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Volumn 27, Issue 6, 2009, Pages 989-995

Industrial bioprocess control and optimization in the context of systems biotechnology

Author keywords

Bioprocess control and optimization; Industrial bioprocess; Systems biotechnology

Indexed keywords

BIOPROCESS CONTROL; BIOPROCESS CONTROL AND OPTIMIZATION; BIOPROCESSES; CELLULAR BEHAVIORS; FUTURE PROSPECTS; INDUSTRIAL BIOPROCESS; INDUSTRIAL BIOPROCESSES; INDUSTRIAL BIOTECHNOLOGY; INDUSTRIAL PROCESSS; STRAIN IMPROVEMENT; SUCCESSFUL CASE; SURROUNDING ENVIRONMENT; SYSTEMS BIOTECHNOLOGY;

EID: 70349770725     PISSN: 07349750     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.biotechadv.2009.05.022     Document Type: Review
Times cited : (43)

References (56)
  • 1
    • 33845442201 scopus 로고    scopus 로고
    • Engineering yeast transcription machinery for improved ethanol tolerance and production
    • Alper H., Moxley J., Nevoigt E., Fink G.R., and Stephanopoulos G. Engineering yeast transcription machinery for improved ethanol tolerance and production. Science 314 (2006) 1565-1568
    • (2006) Science , vol.314 , pp. 1565-1568
    • Alper, H.1    Moxley, J.2    Nevoigt, E.3    Fink, G.R.4    Stephanopoulos, G.5
  • 4
    • 0037379691 scopus 로고    scopus 로고
    • New technologies to assess genotype-phenotype relationships
    • Bochner B.R. New technologies to assess genotype-phenotype relationships. Nat Rev Genet 4 (2003) 309-314
    • (2003) Nat Rev Genet , vol.4 , pp. 309-314
    • Bochner, B.R.1
  • 5
    • 57649123534 scopus 로고    scopus 로고
    • Global phenotypic characterization of bacteria
    • Bochner B.R. Global phenotypic characterization of bacteria. FEMS Microbiol Rev 33 (2009) 191-205
    • (2009) FEMS Microbiol Rev , vol.33 , pp. 191-205
    • Bochner, B.R.1
  • 6
    • 52749091260 scopus 로고    scopus 로고
    • Important discoveries from analysing bacterial phenotypes
    • Bochner B.R., Giovannetti L., and Viti C. Important discoveries from analysing bacterial phenotypes. Mol Microbiol 70 (2008) 274-280
    • (2008) Mol Microbiol , vol.70 , pp. 274-280
    • Bochner, B.R.1    Giovannetti, L.2    Viti, C.3
  • 7
    • 37349099750 scopus 로고    scopus 로고
    • A predictive model for transcriptional control of physiology in a free living cell
    • Bonneau R., Facciotti M.T., Reiss D.J., Schmid A.K., Pan M., Kaur A., et al. A predictive model for transcriptional control of physiology in a free living cell. Cell 131 (2007) 1354-1365
    • (2007) Cell , vol.131 , pp. 1354-1365
    • Bonneau, R.1    Facciotti, M.T.2    Reiss, D.J.3    Schmid, A.K.4    Pan, M.5    Kaur, A.6
  • 8
    • 10044278203 scopus 로고    scopus 로고
    • Numerical simulation of bubble columns flows: effect of different breakup and coalescence closures
    • Chen P., Sanyal J., and Dudukovic M.P. Numerical simulation of bubble columns flows: effect of different breakup and coalescence closures. Chem Eng Sci 60 (2005) 1085-1101
    • (2005) Chem Eng Sci , vol.60 , pp. 1085-1101
    • Chen, P.1    Sanyal, J.2    Dudukovic, M.P.3
  • 9
    • 0141942558 scopus 로고    scopus 로고
    • Using computational fluid dynamics software to estimate circulation time distributions in bioreactors
