Two-state migration of DNA in a structured microchannel

Physical Review E - Statistical, Nonlinear, and Soft Matter Physics

Volumn 71, Issue 1, 2005, Pages

  Streek, Martin ^a   Schmid, Friederike ^a   Duong, Thanh Tu ^a   Anselmetti, Dario ^a   Ros, Alexandra ^a  

^a BIELEFELD UNIVERSITY   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

DIFFUSION CONSTANTS; GYRATION; HARMONIC SPRINGS; STRUCTURED MICROCHANNELS;

BROWNIAN MOVEMENT; COMPUTER SIMULATION; DATA REDUCTION; ELECTRIC FIELDS; LAPLACE TRANSFORMS; MICROSTRUCTURE; SCANNING ELECTRON MICROSCOPY; SCHEMATIC DIAGRAMS;

DNA;

DNA;

CHEMICAL MODEL; CHEMISTRY; COMPUTER SIMULATION; DIFFUSION; ELECTROCHEMISTRY; ELECTROMAGNETIC FIELD; ELECTROPHORESIS; EVALUATION STUDY; ISOLATION AND PURIFICATION; MICROFLUIDICS; MOTION; PROCEDURES; RADIATION RESPONSE;

COMPUTER SIMULATION; DIFFUSION; DNA; ELECTROCHEMISTRY; ELECTROMAGNETIC FIELDS; ELECTROPHORESIS; MICROFLUIDICS; MODELS, CHEMICAL; MOTION;

EID: 41349109967     PISSN: 15393755     EISSN: 15502376     Source Type: Journal    
DOI: 10.1103/PhysRevE.71.011905     Document Type: Article

References (33)

1. J.-L. Viovy, Rev. Mod. Phys. 72, 813 (2000).
2. C. S. Effenhauser, G. J. M. Bruin, and A. Paulus, Electrophoresis 18, 2203 (1997).
3. D. Schmalzing, L. Koutny, A. Adourian, P. Belgrader, P. Matsudaira, and D. Ehrlich, Proc. Natl. Acad. Sci. U.S.A. 94, 10273 (1997).
4. S. W. Turner, A. M. Perez, A. Lopez, and H. G. Craighead, J. Vac. Sci. Technol. B 16, 3835 (1998).
5. H.-P. Chou, C. Spence, A. Scherer, and S. Quake, Proc. Natl. Acad. Sci. U.S.A. 96, 11 (1999).
6. J. Han and H. G. Craighead, Science 288, 1026 (2000).
7. T. T. Duong, R. Ros, M. Streek, F. Schmid, J. Brugger, D. Anselmetti, and A. Ros, Microelectron. Eng. 67-68, 905 (2003).
8. O. Bakajin, T. A. J. Duke, J. Tegenfeldt, C.-F. Chou, S. S. Chan, R. H. Austin, and E. C. Cox, Anal. Chem. 73, 6053 (2001).
9. L. R. Huang, J. O. Tegenfeldt, J. J. Kraeft, J. C. Sturm, R. H. Austin, and E. C. Cox, Nat. Biotechnol. 20, 1048 (2002).
10. A. Ros, W. Hellmich, T. Duong, and D. Anselmetti, J. Biotech nol. 112, 65 (2004).
11. J. Han, S. W. Turner, and H. G. Craighead, Phys. Rev. Lett. 83, 1688 (1999); 86, 1394(E) (2001).
12. J. Han, S. W. Turner, and H. G. Craighead, Phys. Rev. Lett. 83, 1688 (1999); 86, 1394(E) (2001).
13. J. Han and H. G. Craighead, Anal. Chem. 74, 394 (2002).
14. F. Tessier, J. Labrie, and G. W. Slater, Macromolecules 35, 4791 (2002).
15. Z. Chen and F. A. Escobedo, Mol. Simul. 29, 417 (2003).
16. M. Streek, F. Schmid, T. T. Duong, and A. Ros, J. Biotechnol. 112, 79 (2004).
17. J. M. Deutsch, Phys. Rev. Lett. 59, 1255 (1987).
18. J. M. Deutsch, Science 240, 922 (1988).
19. M. Matsumoto and M. Doi, Mol. Simul. 12, 219 (1994).
20. H. Noguchi and M. Takasu, J. Chem. Phys. 114, 7260 (2001).
21. M. Doi and S. F. Edwards, The Theory of Polymer Dynamics (Oxford Science, New York, 1980.
22. B. Dünweg and W. Paul, Int. J. Mod. Phys. C2, 817 (1991).
23. M. Streek, "Migration of dna on a structured surface in an external field," diploma thesis, Universität Bielefeld, 2002.
24. D. E. Smith, T. T. Perkins, and S. Chu, Phys. Rev. Lett. 75, 4146 (1995).
25. E. B. Cummings, S. K. Griffiths, R. H. Nilson, and P. H. Paul, Anal. Chem. 72, 2526 (2000).
26. J. G. Santiago, Anal. Chem. 73, 2353 (2001).
27. D. Long, J.-L. Viovy, and A. Ajdari, Phys. Rev. Lett. 76, 3858 (1996).
28. E. Stellwagen, Y. Lu, and N. C. Stellwagen, Biochemistry42, 11 745 (2003).
29. X. Huang, M. J. Gordon, and R. N. Zare, Anal. Chem. 60, 1837 (1988).
30. P. D. Grossmann and J. C. Colburn,Capillary Electrophoresis, Theory and Practice: Free Solution Capillary Electrophoresis (Academic, San Diego, 1992).
31. P. Reimann, Phys. Rep. 361, 57 (2002).
32. A. Baumgärtner, in Soft Matter - Complex Materials on Mesoscopic Scales, edited by J. K. G. Dhont, G. Gompper, and D. Richter (33. IFF-Ferienkurs, Forschungszentrum Jülich, 2002, p. B3.
33. The Condor Team, 2003. Software package from www.cs.wisc.edu/condor/