Switching the chirality of the metal environment alters the coordination mode in designed peptides

Angewandte Chemie - International Edition

Volumn 48, Issue 40, 2009, Pages 7371-7374

  Peacock, Anna F A ^a   Stuckey, Jeanne A ^a   Pecoraro, Vincent L ^a  

^a UNIVERSITY OF MICHIGAN   (United States)

Author keywords

Cadmium; Crystallography; D amino acids; De novo peptides; Protein design

Indexed keywords

COILED COIL; COORDINATION ENVIRONMENT; COORDINATION MODES; D-AMINO ACIDS; DE NOVO PEPTIDES; PROTEIN DESIGN; SINGLE LAYER; SPECTROSCOPIC STUDIES;

AMINATION; AMINES; AMINO ACIDS; CADMIUM; CHIRALITY; ENANTIOMERS; MINERALOGY; ORGANIC ACIDS; PEPTIDES; SPECTROSCOPIC ANALYSIS; STEREOCHEMISTRY;

X RAY CRYSTALLOGRAPHY;

CADMIUM; PEPTIDE;

AMINO ACID SEQUENCE; ARTICLE; CHEMISTRY; MOLECULAR GENETICS; PROTEIN ENGINEERING; PROTEIN SECONDARY STRUCTURE; STEREOISOMERISM; X RAY CRYSTALLOGRAPHY;

AMINO ACID SEQUENCE; CADMIUM; CRYSTALLOGRAPHY, X-RAY; MOLECULAR SEQUENCE DATA; PEPTIDES; PROTEIN ENGINEERING; PROTEIN STRUCTURE, SECONDARY; STEREOISOMERISM;

EID: 70349928936     PISSN: 14337851     EISSN: None     Source Type: Journal    
DOI: 10.1002/anie.200902166     Document Type: Article

References (43)