    • Davidson K.M., Sushil S., Eggleton C.D., and Marten M.R. Using computational fluid dynamics software to estimate circulation time distributions in bioreactors. Biotechnology Progress 19 (2003) 1480-1486
    • (2003) Biotechnology Progress , vol.19 , pp. 1480-1486
    • Davidson, K.M.1    Sushil, S.2    Eggleton, C.D.3    Marten, M.R.4
  • 10
    • 34249812377 scopus 로고    scopus 로고
    • Modeling of local dynamic behavior of phenol degradation in an internal loop airlift bioreactor by yeast Candida tropicalis
    • Feng W., Wen J., Liu C., Yuan Q., Jia X., and Sun Y. Modeling of local dynamic behavior of phenol degradation in an internal loop airlift bioreactor by yeast Candida tropicalis. Biotechnol Bioeng 97 (2007) 251-264
    • (2007) Biotechnol Bioeng , vol.97 , pp. 251-264
    • Feng, W.1    Wen, J.2    Liu, C.3    Yuan, Q.4    Jia, X.5    Sun, Y.6
  • 11
    • 58149473705 scopus 로고    scopus 로고
    • Bioreactor scale-up and oxygen transfer rate in microbial processes: an overview
    • Garcia-Ochoa F., and Gomez E. Bioreactor scale-up and oxygen transfer rate in microbial processes: an overview. Biotechnology Advances 27 (2009) 153-176
    • (2009) Biotechnology Advances , vol.27 , pp. 153-176
    • Garcia-Ochoa, F.1    Gomez, E.2
  • 13
    • 10644230916 scopus 로고    scopus 로고
    • Current two-dimensional electrophoresis technology for proteomics
    • Gorg A., Weiss W., and Dunn M.J. Current two-dimensional electrophoresis technology for proteomics. Proteomics 4 (2004) 3665-3685
    • (2004) Proteomics , vol.4 , pp. 3665-3685
    • Gorg, A.1    Weiss, W.2    Dunn, M.J.3
  • 14
    • 33750562156 scopus 로고    scopus 로고
    • Mixing times in a turbulent stirred tank by means of LES
    • Hartmann H., Derksen J.J., and van den Akker H.E.A. Mixing times in a turbulent stirred tank by means of LES. Aiche J 52 (2006) 3696-3706
    • (2006) Aiche J , vol.52 , pp. 3696-3706
    • Hartmann, H.1    Derksen, J.J.2    van den Akker, H.E.A.3
  • 15
    • 33244466065 scopus 로고    scopus 로고
    • Numerical simulation of a dissolution process in a stirred tank reactor
    • Hartmann H., Derksen J.J., and van den Akker H.E.A. Numerical simulation of a dissolution process in a stirred tank reactor. Chem Eng Sci 61 (2006) 3025-3032
    • (2006) Chem Eng Sci , vol.61 , pp. 3025-3032
    • Hartmann, H.1    Derksen, J.J.2    van den Akker, H.E.A.3
  • 16
  • 17
    • 0036433469 scopus 로고    scopus 로고
    • Primary and secondary metabolism, and post-translational protein modifications, as portrayed by proteomic analysis of Streptomyces coelicolor
    • Hesketh A.R., Chandra G., Shaw A.D., Rowland J.J., Kell D.B., Bibb M.J., et al. Primary and secondary metabolism, and post-translational protein modifications, as portrayed by proteomic analysis of Streptomyces coelicolor. Mol Microbiol 46 (2002) 917-932
    • (2002) Mol Microbiol , vol.46 , pp. 917-932
    • Hesketh, A.R.1    Chandra, G.2    Shaw, A.D.3    Rowland, J.J.4    Kell, D.B.5    Bibb, M.J.6
  • 18
    • 0038561132 scopus 로고    scopus 로고
    • Complete genome sequence and comparative analysis of the industrial microorganism Streptomyces avermitilis
