메뉴 건너뛰기




Volumn 43, Issue 2, 1999, Pages 267-304

Brownian dynamics simulations of a DNa molecule in an extensional flow field

Author keywords

[No Author keywords available]

Indexed keywords


EID: 0000084780     PISSN: 01486055     EISSN: None     Source Type: Journal    
DOI: 10.1122/1.550991     Document Type: Article
Times cited : (195)

References (64)
  • 1
    • 0000953719 scopus 로고
    • Dilute solution rheology of flexible macromolecules (bead-rod) model
    • Acierno, D., G. Titomanlio, and G. Marrucci, "Dilute solution rheology of flexible macromolecules (bead-rod) model)," J. Polym. Sci., Polym. Lett. Ed. 12, 2177-2187 (1974).
    • (1974) J. Polym. Sci., Polym. Lett. Ed. , vol.12 , pp. 2177-2187
    • Acierno, D.1    Titomanlio, G.2    Marrucci, G.3
  • 2
    • 0019021082 scopus 로고
    • Conformational changes of macromolecules in transient elongational flow
    • Armstrong, R. C., S. K. Gupta, and O. Basaran, "Conformational changes of macromolecules in transient elongational flow," Polym. Eng. Sci. 20, 466-472 (1980).
    • (1980) Polym. Eng. Sci. , vol.20 , pp. 466-472
    • Armstrong, R.C.1    Gupta, S.K.2    Basaran, O.3
  • 5
    • 0025225075 scopus 로고
    • The optical and mechanical response of flexible polymer solutions to extensional flow
    • Cathey, C. A. and G. G. Fuller, "The optical and mechanical response of flexible polymer solutions to extensional flow," J. Non-Newtonian Fluid Mech. 34, 63-88 (1990).
    • (1990) J. Non-Newtonian Fluid Mech. , vol.34 , pp. 63-88
    • Cathey, C.A.1    Fuller, G.G.2
  • 6
    • 0003119328 scopus 로고
    • Sur la theorie des proprietes hydrodynamiques de solutions de macromolecules en chaines
    • Cerf, R. J., "Sur la theorie des proprietes hydrodynamiques de solutions de macromolecules en chaines," J. Chim. Phys. Phys.-Chim. Biol. 66, 479-488 (1969).
    • (1969) J. Chim. Phys. Phys.-Chim. Biol. , vol.66 , pp. 479-488
    • Cerf, R.J.1
  • 7
    • 0014552328 scopus 로고
    • Conformation of polyisobutylene in dilute solution subjected to a hydrodynamic shear field
    • Cottrell, F. R., E. W. Merrill, and K. A. Smith, "Conformation of polyisobutylene in dilute solution subjected to a hydrodynamic shear field," J. Polym. Sci. A-2 7, 1415-1434 (1969).
    • (1969) J. Polym. Sci. A-2 , vol.7 , pp. 1415-1434
    • Cottrell, F.R.1    Merrill, E.W.2    Smith, K.A.3
  • 8
    • 0031103313 scopus 로고    scopus 로고
    • Dynamic simulation of polymers in linear flows: I. Flexible polymers
    • Doyle, P. S., E. S. G. Shaqfeh, and A. P. Gast, "Dynamic simulation of polymers in linear flows: I. Flexible polymers," J. Fluid Mech. 334, 251-291 (1997).
    • (1997) J. Fluid Mech. , vol.334 , pp. 251-291
    • Doyle, P.S.1    Shaqfeh, E.S.G.2    Gast, A.P.3
  • 9
    • 0032050232 scopus 로고    scopus 로고
    • Dynamic simulation of freely-draining, flexible bead-rod chains: Start-up of extensional and shear flow
    • Doyle, P. S. and E. S. G. Shaqfeh, "Dynamic simulation of freely-draining, flexible bead-rod chains: Start-up of extensional and shear flow," J. Non-Newtonian Fluid Mech. 76, 43-78 (1998).
