메뉴 건너뛰기




Volumn , Issue , 2008, Pages 45-59

Accelerated evolution of genes of recent origin

Author keywords

[No Author keywords available]

Indexed keywords


EID: 70349379807     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1007/978-3-540-78993-2_3     Document Type: Chapter
Times cited : (4)

References (45)
  • 1
    • 24644433826 scopus 로고    scopus 로고
    • Fold usage on genomes and protein fold evolution
    • Abeln S, Deane CM (2005) Fold usage on genomes and protein fold evolution. Proteins 60:690-700
    • (2005) Proteins , vol.60 , pp. 690-700
    • Abeln, S.1    Deane, C.M.2
  • 2
    • 14544279484 scopus 로고    scopus 로고
    • Inverse relationship between evolutionary rate and age of mammalian genes
    • Albà MM, Castresana J (2005) Inverse relationship between evolutionary rate and age of mammalian genes. Mol Biol Evol 22:598-606
    • (2005) Mol Biol Evol , vol.22 , pp. 598-606
    • Albà, M.M.1    Castresana, J.2
  • 3
    • 34247488321 scopus 로고    scopus 로고
    • On homology searches by protein Blast and the characterization of the age of genes
    • Albà MM, Castresana J (2007) On homology searches by protein Blast and the characterization of the age of genes. BMC Evol Biol 7:53
    • (2007) BMC Evol Biol , vol.7 , pp. 53
    • Albà, M.M.1    Castresana, J.2
  • 4
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
    • Altschul SF et al (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25:3389-3402
    • (1997) Nucleic Acids Res , vol.25 , pp. 3389-3402
    • Altschul, S.F.1
  • 5
    • 33645241471 scopus 로고    scopus 로고
    • Recently evolved genes identified from Drosophila yakuba and D. erecta accessory gland expressed sequence tags
    • Begun DJ, Lindfors HA, Thompson ME, Holloway AK (2006) Recently evolved genes identified from Drosophila yakuba and D. erecta accessory gland expressed sequence tags. Genetics 172:1675-1681
    • (2006) Genetics , vol.172 , pp. 1675-1681
    • Begun, D.J.1    Lindfors, H.A.2    Thompson, M.E.3    Holloway, A.K.4
  • 6
    • 34250305146 scopus 로고    scopus 로고
    • Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
    • Birney E et al (2007) Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. Nature 447:799-816
    • (2007) Nature , vol.447 , pp. 799-816
    • Birney, E.1
  • 7
    • 33745616793 scopus 로고    scopus 로고
    • Accelerated evolutionary rate may be responsible for the emergence of lineage-specific genes in ascomycota
    • Cai JJ, Woo PC, Lau SK, Smith DK, Yuen KY (2006) Accelerated evolutionary rate may be responsible for the emergence of lineage-specific genes in ascomycota. J Mol Evol 63:1-11
    • (2006) J Mol Evol , vol.63 , pp. 1-11
    • Cai, J.J.1    Woo, P.C.2    Lau, S.K.3    Smith, D.K.4    Yuen, K.Y.5
  • 8
    • 0030970280 scopus 로고    scopus 로고
    • Evolution of antifreeze glycoprotein gene from a trypsinogen gene in Antarctic notothenioid fish
    • Chen L, De Vries AL, Cheng CH (1997) Evolution of antifreeze glycoprotein gene from a trypsinogen gene in Antarctic notothenioid fish. Proc Natl Acad Sci USA 94:3811-3816
    • (1997) Proc Natl Acad Sci USA , vol.94 , pp. 3811-3816
    • Chen, L.1    De Vries, A.L.2    Cheng, C.H.3
  • 9
    • 33749014910 scopus 로고    scopus 로고
    • Evolution of protein structural classes and protein sequence families
    • Choi IG, Kim SH (2006) Evolution of protein structural classes and protein sequence families. Proc Natl Acad Sci USA 103:14056-14061
    • (2006) Proc Natl Acad Sci USA , vol.103 , pp. 14056-14061