    • Ikeda H., Ishikawa J., Hanamoto A., Shinose M., Kikuchi H., Shiba T., et al. Complete genome sequence and comparative analysis of the industrial microorganism Streptomyces avermitilis. Nat Biotechnol 21 (2003) 526-531
    • (2003) Nat Biotechnol , vol.21 , pp. 526-531
    • Ikeda, H.1    Ishikawa, J.2    Hanamoto, A.3    Shinose, M.4    Kikuchi, H.5    Shiba, T.6
  • 19
    • 34247612307 scopus 로고    scopus 로고
    • Multiple high-throughput analyses monitor the response of E. coli to perturbations
    • Ishii N., Nakahigashi K., Baba T., Robert M., Soga T., Kanai A., et al. Multiple high-throughput analyses monitor the response of E. coli to perturbations. Science 316 (2007) 593-597
    • (2007) Science , vol.316 , pp. 593-597
    • Ishii, N.1    Nakahigashi, K.2    Baba, T.3    Robert, M.4    Soga, T.5    Kanai, A.6
  • 20
    • 26444503030 scopus 로고    scopus 로고
    • Numerical simulation of turbulent batch mixing in a vessel agitated by a Rushton turbine
    • Javed K.H., Mahmud T., and Zhu J.M. Numerical simulation of turbulent batch mixing in a vessel agitated by a Rushton turbine. Chemical Engineering and Processing 45 (2006) 99-112
    • (2006) Chemical Engineering and Processing , vol.45 , pp. 99-112
    • Javed, K.H.1    Mahmud, T.2    Zhu, J.M.3
  • 21
    • 0035520747 scopus 로고    scopus 로고
    • The effect of size, location and pumping direction of pitched blade turbine impellers on flow patterns: LDA measurements and CFD predictions
    • Jaworski Z., Dyster K.N., and Nienow A.W. The effect of size, location and pumping direction of pitched blade turbine impellers on flow patterns: LDA measurements and CFD predictions. Trans IChemE 79 (2001) 887-893
    • (2001) Trans IChemE , vol.79 , pp. 887-893
    • Jaworski, Z.1    Dyster, K.N.2    Nienow, A.W.3
  • 22
    • 0342647596 scopus 로고    scopus 로고
    • Dependence of mycelial morphology on impeller type and agitation intensity
    • Jüsten P., Paul G.C., Nienow A.W., and Thomas C.R. Dependence of mycelial morphology on impeller type and agitation intensity. Biotechnol Bioeng 52 (1996) 672-684
    • (1996) Biotechnol Bioeng , vol.52 , pp. 672-684
    • Jüsten, P.1    Paul, G.C.2    Nienow, A.W.3    Thomas, C.R.4
  • 23
    • 33644986470 scopus 로고    scopus 로고
    • CFD modeling of gas dispersion and bubble size in a double turbine stirred tank
    • Kerdouss F., Bannari A., and Proulx P. CFD modeling of gas dispersion and bubble size in a double turbine stirred tank. Chem Eng Sci 61 (2006) 3313-3322
    • (2006) Chem Eng Sci , vol.61 , pp. 3313-3322
    • Kerdouss, F.1    Bannari, A.2    Proulx, P.3
  • 25
    • 44249111668 scopus 로고    scopus 로고
    • Application of functional genomics to pathway optimization for increased isoprenoid production
    • Kizer L., Pitera D.J., Pfleger B.F., and Keasling J.D. Application of functional genomics to pathway optimization for increased isoprenoid production. Appl Environ Microbiol 74 (2008) 3229-3241
    • (2008) Appl Environ Microbiol , vol.74 , pp. 3229-3241
    • Kizer, L.1    Pitera, D.J.2    Pfleger, B.F.3    Keasling, J.D.4
  • 27
    • 0002385458 scopus 로고
    • Dissipation of energy in locally isotropic turbulence
    • Kolmogorov A.N. Dissipation of energy in locally isotropic turbulence. Dokl Akad Nauk SSSR 32 (1941) 16-18