    • (1998) J. Non-Newtonian Fluid Mech. , vol.76 , pp. 43-78
    • Doyle, P.S.1    Shaqfeh, E.S.G.2
  • 10
    • 0022682397 scopus 로고
    • Dilute polystyrene solutions in extensional flows: Birefringence and flow modification
    • Dunlap, P. N. and L. G. Leal, "Dilute polystyrene solutions in extensional flows: birefringence and flow modification," J. Non-Newtonian Fluid Mech. 23, 5-48 (1987).
    • (1987) J. Non-Newtonian Fluid Mech. , vol.23 , pp. 5-48
    • Dunlap, P.N.1    Leal, L.G.2
  • 11
    • 36749109216 scopus 로고
    • Coil-stretch transition of dilute flexible polymers under ultrahigh velocity gradients
    • de Gennes, P. G., "Coil-stretch transition of dilute flexible polymers under ultrahigh velocity gradients," J. Chem. Phys. 60, 5030-5042 (1974).
    • (1974) J. Chem. Phys. , vol.60 , pp. 5030-5042
    • De Gennes, P.G.1
  • 12
    • 33750652614 scopus 로고
    • Brownian dynamics with hydrodynamic interactions
    • Ermak, D. L. and J. A. McCammon, "Brownian dynamics with hydrodynamic interactions," J. Chem. Phys. 69, 1352-1560 (1978).
    • (1978) J. Chem. Phys. , vol.69 , pp. 1352-1560
    • Ermak, D.L.1    McCammon, J.A.2
  • 14
    • 0028484814 scopus 로고
    • Connection between polymer molecular weight, density, chain dimensions, and melt viscoelastic properties
    • Fetters, L. J., D. J. Lohse, D. Richter, T. A. Witten, and A. Zirkel, "Connection between polymer molecular weight, density, chain dimensions, and melt viscoelastic properties," Macromolecules 27, 4639-4647 (1994).
    • (1994) Macromolecules , vol.27 , pp. 4639-4647
    • Fetters, L.J.1    Lohse, D.J.2    Richter, D.3    Witten, T.A.4    Zirkel, A.5
  • 15
    • 33845539992 scopus 로고
    • Simulation of polymer dynamics
    • Fixman, M., "Simulation of polymer dynamics," J. Chem. Phys. 69, 1527-1537 (1978).
    • (1978) J. Chem. Phys. , vol.69 , pp. 1527-1537
    • Fixman, M.1
  • 16
    • 0002952002 scopus 로고
    • Orientation and rupture of linear macromolecules in dilute solutions under the influence of viscous flow
    • Frenkel, J., "Orientation and rupture of linear macromolecules in dilute solutions under the influence of viscous flow," Acta Physicochim. URSS 19, 51-76 (1944).
    • (1944) Acta Physicochim. URSS , vol.19 , pp. 51-76
    • Frenkel, J.1
  • 17
    • 0000485304 scopus 로고
    • Flow birefringence of dilute polymer solutions in two-dimensional flows
    • Fuller, G. G. and L. G. Leal, "Flow birefringence of dilute polymer solutions in two-dimensional flows," Rheol. Acta 19, 580-600 (1980).
    • (1980) Rheol. Acta , vol.19 , pp. 580-600
    • Fuller, G.G.1    Leal, L.G.2
  • 18
    • 0026821542 scopus 로고
    • Computer simulation of viscoelasticity in polymer melts
    • Gao, J. and J. H. Weiner, "Computer simulation of viscoelasticity in polymer melts," Macromolecules 25, 1348-1356 (1992).
    • (1992) Macromolecules , vol.25 , pp. 1348-1356
    • Gao, J.1    Weiner, J.H.2
  • 19
    • 0028976269 scopus 로고
    • Computer simulations of Brownian motion of complex systems
    • Grassia, P., E. J. Hinch, and L. C. Nitsche, "Computer simulations of Brownian motion of complex systems," J. Fluid Mech. 282, 373-403 (1995).
