-
1
-
-
39049094335
-
Virtual screening and its integration with modern drug design technologies
-
Guido R.V., Oliva G., and Andricopulo A.D. Virtual screening and its integration with modern drug design technologies. Current Medicinal Chemistry 15 1 (2008) 37-46
-
(2008)
Current Medicinal Chemistry
, vol.15
, Issue.1
, pp. 37-46
-
-
Guido, R.V.1
Oliva, G.2
Andricopulo, A.D.3
-
3
-
-
84862006528
-
Investigation of atomic level patterns in protein-small ligand interactions
-
Chen K., and Kurgan L. Investigation of atomic level patterns in protein-small ligand interactions. PLoS ONE 4 2 (2009) e4473
-
(2009)
PLoS ONE
, vol.4
, Issue.2
-
-
Chen, K.1
Kurgan, L.2
-
4
-
-
0033954256
-
The Protein Data Bank
-
Berman H.M., Westbrook J., Feng Z., Gilliland G., Bhat T.N., Weissig H., Shindyalov I.N., and Bourne P.E. The Protein Data Bank. Nucleic Acids Research 28 (2000) 235-242
-
(2000)
Nucleic Acids Research
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, P.E.8
-
5
-
-
0035487690
-
A tour of structural genomics
-
Brenner S.E. A tour of structural genomics. Nature Reviews Genetics 2 10 (2001) 801-809
-
(2001)
Nature Reviews Genetics
, vol.2
, Issue.10
, pp. 801-809
-
-
Brenner, S.E.1
-
6
-
-
66349104770
-
PSI-2: structural genomics to cover protein domain family space
-
Dessailly B.H., Nair R., Jaroszewski L., Fajardo J.E., Kouranov A., Lee D., Fiser A., Godzik A., Rost B., and Orengo C. PSI-2: structural genomics to cover protein domain family space. Structure 17 6 (2009) 869-881
-
(2009)
Structure
, vol.17
, Issue.6
, pp. 869-881
-
-
Dessailly, B.H.1
Nair, R.2
Jaroszewski, L.3
Fajardo, J.E.4
Kouranov, A.5
Lee, D.6
Fiser, A.7
Godzik, A.8
Rost, B.9
Orengo, C.10
-
7
-
-
70349921727
-
Sequence-based protein crystallization propensity prediction for structural genomics: review and comparative analysis
-
Kurgan L., and Mizianty M.J. Sequence-based protein crystallization propensity prediction for structural genomics: review and comparative analysis. Natural Science 1 2 (2009) 93-106
-
(2009)