    • (1941) Dokl Akad Nauk SSSR , vol.32 , pp. 16-18
    • Kolmogorov, A.N.1
  • 28
    • 33846885651 scopus 로고    scopus 로고
    • Living with heterogeneities in bioreactors: under standing the effects of environmental gradients on cells
    • Lara A.R., Glindo E., Ramirez O.T., and Palomares L.A. Living with heterogeneities in bioreactors: under standing the effects of environmental gradients on cells. Molecular Biotechnology 34 (2006) 355-381
    • (2006) Molecular Biotechnology , vol.34 , pp. 355-381
    • Lara, A.R.1    Glindo, E.2    Ramirez, O.T.3    Palomares, L.A.4
  • 29
    • 36849002434 scopus 로고    scopus 로고
    • Systems metabolic engineering of Escherichia coli for L-threonine production
    • Lee K.H., Park J.H., Kim T.Y., Kim H.U., and Lee S.Y. Systems metabolic engineering of Escherichia coli for L-threonine production. Mol Syst Biol 3 (2007) 149
    • (2007) Mol Syst Biol , vol.3 , pp. 149
    • Lee, K.H.1    Park, J.H.2    Kim, T.Y.3    Kim, H.U.4    Lee, S.Y.5
  • 30
  • 31
    • 0036827410 scopus 로고    scopus 로고
    • Bubble-size distributions and flow fields in bubble columns
    • Lehr F., Millies M., and Mewes D. Bubble-size distributions and flow fields in bubble columns. Fluid Mech Transp Phenom 48 (2002) 2426-2443
    • (2002) Fluid Mech Transp Phenom , vol.48 , pp. 2426-2443
    • Lehr, F.1    Millies, M.2    Mewes, D.3
  • 33
    • 27744583045 scopus 로고    scopus 로고
    • All about DIGE: quantification technology for differential-display 2D-gel proteomics
    • Lilley K.S., and Friedman D.B. All about DIGE: quantification technology for differential-display 2D-gel proteomics. Expert Rev Proteomics 1 (2004) 401-409
    • (2004) Expert Rev Proteomics , vol.1 , pp. 401-409
    • Lilley, K.S.1    Friedman, D.B.2
  • 34
    • 47149109845 scopus 로고    scopus 로고
    • gTME for construction of recombinant yeast co-fermenting xylose and glucose
    • Liu H., Xu L., Yan M., Lai C., and Ouyang P. gTME for construction of recombinant yeast co-fermenting xylose and glucose. Sheng Wu Gong Cheng Xue Bao 24 (2008) 1010-1015
    • (2008) Sheng Wu Gong Cheng Xue Bao , vol.24 , pp. 1010-1015
    • Liu, H.1    Xu, L.2    Yan, M.3    Lai, C.4    Ouyang, P.5
  • 36
    • 42949128785 scopus 로고    scopus 로고
    • Fluorescent profiling of modular biosynthetic enzymes by complementary metabolic and activity based probes
    • Meier J.L., Mercer A.C., and Burkart M.D. Fluorescent profiling of modular biosynthetic enzymes by complementary metabolic and activity based probes. J Am Chem Soc 130 (2008) 5443-5445
    • (2008) J Am Chem Soc , vol.130 , pp. 5443-5445
    • Meier, J.L.1    Mercer, A.C.2    Burkart, M.D.3
  • 37
    • 0033104120 scopus 로고    scopus 로고
    • Prediction of flow fields in a dual-impeller stirred vessel
    • Micale G., Brucato A., Grisafi F, and Ciofalo M. Prediction of flow fields in a dual-impeller stirred vessel. AIChE Journal 45 (1999) 2133-2148
    • (1999) AIChE Journal , vol.45 , pp. 2133-2148
    • Micale, G.1    Brucato, A.2    Grisafi F, Ciofalo, M.3
  • 38
    • 33750575732 scopus 로고    scopus 로고
    • Protein stains for proteomic applications: which, when, why?