    • (1995) J. Fluid Mech. , vol.282 , pp. 373-403
    • Grassia, P.1    Hinch, E.J.2    Nitsche, L.C.3
  • 20
    • 0030084649 scopus 로고    scopus 로고
    • Computer simulations of polymer chain relaxation via Brownian motion
    • Grassia, P. and E. J. Hinch, "Computer simulations of polymer chain relaxation via Brownian motion," J. Fluid Mech. 308, 255-288 (1996).
    • (1996) J. Fluid Mech. , vol.308 , pp. 255-288
    • Grassia, P.1    Hinch, E.J.2
  • 21
    • 0030837248 scopus 로고    scopus 로고
    • A detailed comparison of various FENE dumbbell models
    • Herrchen, M. and H. C. Ottinger, "A detailed comparison of various FENE dumbbell models," J. Non-Newtonian Fluid Mech. 68, 17-42 (1997).
    • (1997) J. Non-Newtonian Fluid Mech. , vol.68 , pp. 17-42
    • Herrchen, M.1    Ottinger, H.C.2
  • 23
    • 36749112156 scopus 로고
    • Mechanical models of dilute polymer solutions in strong flows
    • Hinch, E. J., "Mechanical models of dilute polymer solutions in strong flows," Phys. Fluids 20, S22-S30 (1977).
    • (1977) Phys. Fluids , vol.20
    • Hinch, E.J.1
  • 24
    • 0028481810 scopus 로고
    • Uncoiling a polymer molecule in a strong extensional flow
    • Hinch, E. J., "Uncoiling a polymer molecule in a strong extensional flow," J. Non-Newtonian Fluid Mech. 54, 209-230 (1994).
    • (1994) J. Non-Newtonian Fluid Mech. , vol.54 , pp. 209-230
    • Hinch, E.J.1
  • 25
    • 0001461520 scopus 로고
    • Molecular conformation during steady-state measurements of extensional viscosity
    • James, D. F. and T. Sridhar, "Molecular conformation during steady-state measurements of extensional viscosity," J. Rheol. 39, 713-724 (1995).
    • (1995) J. Rheol. , vol.39 , pp. 713-724
    • James, D.F.1    Sridhar, T.2
  • 26
    • 0022027349 scopus 로고
    • The extensibility of macromolecules in solution: A new focus for macromolecular science
    • Keller, A. and J. A. Odell, "The extensibility of macromolecules in solution: a new focus for macromolecular science," Colloid Polym. Sci. 263, 181-201 (1985).
    • (1985) Colloid Polym. Sci. , vol.263 , pp. 181-201
    • Keller, A.1    Odell, J.A.2
  • 27
    • 0030998030 scopus 로고    scopus 로고
    • On the Peterlin approximation for finitely extensible dumbbell models
    • Keunings, R., "On the Peterlin approximation for finitely extensible dumbbell models," J. Non-Newtonian Fluid Mech. 68, 85-100 (1997).
    • (1997) J. Non-Newtonian Fluid Mech. , vol.68 , pp. 85-100
    • Keunings, R.1
  • 28
    • 0001267184 scopus 로고
    • Analysis of the Rouse model in extensional flow. II. Stresses generated in sink flow by flexible macromolecules and by finitely extended macromolecules
    • King, D. H. and D. F. James, "Analysis of the Rouse model in extensional flow. II. Stresses generated in sink flow by flexible macromolecules and by finitely extended macromolecules," J. Chem. Phys. 78, 4749-4748 (1983).
    • (1983) J. Chem. Phys. , vol.78 , pp. 4749-14748
    • King, D.H.1    James, D.F.2
  • 29
    • 0025384092 scopus 로고
    • A discussion of shear thickening in bead-spring models
    • Kishbaugh, A. J. and A. J. McHugh, "A discussion of shear thickening in bead-spring models," J. Non-Newtonian Fluid Mech. 34, 181-206 (1990).
