LEVO LYSINE; ORNITHINE; PYRROLYSINE; TRANSFER RNA; UNCLASSIFIED DRUG;

EID: 35548939370     PISSN: 00145793     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.febslet.2007.10.022     Document Type: Article
Times cited : (50)

References (34)
  • 2
    • 13444266438 scopus 로고    scopus 로고
    • Complete set of orthogonal 21st aminoacyl-tRNA synthetase-amber, ochre and opal suppressor tRNA pairs: concomitant suppression of three different termination codons in an mRNA in mammalian cells
    • Köhrer C., Sullivan E.L., and RajBhandary U.L. Complete set of orthogonal 21st aminoacyl-tRNA synthetase-amber, ochre and opal suppressor tRNA pairs: concomitant suppression of three different termination codons in an mRNA in mammalian cells. Nucleic Acid Res. 32 (2004) 6200-6211
    • (2004) Nucleic Acid Res. , vol.32 , pp. 6200-6211
    • Köhrer, C.1    Sullivan, E.L.2    RajBhandary, U.L.3
  • 3
    • 4344682733 scopus 로고    scopus 로고
    • Selenocysteine
    • Ibba M., Francklyn C., and Cusack S. (Eds), Landes Bioscience, Georgetown, TX
    • Böck A., Thanbichler M., Rother M., and Resch A. Selenocysteine. In: Ibba M., Francklyn C., and Cusack S. (Eds). The Aminoacyl-tRNA Synthetases (2004), Landes Bioscience, Georgetown, TX 320-327
    • (2004) The Aminoacyl-tRNA Synthetases , pp. 320-327
    • Böck, A.1    Thanbichler, M.2    Rother, M.3    Resch, A.4
  • 4
    • 27844438536 scopus 로고    scopus 로고
    • The direct genetic coding of pyrrolysine
    • Krzycki J.A. The direct genetic coding of pyrrolysine. Curr. Opin. Microbiol. 8 (2005) 706-712
    • (2005) Curr. Opin. Microbiol. , vol.8 , pp. 706-712
    • Krzycki, J.A.1
  • 5
    • 0037166006 scopus 로고    scopus 로고
    • Pyrrolysine encoded by UAG in archaea: charging of a UAG-decoding specialized tRNA
    • Srinivasan G., James C.M., and Krzycki J.A. Pyrrolysine encoded by UAG in archaea: charging of a UAG-decoding specialized tRNA. Science 296 (2002) 1459-1462
    • (2002) Science , vol.296 , pp. 1459-1462
    • Srinivasan, G.1    James, C.M.2    Krzycki, J.A.3
  • 7
    • 34047120199 scopus 로고    scopus 로고
    • Recognition of pyrrolysine tRNA by the Desulfitobacterium hafniense pyrrolysyl-tRNA synthetase
    • Herring S., Ambrogelly A., Polycarpo C.R., and Söll D. Recognition of pyrrolysine tRNA by the Desulfitobacterium hafniense pyrrolysyl-tRNA synthetase. Nucleic Acid Res. 35 (2007) 1-9
    • (2007) Nucleic Acid Res. , vol.35 , pp. 1-9
    • Herring, S.1    Ambrogelly, A.2    Polycarpo, C.R.3    Söll, D.4
  • 8
    • 13244277554 scopus 로고    scopus 로고
    • Selenocysteine tRNA-specific elongation factor SelB is a structural chimaera of elongation and initiation factors
    • Leibundgut M., Frick C., Thanbichler M., Böck A., and Ban N. Selenocysteine tRNA-specific elongation factor SelB is a structural chimaera of elongation and initiation factors. EMBO J. 24 (2005) 11-22
    • (2005) EMBO J. , vol.24 , pp. 11-22
    • Leibundgut, M.1    Frick, C.2    Thanbichler, M.3    Böck, A.4    Ban, N.5
  • 9
    • 33750989874 scopus 로고    scopus 로고
    • Selenoprotein synthesis: UGA does not end the story
    • Allmang C., and Krol A. Selenoprotein synthesis: UGA does not end the story. Biochimie 88 (2006) 1561-1571
    • (2006) Biochimie , vol.88 , pp. 1561-1571
    • Allmang, C.1    Krol, A.2
  • 10
    • 0034757631 scopus 로고    scopus 로고
    • The selenocysteine incorporation machinery: interactions between the SECIS RNA and the SECIS-binding protein SBP2
    • Fletcher J.E., Copeland P.R., Driscoll D.M., and Krol A. The selenocysteine incorporation machinery: interactions between the SECIS RNA and the SECIS-binding protein SBP2. RNA 7 (2001) 1442-1453