    • Miller I., Crawford J., and Gianazza E. Protein stains for proteomic applications: which, when, why?. Proteomics 6 (2006) 5385-5408
    • (2006) Proteomics , vol.6 , pp. 5385-5408
    • Miller, I.1    Crawford, J.2    Gianazza, E.3
  • 39
    • 29244432800 scopus 로고    scopus 로고
    • CFD simulation of mixing in a stirred tank with multiple hydrofoil impellers
    • Min J., Gao Z.M., and Shi L.T. CFD simulation of mixing in a stirred tank with multiple hydrofoil impellers. Chin J Chem Eng 13 (2005) 583-588
    • (2005) Chin J Chem Eng , vol.13 , pp. 583-588
    • Min, J.1    Gao, Z.M.2    Shi, L.T.3
  • 41
    • 0035941332 scopus 로고    scopus 로고
    • 2D and 3D simulations of an internal airlift loop reactor on the basis of a two-fluid model
    • Mudde R.F., and van den Akker H.E.A. 2D and 3D simulations of an internal airlift loop reactor on the basis of a two-fluid model. Chem Eng Sci 56 (2001) 6351-6358
    • (2001) Chem Eng Sci , vol.56 , pp. 6351-6358
    • Mudde, R.F.1    van den Akker, H.E.A.2
  • 42
    • 0038460070 scopus 로고    scopus 로고
    • Proteomic studies of diauxic lag in the differentiating prokaryote Streptomyces coelicolor reveal a regulatory network of stress-induced proteins and central metabolic enzymes
    • Novotna J., Vohradsky J., Berndt P., Gramajo H., Langen H., Li X.M., et al. Proteomic studies of diauxic lag in the differentiating prokaryote Streptomyces coelicolor reveal a regulatory network of stress-induced proteins and central metabolic enzymes. Mol Microbiol 48 (2003) 1289-1303
    • (2003) Mol Microbiol , vol.48 , pp. 1289-1303
    • Novotna, J.1    Vohradsky, J.2    Berndt, P.3    Gramajo, H.4    Langen, H.5    Li, X.M.6
  • 43
    • 34249934691 scopus 로고    scopus 로고
    • Metabolic engineering of Escherichia coli for the production of L-valine based on transcriptome analysis and in silico gene knockout simulation
    • Park J.H., Lee K.H., Kim T.Y., and Lee S.Y. Metabolic engineering of Escherichia coli for the production of L-valine based on transcriptome analysis and in silico gene knockout simulation. Proc Natl Acad Sci U S A 104 (2007) 7797-7802
    • (2007) Proc Natl Acad Sci U S A , vol.104 , pp. 7797-7802
    • Park, J.H.1    Lee, K.H.2    Kim, T.Y.3    Lee, S.Y.4
  • 45
    • 34547603601 scopus 로고    scopus 로고
    • Prediction of mass transfer coefficients in non-newtonian fermentation media using first-principles methods
    • Radl S., and Khinast J.G. Prediction of mass transfer coefficients in non-newtonian fermentation media using first-principles methods. Biotechnology and Bioengineering 97 (2007) 1329-1334
    • (2007) Biotechnology and Bioengineering , vol.97 , pp. 1329-1334
    • Radl, S.1    Khinast, J.G.2
  • 46
    • 0033232060 scopus 로고    scopus 로고
    • Numerical simulations of gas-liquid dynamics in cylindrical bubble column reactors
    • Sanyal J., Vasques S., Roy S., and Dudukovic M.P. Numerical simulations of gas-liquid dynamics in cylindrical bubble column reactors. Chem Eng Sci 54 (1999) 5071-5084
    • (1999) Chem Eng Sci , vol.54 , pp. 5071-5084
    • Sanyal, J.1    Vasques, S.2    Roy, S.3    Dudukovic, M.P.4
  • 47
    • 0002788075 scopus 로고
    • Problems of shear in biotechnology
    • Winkler M.A. (Ed), Elsevier Apllied Science, UK
    • Thomas C.R. Problems of shear in biotechnology. In: Winkler M.A. (Ed). Chemical engineering problems in biotechnology (1990), Elsevier Apllied Science, UK 23-94
    • (1990) Chemical engineering problems in biotechnology , pp. 23-94
    • Thomas, C.R.1
  • 48
    • 33847073370 scopus 로고    scopus 로고
    • Expanding the metabolic engineering toolbox: more options to engineer cells