    • (1990) J. Non-Newtonian Fluid Mech. , vol.34 , pp. 181-206
    • Kishbaugh, A.J.1    McHugh, A.J.2
  • 30
    • 0343417367 scopus 로고
    • Dynamics of entangled linear polymer melts: A molecular-dynamics simulation
    • Kremer, K. and G. S. Grest, "Dynamics of entangled linear polymer melts: a molecular-dynamics simulation," Macromolecules 92, 5057-5086 (1990).
    • (1990) Macromolecules , vol.92 , pp. 5057-5086
    • Kremer, K.1    Grest, G.S.2
  • 31
    • 4243789862 scopus 로고
    • NEMD computer simulation of polymer melt rheology
    • Kroger, M., "NEMD computer simulation of polymer melt rheology," Rheology June/July, 66-71 (1995).
    • (1995) Rheology , vol.JUNE-JULY , pp. 66-71
    • Kroger, M.1
  • 32
    • 0011066764 scopus 로고
    • Über die Gestalt fadenförmiger Moleküle in Lösungen
    • Kuhn, W., "Über die Gestalt fadenförmiger Moleküle in Lösungen," Kolloid-Z. 68, 2-5 (1934).
    • (1934) Kolloid-Z. , vol.68 , pp. 2-5
    • Kuhn, W.1
  • 34
    • 0002336864 scopus 로고
    • The unraveling of a polymer chain in a strong extensional flow
    • Larson, R. G., "The unraveling of a polymer chain in a strong extensional flow," Rheol. Acta 29, 371-384 (1990).
    • (1990) Rheol. Acta , vol.29 , pp. 371-384
    • Larson, R.G.1
  • 35
    • 0000301498 scopus 로고    scopus 로고
    • Hydrodynamics of a DNA molecule in a flow field
    • Larson, R. G., T. Perkins, D. Smith, and S. Chu, "Hydrodynamics of a DNA molecule in a flow field," Phys. Rev. E 55, 1794-1797 (1997).
    • (1997) Phys. Rev. E , vol.55 , pp. 1794-1797
    • Larson, R.G.1    Perkins, T.2    Smith, D.3    Chu, S.4
  • 37
    • 0031272724 scopus 로고    scopus 로고
    • Molecular orientation and deformation of polymer solutions under shear: A flow light scattering study
    • Lee, E. C., M. J. Solomon, and S. J. Muller, "Molecular orientation and deformation of polymer solutions under shear: A flow light scattering study," Macromolecules 30, 7313-7321 (1997).
    • (1997) Macromolecules , vol.30 , pp. 7313-7321
    • Lee, E.C.1    Solomon, M.J.2    Muller, S.J.3
  • 38
    • 36549103686 scopus 로고
    • Flexible polymer chain dynamics and rheological properties in steady flows
    • Liu, T. W., "Flexible polymer chain dynamics and rheological properties in steady flows," J. Chem. Phys. 90, 5826-5842 (1989).
    • (1989) J. Chem. Phys. , vol.90 , pp. 5826-5842
    • Liu, T.W.1
  • 39
    • 0023104344 scopus 로고
    • An explanation of the rheological properties of Boger fluids
    • Mackay, M. E. and D. V. Boger, "An explanation of the rheological properties of Boger fluids," J. Non-Newtonian Fluid Mech. 22, 235-243 (1987).
    • (1987) J. Non-Newtonian Fluid Mech. , vol.22 , pp. 235-243
    • Mackay, M.E.1    Boger, D.V.2
  • 40
    • 36549104657 scopus 로고
    • Deformation-dependent hydrodynamic interaction in flows of dilute polymer solutions
    • Magda, J. J., R. G. Larson, and M. E. Mackay, "Deformation-dependent hydrodynamic interaction in flows of dilute polymer solutions," J. Chem. Phys. 89, 2504-2513 (1988).
    • (1988) J. Chem. Phys. , vol.89 , pp. 2504-2513
    • Magda, J.J.1    Larson, R.G.2    Mackay, M.E.3
  • 41
    • 0006269870 scopus 로고
    • Stress jumps predicted by the internal viscosity model with hydrodynamic interaction
    • Manke, C. W. and M. C. Williams, "Stress jumps predicted by the internal viscosity model with hydrodynamic interaction," J. Rheol. 36, 1261-1274 (1992).
