Electrophoretical stretching of DNA in a hybrid microchannel

Polymer

Volumn 50, Issue 22, 2009, Pages 5326-5332

  Chuncheng, Zuo ^a   Feng, Ji ^a   Qianqian, Cao ^a  

^a JILIN UNIVERSITY   (China)

Author keywords

Brownian dynamics; DNA; Hybrid microchannel

Indexed keywords

BIOINFORMATICS; BROWNIAN MOVEMENT; CYLINDERS (SHAPES); DNA;

BROWNIAN DYNAMICS; BROWNIAN DYNAMICS SIMULATIONS; COMPUTATIONAL RESULTS; MICRO-CONTRACTIONS; STRETCHING PROCESS;

MICROCHANNELS;

COMPUTER CONTROL; DNA; INSULATION; SIMULATION; STRETCH;

EID: 70349762599     PISSN: 00323861     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.polymer.2009.09.043     Document Type: Article

References (42)

1. Smith S.B., Cui Y., and Bustamante C. Science 271 (1996) 795-799
2. Simmons R.M., Finer J.T., Chu S., and Spudich J.A. Biophys J 70 (1996) 1813-1822
3. Amblard F., Yurke B., Pargellis A., and Leibler S. Rev Sci Instrum 67 (1996) 818-827
4. Schwartz D.C., Li X., Hernandez L.I., Ramnarain S.P., Huff E.J., and Wang Y.K. Science 262 (1993) 110-114
5. Petit C.A.P., and Carbeck J.D. Nano Lett 3 (2003) 1141-1146
6. Michalet X., Ekong R., Fougerousse F., Rousseaux S., Schurra C., Hornigold N., et al. Science 277 (1997) 1518-1523
7. Dimalanta E.T., Lim A., Runnheim R., Lamers C., Churas C., Forrest D.K., et al. Anal Chem 76 (2004) 5293-5301
8. Aston C., Hiort C., and Schwartz D.C. Methods Enzymol 303 (1999) 55-73
9. Tegenfeldt J.O., Prinz C., Cao H., Chou S., Reisner W.W., Riehn R., et al. Proc Natl Acad Sci U S A 101 (2004) 10979-10983
10. Li W., Tegenfeldt J.O., Chen L., Austin R.H., Chou S.Y., Kohl P., et al. Nanotechnology 14 (2003) 578-583
11. Riehn R., Lu M., Wang Y.-M., Lim S.F., Cox E.C., and Austin R.H. Proc Natl Acad Sci U S A 102 (2005) 10012-10016
12. Perkins T.T., Smith D.E., Larson R.G., and Chu S. Science 268 (1995) 83-87
13. Ferree S., and Blanch H.W. Biophys J 85 (2003) 2539-2546
14. Tegenfeldt J.O., Bakajin O., Chou C.-F., Chan S.S., Austin R., Fann W., et al. Phys Rev Lett 86 (2001) 1378-1381
15. Larson J.W., Yantz G.R., Zhong Q., Charnas R., D'Antoni C.M., Gallo M.V., et al. Lab Chip 6 (2006) 1187-1199
16. Chan E.Y., Goncalves N.M., Haeusler R.A., Hatch A.J., Larson J.W., Maletta A.M., et al. Genome Res 14 (2004) 1137-1146
17. Hofmann T., Winkler R.G., and Reineker P. Phys Rev E 61 (2000) 2840-2847
18. Ripoll M., Winkler R.G., and Gompper G. Phys Rev Lett 96 (2006) 188302
19. Winkler R.G. Phys Rev Lett 97 (2006) 128301
20. Petera D., and Muthukumar M. J Chem Phys 111 (1999) 7614-7623
21. Liu S., Ashok B., and Muthukumar M. Polymer 45 (2004) 1383-1389
22. Streek M., Schmid F., Duong T.T., Anselmetti D., and Ros A. Phys Rev E 71 (2005) 011905
23. Panwar A.S., and Kumar S. Macromolecules 39 (2006) 1279-1289
24. Panwar A.S., and Kumar S. J Chem Phys 118 (2003) 925-936
25. Larson R.G., Hu H., Smith D.E., and Chu S. J Rheol 43 (1999) 267-304
26. Jendrejack R.M., Schwartz D.C., Pablo J.J.d., and Graham M.D. J Chem Phys 120 (2004) 2513-2529
27. Jendrejack R.M., Pablo J.J.d., and Graham M.D. J Chem Phys 116 (2002) 7752-7759
28. Randall G.C., and Doyle P.S. Phys Rev Lett 93 (2004) 058102
29. Randall G.C., and Doyle P.S. Macromolecules 38 (2005) 2410-2418
30. Randall G.C., Schultz K.M., and Doyle P.S. Lab Chip 6 (2006) 516-525
31. Kim J.M., and Doyle P.S. Lab Chip 7 (2007) 213-225
32. Kim J.M., and Doyle P.S. J Chem Phys 125 (2006) 074906
33. Larson R.G. J Non-Newton Fluid Mech 94 (2000) 37-45
34. Balducci A., and Doyle P.S. Macromolecules 41 (2008) 5485-5492
35. Ermak D.L., and McCammon J.A. J Chem Phys 69 (1978) 1352-1360
36. Rotne J., and Prager S. J Chem Phys 50 (1969) 4831-4837
37. Cohen A. Rheol Acta 30 (1991) 270-273
38. Jendrejack R.M., Schwartz D.C., Graham M.D., and Pablo J.J.d. J Chem Phys 119 (2003) 1165-1173
39. Schroeder C.M., Shaqgeh E.S.G., and Chu S. Macromolecules 37 (2004) 9242-9256
40. Somasi M., Khomami B., Woo N.J., Hur J.S., and Shaqfeh E.S.G. J Non-Newton Fluid Mech 108 (2002) 227-255
41. Hsieh C.C., Li L., and Larson R.G. J Non-Newton Fluid Mech 113 (2003) 147-191
42. Chuncheng Z., Feng J., Qianqian C., and Jingsong Y. Polymer 49 (2008) 809-815