Natural Science
, vol.1
, Issue.2
, pp. 93-106
-
-
Kurgan, L.1
Mizianty, M.J.2
-
8
-
-
14844360822
-
-
R. Service, Structural genomics, round 2, Science 307 (2005) 1554-1558.
-
R. Service, Structural genomics, round 2, Science 307 (2005) 1554-1558.
-
-
-
-
9
-
-
8844222708
-
TargetDB: a target registration database for structural genomics projects
-
Chen L., Oughtred R., Berman H.M., and Westbrook J. TargetDB: a target registration database for structural genomics projects. Bioinformatics 20 16 (2004) 2860-2862
-
(2004)
Bioinformatics
, vol.20
, Issue.16
, pp. 2860-2862
-
-
Chen, L.1
Oughtred, R.2
Berman, H.M.3
Westbrook, J.4
-
10
-
-
36949006066
-
XtalPred: a web server for prediction of protein crystallizability
-
Slabinski L., Jaroszewski L., Rychlewski L., Wilson I.A., Lesley S.A., and Godzik A. XtalPred: a web server for prediction of protein crystallizability. Bioinformatics 23 24 (2007) 3403-3405
-
(2007)
Bioinformatics
, vol.23
, Issue.24
, pp. 3403-3405
-
-
Slabinski, L.1
Jaroszewski, L.2
Rychlewski, L.3
Wilson, I.A.4
Lesley, S.A.5
Godzik, A.6
-
11
-
-
0037441549
-
Strategies for structural proteomics of prokaryotes: quantifying the advantages of studying orthologous proteins and of using both NMR and X-ray crystallography approaches
-
Savchenko A., Yee A., Khachatryan A., Skarina T., Evdokimova E., Pavlova M., Semesi A., Northey J., Beasley S., Lan N., Das R., Gerstein M., Arrowmith C.H., and Edwards A.M. Strategies for structural proteomics of prokaryotes: quantifying the advantages of studying orthologous proteins and of using both NMR and X-ray crystallography approaches. Proteins 50 (2003) 392-399
-
(2003)
Proteins
, vol.50
, pp. 392-399
-
-
Savchenko, A.1
Yee, A.2
Khachatryan, A.3
Skarina, T.4
Evdokimova, E.5
Pavlova, M.6
Semesi, A.7
Northey, J.8
Beasley, S.9
Lan, N.10
Das, R.11
Gerstein, M.12
Arrowmith, C.H.13
Edwards, A.M.14
-
12
-
-
10844244823
-
Implications of structural genomics target selection strategies: Pfam5000, whole genome, and random approaches
-
Chandonia J.M., and Brenner S.E. Implications of structural genomics target selection strategies: Pfam5000, whole genome, and random approaches. Proteins 58 (2005) 166-179
-
(2005)
Proteins
, vol.58
, pp. 166-179
-
-
Chandonia, J.M.1
Brenner, S.E.2
-
13
-
-
4744359693
-
Turning protein crystallisation from an art into a science
-
Chayen N.E. Turning protein crystallisation from an art into a science. Current Opinion in Structural Biology 14 5 (2004) 577-583
-
(2004)
Current Opinion in Structural Biology
, vol.14
, Issue.5
, pp. 577-583
-
-
Chayen, N.E.1
-
14
-
-
11844260128
-
Life in the fast lane for protein crystallization and X-ray crystallography
-
Puesy M., Liu Z.J., Tempel W., Praissman J., Lin D., Wang B.C., Gavira J.A., and Ng J.D. Life in the fast lane for protein crystallization and X-ray crystallography. Progress in Biophysics and Molecular Biology 88 (2005) 359-386
-
(2005)
Progress in Biophysics and Molecular Biology
, vol.88
, pp. 359-386
-
-
Puesy, M.1
Liu, Z.J.2
Tempel, W.3
Praissman, J.4
Lin, D.5
Wang, B.C.6
Gavira, J.A.7
Ng, J.D.8
-
15
-
-
59349103076
-
Understanding the physical properties that control protein crystallization by analysis of large-scale experimental data
-
Price W.N., Chen Y., Handelman S.K., Neely H., Manor P., Karlin R., Nair R., Liu J., Baran M., Everett J., Tong S.N., Forouhar F., Swaminathan S.S., Acton T., Xiao R., Luft J.R., Lauricella A., DeTitta G.T., Rost B., Montelione G.T., and Hunt J.F. Understanding the physical properties that control protein crystallization by analysis of large-scale experimental data. Nature Biotechnology 27 1 (2009) 51-57
-
(2009)
Nature Biotechnology
, vol.27
, Issue.1
, pp. 51-57
-
-
Price, W.N.1
Chen, Y.2
Handelman, S.K.3
Neely, H.4
Manor, P.5
Karlin, R.6
Nair, R.7
Liu, J.8
Baran, M.9
Everett, J.10
Tong, S.N.11
Forouhar, F.12
Swaminathan, S.S.13
Acton, T.14
Xiao, R.15
Luft, J.R.16
Lauricella, A.17
DeTitta, G.T.18
Rost, B.19
Montelione, G.T.20
Hunt, J.F.21
more..