1. W. F. DeGrado, C. M. Summa, V. Pavone, F. Nastri, A. Lombardi, Annu. Rev. Biochem. 1999, 68, 779.
2. D. Ghosh, V. L. Pecoraro, Inorg. Chem. 2004, 43, 7902.
3. G. R. Dieckmann, D. K. McRorie, J. D. Lear, K. A. Sharp, W. F. DeGrado, V. L. Pecoraro, J. Mol. Biol. 1998, 250, 897.
4. M. K. Yadav, J. E. Redman, L. J. Leman, J. M. Alvarez-Gutiérrez, Y. Zhang, C. D. Stout, M. R. Ghadiri, Biochemistry 2005, 44, 9723.
5. K.-H. Lee, M. Matzapetakis, S. Mitra, E. N. G. Marsh, V. L. Pecoraro, J. Am. Chem. Soc. 2004, 126, 9178.
6. G. R. Dieckmann, D. K. McRorie, D. L. Tierney, L. M. Utschig, C. P. Singer, T. V. O'Halloran, J. E. Penner-Hahn, W. F. DeGrado, V. L. Pecoraro, J. Am. Chem. Soc. 1997, 119, 6195.
7. A. K. Petros, S. E. Shaner, A. L. Costello, D. L. Tierney, B. R. Gibney, Inorg. Chem. 2004, 43, 4793.
8. K.-H. Lee, C. Cabello, L. Hemmingsen, E. N. G. Marsh, V. L. Pecoraro, Angew. Chem. 2006, 118, 2930;
9. Angew. Chem. Int. Ed. 2006, 45, 2864.
10. A. F. A. Peacock, L. Hemmingsen, V. L. Pecoraro, Proc. Nati. Acad. Sci. USA 2008, 105, 16566.
11. A. F. A. Peacock, O. Iranzo, V. L. Pecoraro, J. Chem. Soc. Dalton Trans. 2009, 2271.
12. K. T. O'Neil, W. F. DeGrado, Science 1990, 250, 646.
13. O. Iranzo, D. Ghosh, V. L. Pecoraro, Inorg. Chem. 2006, 45, 9959.
14. B. Lovejoy, S. Choe, D. Caseio, D. K. McRorie, W. F. DeGrado, D. Eisenberg, Science 1993, 259, 1288.
15. D. S. Touw, C. E. Nordman, J. E. Stuckey, V. L. Pecoraro, Proc. Nati. Acad. Sci. USA 2007, 104, 11969.
16. O. Iranzo, M. Stachura, T. Jakusch, K.-H. Lee, L. Hemmingsen, V. L. Pecoraro, Chem. Eur. J. 2007, 13, 9178.
17. O. Iranzo, C. Cabello, V. L. Pecoraro, Angew. Chem. 2007, 119, 6808;
18. Angew. Chem. Int. Ed. 2007, 46, 6688.
19. O. Iranzo, V. L. Pecoraro, unpublished results.
20. R. Fairman, S. J. Anthony-Cahill, W. F. DeGrado, J. Am. Chem. Soc. 1992, 114, 5458.
21. J. Hermans, A. G. Anderson, R. H. Yun, Biochemistry 1992, 31, 5646.
22. E. Krause, M. Bienert, P. Schmieder, H. Wenschuh, J. Am. Chem. Soc. 2000, 122, 4865.
23. Y. Chen, C. T. Mant, R. S. Hodges, J. Pept. Res. 2002, 59, 18.
24. H. Wendt, C. Berger, A. Baici, R. M. Thomas, H. R. Bosshard, Biochemistry 1995, 34, 4097.
25. E. Krause, M. Beyermann, M. Dathe, S. Rothemund, M. Bienert, Anal. Chem. 1995, 67, 252.
26. J. B. O. Mitchell, J. Smith, Proteins Struct. Funct. Genet. 2003, 50, 563.
27. S. K. Sia, P. S. Kim, Biochemistry 2001, 40, 8981.
28. T. Haack, M. J. González, Y. Sánchez, E. Giralt, Lett. Pept. Sci. 1997, 4, 377.
29. S. Aravinda, N. Shamala, R. S. Roy, P. Balaram, Proc. Indian Acad. Sci. Chem. Sci. 2003, 115, 373.
30. "The use of D-amino acids in peptide design": R. Mahalakshmi, P. Balaram in D-Amino Acids: A New Frontier in Amino Acid and Protein Research (Eds.: R. Konno, G. H. Fisher, H. Brueckner, A. d'Aniello, N. Fujii, H. Homma), Nova Science, NY, 2006, pp. 415-430.
31. S. Durani, Acc. Chem. Res. 2008, 41, 1301.
32. G. N. Ramachandran, V. Sasisekharan, Adv. Protein. Chem. 1968, 23, 283.
33. S. Aravinda, N. Shamala, S. Desiraju, P. Balaram, J. Chem. Soc. Chem. Commun. 2002, 2454.
34. I. L. Karle, H. N. Gopi, P. Balaram, Proc. Natl. Acad. Sci. USA 2003, 100, 13946.
35. Fmoc Solid Phase Peptide Synthesis: A Practical Approach (Eds.: W. C. Chan, P. D. White), Oxford University Press, New York, 2000, p. 346.
36. M. Mantle, G. Stewart, G. Zayas, M. King, Biochem. J. 1990, 266, 597.
37. M. Matzapetakis, D. Ghosh, T.-C. Weng, J. E. Penner-Hahn, V. L. Pecoraro, J. Biol. Inorg. Chem. 2006, 11, 876.
38. Z. Otwinowski, W. Minor, Enzymology 1997, 276, 307.
39. E. Potterton, P. Briggs, M. Turkenburg, E. Dodson, Acta Crystallogr. Sect. D 2003, 59, 1131.
40. A. J. McCoy, R. W. Grosse-Kunstleve, P. D. Adams, M. D. Winn, L. C. Storoni, R. J. Read, J. Appl. Crystallogr. 2007, 40, 658.
41. G. N. Murshudov, A. A. Vagin, E. J. Dodson, Acta Crystallogr. Sect. D 1997, 53, 240.
42. P. Emsley, K. Cowtan, Acta Crystallogr. Sect. D 2004, 20, 2126.
43. W. L. Delano, The PyMOL Molecular Graphics System, DeLano Scientific, Palo Alto, California, USA, 2005. http:// www.pymol.org.