-
1
-
-
15544365691
-
New methodologies for ligand-based virtual screening
-
Stahura F.L., Bajorath J. (2005) New methodologies for ligand-based virtual screening. Curr Pharm Des 11 : 1189 1202.
-
(2005)
Curr Pharm des
, vol.11
, pp. 1189-1202
-
-
Stahura, F.L.1
Bajorath, J.2
-
2
-
-
33751246188
-
Similarity-based virtual screening using 2D fingerprints
-
Willett P. (2006) Similarity-based virtual screening using 2D fingerprints. Drug Discov Today 11 : 1046 1053.
-
(2006)
Drug Discov Today
, vol.11
, pp. 1046-1053
-
-
Willett, P.1
-
3
-
-
33847207834
-
Molecular similarity analysis in virtual screening: Foundations, limitations and novel approaches
-
Eckert H., Bajorath J. (2007) Molecular similarity analysis in virtual screening: foundations, limitations and novel approaches. Drug Discov Today 12 : 225 233.
-
(2007)
Drug Discov Today
, vol.12
, pp. 225-233
-
-
Eckert, H.1
Bajorath, J.2
-
4
-
-
10244222365
-
Comparison of topological descriptors for similarity-based virtual screening using multiple bioactive reference structures
-
Hert J., Willett P., Wilton D.J., Acklin P., Azzaoui K., Jacoby E., Schuffenhauer A. (2004) Comparison of topological descriptors for similarity-based virtual screening using multiple bioactive reference structures. Org Biomol Chem 2 : 3256 3266.
-
(2004)
Org Biomol Chem
, vol.2
, pp. 3256-3266
-
-
Hert, J.1
Willett, P.2
Wilton, D.J.3
Acklin, P.4
Azzaoui, K.5
Jacoby, E.6
Schuffenhauer, A.7
-
5
-
-
0030191311
-
Stigmata: An algorithm to determine structural commonalities in diverse datasets
-
Shemetulskis N.E., Weininger D., Blankley C.J., Yang J.J., Humblet C. (1996) Stigmata: an algorithm to determine structural commonalities in diverse datasets. J Chem Inf Comput Sci 36 : 862 871.
-
(1996)
J Chem Inf Comput Sci
, vol.36
, pp. 862-871
-
-
Shemetulskis, N.E.1
Weininger, D.2
Blankley, C.J.3
Yang, J.J.4
Humblet, C.5
-
7
-
-
33749605153
-
Reverse fingerprinting, similarity searching by group fusion and fingerprint bit importance
-
Williams C. (2006) Reverse fingerprinting, similarity searching by group fusion and fingerprint bit importance. Mol Divers 10 : 311 332.
-
(2006)
Mol Divers
, vol.10
, pp. 311-332
-
-
Williams, C.1
-
8
-
-
0035324939
-
Fingerprint scaling increases the probability of identifying molecules with similar activity in virtual screening calculations
-
Xue L., Stahura F.L., Godden J.W., Bajorath J. (2001) Fingerprint scaling increases the probability of identifying molecules with similar activity in virtual screening calculations. J Chem Inf Comput Sci 41 : 746 753.
-
(2001)
J Chem Inf Comput Sci
, vol.41
, pp. 746-753
-
-
Xue, L.1
Stahura, F.L.2
Godden, J.W.3
Bajorath, J.4
-
9
-
-
0043201432
-
Profile scaling increases the similarity search performance of molecular fingerprints containing numerical descriptors and structural keys
-
Xue L., Godden J.W., Stahura F.L., Bajorath J. (2003) Profile scaling increases the similarity search performance of molecular fingerprints containing numerical descriptors and structural keys. J Chem Inf Comput Sci 43 : 1218 1225.
-
(2003)
J Chem Inf Comput Sci
, vol.43
, pp. 1218-1225
-
-
Xue, L.1
Godden, J.W.2
Stahura, F.L.3
Bajorath, J.4
-
10
-
-
0346962971
-
Structural interaction fingerprint (SIFt): A novel method for analyzing three-dimensional protein-ligand binding interactions
-
Deng Z., Chuaqui C., Singh J. (2004) Structural interaction fingerprint (SIFt): a novel method for analyzing three-dimensional protein-ligand binding interactions. J Med Chem 47 : 337 344.