    • (2001) RNA , vol.7 , pp. 1442-1453
    • Fletcher, J.E.1    Copeland, P.R.2    Driscoll, D.M.3    Krol, A.4
  • 11
    • 0842267214 scopus 로고    scopus 로고
    • Reprogrammed genetic decoding in cellular gene expression
    • Namy O., Rousset J.P., Napthine S., and Brierley I. Reprogrammed genetic decoding in cellular gene expression. Mol. Cell 13 (2004) 157-168
    • (2004) Mol. Cell , vol.13 , pp. 157-168
    • Namy, O.1    Rousset, J.P.2    Napthine, S.3    Brierley, I.4
  • 12
    • 24744437960 scopus 로고    scopus 로고
    • Evidence for the existence in mRNAs of a hairpin element responsible for ribosome dependent pyrrolysine insertion into proteins
    • Theobald-Dietrich A., Giegé R., and Rudinger-Thirion J. Evidence for the existence in mRNAs of a hairpin element responsible for ribosome dependent pyrrolysine insertion into proteins. Biochimie 87 (2005) 813-817
    • (2005) Biochimie , vol.87 , pp. 813-817
    • Theobald-Dietrich, A.1    Giegé, R.2    Rudinger-Thirion, J.3
  • 13
    • 20144384309 scopus 로고    scopus 로고
    • Pyrrolysine and selenocysteine use dissimilar decoding strategies
    • Zhang Y., Baranov P.V., Atkins J.F., and Gladyshev V.N. Pyrrolysine and selenocysteine use dissimilar decoding strategies. J. Biol. Chem. 280 (2005) 20740-20751
    • (2005) J. Biol. Chem. , vol.280 , pp. 20740-20751
    • Zhang, Y.1    Baranov, P.V.2    Atkins, J.F.3    Gladyshev, V.N.4
  • 15
    • 1842743704 scopus 로고    scopus 로고
    • Atypical archaeal tRNA pyrrolysine transcript behaves towards EF-Tu as a typical elongator tRNA
    • Theobald-Dietrich A., Frugier M., Giegé R., and Rudinger-Thirion J. Atypical archaeal tRNA pyrrolysine transcript behaves towards EF-Tu as a typical elongator tRNA. Nucleic Acid Res. 32 (2004) 1091-1096
    • (2004) Nucleic Acid Res. , vol.32 , pp. 1091-1096
    • Theobald-Dietrich, A.1    Frugier, M.2    Giegé, R.3    Rudinger-Thirion, J.4
  • 20
    • 2942544566 scopus 로고    scopus 로고
    • RSEARCH: finding homologs of single structured RNA sequences
    • Klein R.J., and Eddy S.R. RSEARCH: finding homologs of single structured RNA sequences. BMC Bioinform. 4 (2003) 44
    • (2003) BMC Bioinform. , vol.4 , pp. 44
    • Klein, R.J.1    Eddy, S.R.2
  • 21
    • 2942607685 scopus 로고    scopus 로고
    • A memory-efficient dynamic programming algorithm for optimal alignment of a sequence to an RNA secondary structure
    • Eddy S.R. A memory-efficient dynamic programming algorithm for optimal alignment of a sequence to an RNA secondary structure. BMC Bioinform. 3 (2002) 18
    • (2002) BMC Bioinform. , vol.3 , pp. 18
    • Eddy, S.R.1
  • 23
    • 0031438685 scopus 로고    scopus 로고
    • Searching for patterns in genomic data
    • Dsouza M., Larsen N., and Overbeek R. Searching for patterns in genomic data. Trends Genet. 13 (1997) 497-498
    • (1997) Trends Genet. , vol.13 , pp. 497-498
    • Dsouza, M.1    Larsen, N.2    Overbeek, R.3
  • 24
    • 0030812919 scopus 로고    scopus 로고
    • Finding the most significant common sequence and structure motifs in a set of RNA sequences
    • Gorodkin J., Heyer L.J., and Stormo G.D. Finding the most significant common sequence and structure motifs in a set of RNA sequences. Nucleic Acid Res. 25 (1997) 3724-3732
    • (1997) Nucleic Acid Res. , vol.25 , pp. 3724-3732
    • Gorodkin, J.1    Heyer, L.J.2    Stormo, G.D.3
  • 25
    • 3242882720 scopus 로고    scopus 로고
    • CARNAC: folding families of related RNAs