-
16
-
-
30144445696
-
Will my protein crystallize? A sequence-based predictor
-
Smialowski P., Schmidt T., Cox J., Kirschner A., and Frishman D. Will my protein crystallize? A sequence-based predictor. Proteins 62 (2006) 343-355
-
(2006)
Proteins
, vol.62
, pp. 343-355
-
-
Smialowski, P.1
Schmidt, T.2
Cox, J.3
Kirschner, A.4
Frishman, D.5
-
17
-
-
33745431550
-
A normalised scale for structural genomics target ranking: the OB-Score
-
Overton I.M., and Barton G.J. A normalised scale for structural genomics target ranking: the OB-Score. FEBS Letters 580 (2006) 4005-4009
-
(2006)
FEBS Letters
, vol.580
, pp. 4005-4009
-
-
Overton, I.M.1
Barton, G.J.2
-
19
-
-
35648977694
-
The challenge of protein structure determination-lessons from structural genomics
-
Slabinski L., Jaroszewski L., Rodrigues A.P.C., Rychlewski L., Wilson I.A., Lesley S.A., and Godzik A. The challenge of protein structure determination-lessons from structural genomics. Protein Science 16 11 (2007) 2472-2482
-
(2007)
Protein Science
, vol.16
, Issue.11
, pp. 2472-2482
-
-
Slabinski, L.1
Jaroszewski, L.2
Rodrigues, A.P.C.3
Rychlewski, L.4
Wilson, I.A.5
Lesley, S.A.6
Godzik, A.7
-
20
-
-
41349121172
-
ParCrys: a Parzen window density estimation approach to protein crystallization propensity prediction
-
Overton I.M., Padovani G., Girolami M.A., and Barton G.J. ParCrys: a Parzen window density estimation approach to protein crystallization propensity prediction. Bioinformatics 24 (2008) 901-907
-
(2008)
Bioinformatics
, vol.24
, pp. 901-907
-
-
Overton, I.M.1
Padovani, G.2
Girolami, M.A.3
Barton, G.J.4
-
21
-
-
69249163807
-
CRYSTALP2: sequence-based protein crystallization propensity prediction
-
Kurgan L., Razib A.A., Aghakhani S., Dick S., Mizianty M.J., and Jahandideh S. CRYSTALP2: sequence-based protein crystallization propensity prediction. BMC Structural Biology 9 (2009) 50
-
(2009)
BMC Structural Biology
, vol.9
, pp. 50
-
-
Kurgan, L.1
Razib, A.A.2
Aghakhani, S.3
Dick, S.4
Mizianty, M.J.5
Jahandideh, S.6
-
22
-
-
36448960843
-
PFRES: protein fold classification by using evolutionary information and predicted secondary structure
-
Chen K., and Kurgan L. PFRES: protein fold classification by using evolutionary information and predicted secondary structure. Bioinformatics 23 21 (2007) 2843-2850
-
(2007)
Bioinformatics
, vol.23
, Issue.21
, pp. 2843-2850
-
-
Chen, K.1
Kurgan, L.2
-
23
-
-
33747586510
-
Improving the accuracy of protein secondary structure prediction using structural alignment
-
Montgomerie S., Sundararaj S., Gallin W.J., and Wishart D.S. Improving the accuracy of protein secondary structure prediction using structural alignment. BMC Bioinformatics 7 (2006) 301
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 301
-
-
Montgomerie, S.1
Sundararaj, S.2
Gallin, W.J.3
Wishart, D.S.4
-
24
-
-
47549108100
-
Predicting gene function in a hierarchical context with an ensemble of classifiers
-
Guan Y., Myers C.L., Hess D.C., Barutcuoglu Z., Caudy A.A., and Troyanskaya O.G. Predicting gene function in a hierarchical context with an ensemble of classifiers. Genome Biology 9 Suppl. 1 (2008) S3
-
(2008)
Genome Biology
, vol.9
, Issue.SUPPL. 1
-
-
Guan, Y.1
Myers, C.L.2
Hess, D.C.3
Barutcuoglu, Z.4
Caudy, A.A.5
Troyanskaya, O.G.6
-
25
-
-
33644873706
-
The RCSB PDB information portal for structural genomics
-
Kouranov A., Xie L., de la Cruz J., Chen L., Westbrook J., Bourne P.E., and Berman H.M. The RCSB PDB information portal for structural genomics. Nucleic Acids Research 4 (2006) D302-D305
-
(2006)