-
(2004)
J Med Chem
, vol.47
, pp. 337-344
-
-
Deng, Z.1
Chuaqui, C.2
Singh, J.3
-
11
-
-
10044263239
-
Expanded interaction fingerprint method for analyzing ligand binding modes in docking and structure-based drug design
-
Kelly M.D., Mancera R.L. (2004) Expanded interaction fingerprint method for analyzing ligand binding modes in docking and structure-based drug design. J Chem Inf Comput Sci 44 : 1942 1951.
-
(2004)
J Chem Inf Comput Sci
, vol.44
, pp. 1942-1951
-
-
Kelly, M.D.1
Mancera, R.L.2
-
12
-
-
33745095576
-
Structural interaction fingerprints: A new approach to organizing, mining, analyzing and designing protein-small molecule complexes
-
Singh J., Deng Z., Narale G., Chuaqui C. (2006) Structural interaction fingerprints: a new approach to organizing, mining, analyzing and designing protein-small molecule complexes. Chem Biol Drug Des 67 : 5 12.
-
(2006)
Chem Biol Drug des
, vol.67
, pp. 5-12
-
-
Singh, J.1
Deng, Z.2
Narale, G.3
Chuaqui, C.4
-
13
-
-
34247263219
-
A common reference framework for analyzing/comparing proteins and ligands. Fingerprints for ligands and proteins (FLAP): Theory and application
-
Baroni M., Cruciani G., Sciabola S., Perruccio F., Mason J.S. (2007) A common reference framework for analyzing/comparing proteins and ligands. Fingerprints for ligands and proteins (FLAP): theory and application. J Chem Inf Model 47 : 279 294.
-
(2007)
J Chem Inf Model
, vol.47
, pp. 279-294
-
-
Baroni, M.1
Cruciani, G.2
Sciabola, S.3
Perruccio, F.4
Mason, J.S.5
-
14
-
-
56449083729
-
Ligand-target interaction-based weighing of substructures for virtual screening
-
Crisman T.J., Sisay M.T., Bajorath J. (2008) Ligand-target interaction-based weighing of substructures for virtual screening. J Chem Inf Model 48 : 1955 1964.
-
(2008)
J Chem Inf Model
, vol.48
, pp. 1955-1964
-
-
Crisman, T.J.1
Sisay, M.T.2
Bajorath, J.3
-
15
-
-
58149116803
-
Similarity searching using fingerprints of molecular fragments involved in protein-ligand interactions
-
Tan L., Lounkine E., Bajorath J. (2008) Similarity searching using fingerprints of molecular fragments involved in protein-ligand interactions. J Chem Inf Model 48 : 2308 2312.
-
(2008)
J Chem Inf Model
, vol.48
, pp. 2308-2312
-
-
Tan, L.1
Lounkine, E.2
Bajorath, J.3
-
16
-
-
67650468167
-
Utilizing target-ligand interaction information in fingerprint searching for ligands of related targets
-
Tan L., Bajorath J. (2009) Utilizing target-ligand interaction information in fingerprint searching for ligands of related targets. Chem Biol Drug Des 74 : 25 32.
-
(2009)
Chem Biol Drug des
, vol.74
, pp. 25-32
-
-
Tan, L.1
Bajorath, J.2
-
17
-
-
0033954256
-
The protein data bank
-
Berman H.M., Westbrook J., Feng Z., Gilliland G., Bhat T.N., Weissig H., Shindyalov I.N., Bourne P.E. (2000) The protein data bank. Nucleic Acids Res 28 : 235 242.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, P.E.8
-
18
-
-
13844312649
-
ZINC-a free database of commercially available compounds for virtual screening
-
Irwin J.J., Shoichet B.K. (2005) ZINC-a free database of commercially available compounds for virtual screening. J Chem Inf Model 45 : 177 182.
-
(2005)
J Chem Inf Model
, vol.45
, pp. 177-182
-
-
Irwin, J.J.1
Shoichet, B.K.2
|