    • Tyo K.E., Alper H.S., and Stephanopoulos G.N. Expanding the metabolic engineering toolbox: more options to engineer cells. Trends Biotechnol 25 (2007) 132-137
    • (2007) Trends Biotechnol , vol.25 , pp. 132-137
    • Tyo, K.E.1    Alper, H.S.2    Stephanopoulos, G.N.3
  • 49
    • 43149105407 scopus 로고    scopus 로고
    • Activity-based protein profiling: new developments and directions in functional proteomics
    • Uttamchandani M., Li J., Sun H., and Yao S.Q. Activity-based protein profiling: new developments and directions in functional proteomics. Chembiochem 9 (2008) 667-675
    • (2008) Chembiochem , vol.9 , pp. 667-675
    • Uttamchandani, M.1    Li, J.2    Sun, H.3    Yao, S.Q.4
  • 50
    • 0036751969 scopus 로고    scopus 로고
    • Computational fluid dynamics modeling of steady-state momentum and mass transport in a bioreactor for cartilage tissue engineering
    • Williams K.A., Saini S., and Wick T.M. Computational fluid dynamics modeling of steady-state momentum and mass transport in a bioreactor for cartilage tissue engineering. Biotechnol Prog 18 (2002) 951-963
    • (2002) Biotechnol Prog , vol.18 , pp. 951-963
    • Williams, K.A.1    Saini, S.2    Wick, T.M.3
  • 51
    • 54449100126 scopus 로고    scopus 로고
    • Mass spectrometry-based proteomics: principles, perspectives, and challenges
    • Wisniewski J.R. Mass spectrometry-based proteomics: principles, perspectives, and challenges. Arch Pathol Lab Med 132 (2008) 1566-1569
    • (2008) Arch Pathol Lab Med , vol.132 , pp. 1566-1569
    • Wisniewski, J.R.1
  • 52
    • 38849099107 scopus 로고    scopus 로고
    • Computational investigation of fluid dynamics in a recently developed centrifugal impeller bioreactor
    • Xia J.Y., Wang S.J., Zhang S.L., and Zhong J.J. Computational investigation of fluid dynamics in a recently developed centrifugal impeller bioreactor. Biochem Eng J 38 (2008) 406-413
    • (2008) Biochem Eng J , vol.38 , pp. 406-413
    • Xia, J.Y.1    Wang, S.J.2    Zhang, S.L.3    Zhong, J.J.4
  • 53
    • 58349110978 scopus 로고    scopus 로고
    • Fluid dynamics investigation of variant impeller combinations by simulation and fermentation experiment
    • Xia J.Y., Wang Y.H., Zhang S.L., Chen N., Yin P., Zhuang Y.P., et al. Fluid dynamics investigation of variant impeller combinations by simulation and fermentation experiment. Biochem Eng J 43 (2009) 252-260
    • (2009) Biochem Eng J , vol.43 , pp. 252-260
    • Xia, J.Y.1    Wang, Y.H.2    Zhang, S.L.3    Chen, N.4    Yin, P.5    Zhuang, Y.P.6
  • 54
    • 42249095952 scopus 로고    scopus 로고
    • Isolation of soluble proteins from an industrial strain Streptomyces avermitilis in complex culture medium for two-dimensional gel electrophoresis
    • Yin P., Wang Y.H., Zhang S.L., Chu J., Zhuang Y.P., Wang M.L., et al. Isolation of soluble proteins from an industrial strain Streptomyces avermitilis in complex culture medium for two-dimensional gel electrophoresis. J Microbiol Methods 73 (2008) 105-110
    • (2008) J Microbiol Methods , vol.73 , pp. 105-110
    • Yin, P.1    Wang, Y.H.2    Zhang, S.L.3    Chu, J.4    Zhuang, Y.P.5    Wang, M.L.6
  • 56
    • 3142783726 scopus 로고    scopus 로고
    • A multi-scale study of industrial fermentation processes and their optimization
    • Zhang S., Chu J., and Zhuang Y. A multi-scale study of industrial fermentation processes and their optimization. Adv Biochem Eng Biotechnol 87 (2004) 97-150
    • (2004) Adv Biochem Eng Biotechnol , vol.87 , pp. 97-150
    • Zhang, S.1    Chu, J.2    Zhuang, Y.3


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