    • Touzet H., and Perriquet O. CARNAC: folding families of related RNAs. Nucleic Acid Res. 32 (2004) 142-145
    • (2004) Nucleic Acid Res. , vol.32 , pp. 142-145
    • Touzet, H.1    Perriquet, O.2
  • 26
    • 2942694026 scopus 로고    scopus 로고
    • RNAProfile: an algorithm for finding conserved secondary structure motifs in unaligned RNA sequences
    • Pavesi G., Mauri G., Stefani M., and Pesole G. RNAProfile: an algorithm for finding conserved secondary structure motifs in unaligned RNA sequences. Nucleic Acid Res. 32 (2004) 3258-3269
    • (2004) Nucleic Acid Res. , vol.32 , pp. 3258-3269
    • Pavesi, G.1    Mauri, G.2    Stefani, M.3    Pesole, G.4
  • 27
    • 33745610177 scopus 로고    scopus 로고
    • GenRGenS: software for generating random genomic sequences and structures
    • Ponty Y., Termier M., and Denise A. GenRGenS: software for generating random genomic sequences and structures. Bioinformatics 22 (2006) 1534-1535
    • (2006) Bioinformatics , vol.22 , pp. 1534-1535
    • Ponty, Y.1    Termier, M.2    Denise, A.3
  • 28
    • 0036267441 scopus 로고    scopus 로고
    • Translational readthrough of the PDE2 stop codon modulates cAMP levels in Saccharomyces cerevisiae
    • Namy O., Duchateau-Nguyen G., and Rousset J.P. Translational readthrough of the PDE2 stop codon modulates cAMP levels in Saccharomyces cerevisiae. Mol. Microbiol. 43 (2002) 641-652
    • (2002) Mol. Microbiol. , vol.43 , pp. 641-652
    • Namy, O.1    Duchateau-Nguyen, G.2    Rousset, J.P.3
  • 29
    • 0029070954 scopus 로고
    • Versatile vectors to study recoding: conservation of rules between yeast and mammalian cells
    • Stahl G., Bidou L., Rousset J.P., and Cassan M. Versatile vectors to study recoding: conservation of rules between yeast and mammalian cells. Nucleic Acid Res. 23 (1995) 1557-1560
    • (1995) Nucleic Acid Res. , vol.23 , pp. 1557-1560
    • Stahl, G.1    Bidou, L.2    Rousset, J.P.3    Cassan, M.4
  • 30
    • 0034005319 scopus 로고    scopus 로고
    • The trimethylamine methyltransferase gene and multiple dimethylamine methyltransferase genes of Methanosarcina barkeri contain in-frame and read-through amber codons
    • Paul L., Ferguson Jr. D.J., and Krzycki J.A. The trimethylamine methyltransferase gene and multiple dimethylamine methyltransferase genes of Methanosarcina barkeri contain in-frame and read-through amber codons. J. Bacteriol. 182 (2000) 2520-2529
    • (2000) J. Bacteriol. , vol.182 , pp. 2520-2529
    • Paul, L.1    Ferguson Jr., D.J.2    Krzycki, J.A.3
  • 32
    • 0043026859 scopus 로고    scopus 로고
    • Prokaryotic-style frameshifting in a plant translation system: conservation of an unusual single-tRNA slippage event
    • Napthine S., Vidakovic M., Girnary R., Namy O., and Brierley I. Prokaryotic-style frameshifting in a plant translation system: conservation of an unusual single-tRNA slippage event. EMBO J. 22 (2003) 3941-3950
    • (2003) EMBO J. , vol.22 , pp. 3941-3950
    • Napthine, S.1    Vidakovic, M.2    Girnary, R.3    Namy, O.4    Brierley, I.5
  • 33
    • 0035200990 scopus 로고    scopus 로고
    • Ribosomal pausing at a frameshifter RNA pseudoknot is sensitive to reading phase but shows little correlation with frameshift efficiency
    • Kontos H., Napthine S., and Brierley I. Ribosomal pausing at a frameshifter RNA pseudoknot is sensitive to reading phase but shows little correlation with frameshift efficiency. Mol. Cell Biol. 21 (2001) 8657-8670
    • (2001) Mol. Cell Biol. , vol.21 , pp. 8657-8670
    • Kontos, H.1    Napthine, S.2    Brierley, I.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.