    • (1992) J. Rheol. , vol.36 , pp. 1261-1274
    • Manke, C.W.1    Williams, M.C.2
  • 43
    • 0026155744 scopus 로고
    • Light scattering from dilute poly(styrene) solutions in uniaxial elongational flow
    • Menasveta, M. J. and D. A. Hoagland, "Light scattering from dilute poly(styrene) solutions in uniaxial elongational flow," Macromolecules 24, 3427-3433 (1991).
    • (1991) Macromolecules , vol.24 , pp. 3427-3433
    • Menasveta, M.J.1    Hoagland, D.A.2
  • 44
    • 0030286718 scopus 로고    scopus 로고
    • Stress relaxation in uniaxial extension
    • Orr, N. V. and T. Sridhar, "Stress relaxation in uniaxial extension," J. Non-Newtonian Fluid Mech. 67, 77-103 (1996).
    • (1996) J. Non-Newtonian Fluid Mech. , vol.67 , pp. 77-103
    • Orr, N.V.1    Sridhar, T.2
  • 45
    • 0001580223 scopus 로고
    • Generalized Zimm model for dilute polymer solutions under theta conditions
    • Öttinger, H. C., "Generalized Zimm model for dilute polymer solutions under theta conditions," J. Chem. Phys. 86, 3731-3749 (1987).
    • (1987) J. Chem. Phys. , vol.86 , pp. 3731-3749
    • Öttinger, H.C.1
  • 47
    • 0028766432 scopus 로고
    • Direct observation of tube-like motion of a single polymer chain
    • Perkins, T. T., D. E. Smith, and S. Chu, "Direct observation of tube-like motion of a single polymer chain," Science 264, 819-826 (1994).
    • (1994) Science , vol.264 , pp. 819-826
    • Perkins, T.T.1    Smith, D.E.2    Chu, S.3
  • 48
    • 0029638377 scopus 로고
    • Stretching of a single tethered polymer in a uniform flow
    • Perkins, T. T., D. E. Smith, R. G. Larson, and S. Chu, "Stretching of a single tethered polymer in a uniform flow," Science 268, 83-87 (1995).
    • (1995) Science , vol.268 , pp. 83-87
    • Perkins, T.T.1    Smith, D.E.2    Larson, R.G.3    Chu, S.4
  • 49
    • 1842368477 scopus 로고    scopus 로고
    • Single polymer dynamics in an elongational flow
    • Perkins, T. T., D. E. Smith, and S. Chu, "Single polymer dynamics in an elongational flow," Science 276, 2016-2021 (1997).
    • (1997) Science , vol.276 , pp. 2016-2021
    • Perkins, T.T.1    Smith, D.E.2    Chu, S.3
  • 50
    • 0000098023 scopus 로고
    • Hydrodynamics of linear macromolecules
    • Peterlin, A., "Hydrodynamics of linear macromolecules," Pure Appl. Chem. 12, 563-586 (1966).
    • (1966) Pure Appl. Chem. , vol.12 , pp. 563-586
    • Peterlin, A.1
  • 51
    • 0003027396 scopus 로고
    • A study of conformation-dependent friction in a dumbbell model
    • Phan Thien, N., O. Manero, and L. G. Leal, "A study of conformation-dependent friction in a dumbbell model," Rheol. Acta 23, 151-162 (1984).
    • (1984) Rheol. Acta , vol.23 , pp. 151-162
    • Phan Thien, N.1    Manero, O.2    Leal, L.G.3
  • 52
    • 0024067937 scopus 로고
    • Do we understand the physics in the constitutive equation?
    • Rallison, J. M. and E. J. Hinch, "Do we understand the physics in the constitutive equation?" J. Non-Newtonian Fluid Mech. 29, 37-55 (1988).