Nucleic Acids Research
, vol.4
-
-
Kouranov, A.1
Xie, L.2
de la Cruz, J.3
Chen, L.4
Westbrook, J.5
Bourne, P.E.6
Berman, H.M.7
-
28
-
-
70349908357
-
-
R. Quinlan, C4.5: Programs for Machine Learning, Morgan Kaufmann, 1993.
-
R. Quinlan, C4.5: Programs for Machine Learning, Morgan Kaufmann, 1993.
-
-
-
-
29
-
-
0034164230
-
Additive logistic regression: a statistical view of boosting
-
Friedman J., Hastie T., and Tibshirani R. Additive logistic regression: a statistical view of boosting. Annals of Statistic 38 2 (2000) 337-374
-
(2000)
Annals of Statistic
, vol.38
, Issue.2
, pp. 337-374
-
-
Friedman, J.1
Hastie, T.2
Tibshirani, R.3
-
30
-
-
0020475449
-
A simple method for displaying the hydropathic character of a protein
-
Kyte J., and Doolittle R.F. A simple method for displaying the hydropathic character of a protein. Journal of Molecular Biology 157 (1982) 105-132
-
(1982)
Journal of Molecular Biology
, vol.157
, pp. 105-132
-
-
Kyte, J.1
Doolittle, R.F.2
-
31
-
-
8544275816
-
Protein biophysical properties that correlate with crystallization success in Thermotoga maritima: maximum clustering strategy for structural genomics
-
Canaves J.M., Page R., Wilson I.A., and Stevens R.C. Protein biophysical properties that correlate with crystallization success in Thermotoga maritima: maximum clustering strategy for structural genomics. Journal of Molecular Biology 344 (2004) 977-991
-
(2004)
Journal of Molecular Biology
, vol.344
, pp. 977-991
-
-
Canaves, J.M.1
Page, R.2
Wilson, I.A.3
Stevens, R.C.4
-
32
-
-
5044250423
-
Protein isoelectric point as a predictor for increased crystallization screening efficiency
-
Kantardjieff K.A., and Rupp B. Protein isoelectric point as a predictor for increased crystallization screening efficiency. Bioinformatics 20 (2004) 2162-2168
-
(2004)
Bioinformatics
, vol.20
, pp. 2162-2168
-
-
Kantardjieff, K.A.1
Rupp, B.2
-
33
-
-
34247644927
-
Distributions of pI vs. pH provide strong prior information for the design of crystallization screening experiments
-
Kantardjieff K.A., Jamshidian M., and Rupp B. Distributions of pI vs. pH provide strong prior information for the design of crystallization screening experiments. Bioinformatics 20 (2004) 2171-2174
-
(2004)
Bioinformatics
, vol.20
, pp. 2171-2174
-
-
Kantardjieff, K.A.1
Jamshidian, M.2
Rupp, B.3
-
34
-
-
34547566008
-
Toward rational protein crystallization: a web server for the design of crystallizable protein variants
-
Goldschmidt L., Cooper D.R., Derewenda Z., and Eisenberg D. Toward rational protein crystallization: a web server for the design of crystallizable protein variants. Protein Science 16 (2007) 1569-1576
-
(2007)
Protein Science
, vol.16
, pp. 1569-1576
-
-
Goldschmidt, L.1
Cooper, D.R.2
Derewenda, Z.3
Eisenberg, D.4
|