    • (1988) J. Non-Newtonian Fluid Mech. , vol.29 , pp. 37-55
    • Rallison, J.M.1    Hinch, E.J.2
  • 53
    • 0030891521 scopus 로고    scopus 로고
    • Dissipative stresses in dilute polymer solutions
    • Rallison, J. M., "Dissipative stresses in dilute polymer solutions," J. Non-Newtonian Fluid Mech. 68, 61-83 (1997).
    • (1997) J. Non-Newtonian Fluid Mech. , vol.68 , pp. 61-83
    • Rallison, J.M.1
  • 54
    • 0023093358 scopus 로고
    • Calculation of the effect of polymer additive in a converging flow
    • Ryskin, G., "Calculation of the effect of polymer additive in a converging flow," J. Fluid Mech. 178, 423-440 (1987).
    • (1987) J. Fluid Mech. , vol.178 , pp. 423-440
    • Ryskin, G.1
  • 55
    • 0026495432 scopus 로고
    • Direct mechanical measurements of the elasticity of single DNA molecules by using magnetic beads
    • Smith, S. B., L. Finzi, and C. Bustamante, "Direct mechanical measurements of the elasticity of single DNA molecules by using magnetic beads," Science 258, 1122-1126 (1992).
    • (1992) Science , vol.258 , pp. 1122-1126
    • Smith, S.B.1    Finzi, L.2    Bustamante, C.3
  • 56
    • 0032575737 scopus 로고    scopus 로고
    • Response of Flexible Polymers to a Sudden Elongational Flow
    • Smith, D. E. and S. Chu, "Response of Flexible Polymers to a Sudden Elongational Flow," Science 281, 1335-1340 (1998).
    • (1998) Science , vol.281 , pp. 1335-1340
    • Smith, D.E.1    Chu, S.2
  • 57
    • 0030291980 scopus 로고    scopus 로고
    • Stress relaxation and elastic decohesion of viscoelastic polymer solutions in extensional flow
    • Spiegelberg, S. H. and G. H. McKinley, "Stress relaxation and elastic decohesion of viscoelastic polymer solutions in extensional flow," J. Non-Newtonian Fluid Mech. 67, 49-76 (1996).
    • (1996) J. Non-Newtonian Fluid Mech. , vol.67 , pp. 49-76
    • Spiegelberg, S.H.1    McKinley, G.H.2
  • 58
  • 59
    • 34247365152 scopus 로고
    • A filament stretching device for measurement of extensional viscosity
    • Tirtaatmadja, V. and T. Sridhar "A filament stretching device for measurement of extensional viscosity," J. Rheol. 37, 1081-1102 (1993).
    • (1993) J. Rheol. , vol.37 , pp. 1081-1102
    • Tirtaatmadja, V.1    Sridhar, T.2
  • 61
    • 0028495164 scopus 로고
    • DNA extension under the action of an external force
    • Vologodskii, A., "DNA extension under the action of an external force," Macromolecules 27, 5623-5625 (1994).
    • (1994) Macromolecules , vol.27 , pp. 5623-5625
    • Vologodskii, A.1
  • 62
    • 36549095271 scopus 로고
    • On coil-stretch transitions in dilute polymer solutions
    • Wiest, J. M., L. E. Wedgewood, and R. B. Bird, "On coil-stretch transitions in dilute polymer solutions," J. Chem. Phys. 90, 587-594 (1989).
    • (1989) J. Chem. Phys. , vol.90 , pp. 587-594
    • Wiest, J.M.1    Wedgewood, L.E.2    Bird, R.B.3
  • 64
    • 36549094428 scopus 로고
    • A comparison between simulations and various approximations for Hookean dumbbells with hydrodynamic interaction
    • Zylka, W. and H. C. Öttinger, "A comparison between simulations and various approximations for Hookean dumbbells with hydrodynamic interaction," J. Chem. Phys. 90, 474-480 (1989).
    • (1989) J. Chem. Phys. , vol.90 , pp. 474-480
    • Zylka, W.1    Öttinger, H.C.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.