    • Choi, I.G.1    Kim, S.H.2
  • 10
    • 37648999313 scopus 로고    scopus 로고
    • Distinguishing protein-coding and noncoding genes in the human genome
    • Clamp M et al (2007) Distinguishing protein-coding and noncoding genes in the human genome. Proc Natl Acad Sci USA 04:19428-33
    • (2007) Proc Natl Acad Sci USA , vol.4 , pp. 19428-19433
    • Clamp, M.1
  • 11
    • 47149117454 scopus 로고    scopus 로고
    • Evolution of genes and genomes on the Drosophila phylogeny
    • Clark AG et al (2007) Evolution of genes and genomes on the Drosophila phylogeny. Nature 450:203-218
    • (2007) Nature , vol.450 , pp. 203-218
    • Clark, A.G.1
  • 12
    • 3042569657 scopus 로고    scopus 로고
    • Bacterial genomes as new gene homes: The genealogy of ORFans in E. coli
    • Daubin V, Ochman H (2004) Bacterial genomes as new gene homes: the genealogy of ORFans in E. coli. Genome Res 14:1036-1042
    • (2004) Genome Res , vol.14 , pp. 1036-1042
    • Daubin, V.1    Ochman, H.2
  • 13
    • 0033579939 scopus 로고    scopus 로고
    • A human minor histocompatibility antigen specific for B cell acute lymphoblastic leukemia
    • Dolstra H et al (1999) A human minor histocompatibility antigen specific for B cell acute lymphoblastic leukemia. J Exp Med 189:301-308
    • (1999) J Exp Med , vol.189 , pp. 301-308
    • Dolstra, H.1
  • 14
    • 0142028990 scopus 로고    scopus 로고
    • An evolutionary analysis of orphan genes in Drosophila
    • Domazet-Loso T, Tautz D (2003) An evolutionary analysis of orphan genes in Drosophila. Genome Res 13:2213-2219
    • (2003) Genome Res , vol.13 , pp. 2213-2219
    • Domazet-Loso, T.1    Tautz, D.2
  • 15
    • 35748936426 scopus 로고    scopus 로고
    • A phylostratigraphy approach to uncover the genomic history of major adaptations in metazoan lineages
    • Domazet-Loso T, Brajkovic J, Tautz D (2007) A phylostratigraphy approach to uncover the genomic history of major adaptations in metazoan lineages. Trends Genet 23:533-9
    • (2007) Trends Genet , vol.23 , pp. 533-539
    • Domazet-Loso, T.1    Brajkovic, J.2    Tautz, D.3
  • 16
    • 0033580453 scopus 로고    scopus 로고
    • TRAG-3, a novel gene, isolated from a taxol-resistant ovarian carcinoma cell line
    • Duan Z, Feller AJ, Toh HC, Makastorsis T, Seiden MV (1999) TRAG-3, a novel gene, isolated from a taxol-resistant ovarian carcinoma cell line. Gene 229:75-81
    • (1999) Gene , vol.229 , pp. 75-81
    • Duan, Z.1    Feller, A.J.2    Toh, H.C.3    Makastorsis, T.4    Seiden, M.V.5
  • 17
    • 28944445062 scopus 로고    scopus 로고
    • The "inverse relationship between evolutionary rate and age of mammalian genes" is an artifact of increased genetic distance with rate of evolution and time of divergence
    • Elhaik E, Sabath N, Graur D (2006) The "inverse relationship between evolutionary rate and age of mammalian genes" is an artifact of increased genetic distance with rate of evolution and time of divergence. Mol Biol Evol 23:1-3
    • (2006) Mol Biol Evol , vol.23 , pp. 1-3
    • Elhaik, E.1    Sabath, N.2    Graur, D.3
  • 18
    • 38549176691 scopus 로고    scopus 로고
    • Ensembl 2008
    • Flicek P et al (2007) Ensembl 2008. Nucleic Acids Res 36:0707-14
    • (2007) Nucleic Acids Res , vol.36 , pp. 0707-0714
    • Flicek, P.1
  • 19
    • 33646483032 scopus 로고    scopus 로고
    • The abundance of short proteins in the mammalian proteome
    • Frith MC et al (2006) The abundance of short proteins in the mammalian proteome. PLoS Genet 2:e52
    • (2006) PLoS Genet , vol.2
    • Frith, M.C.1
  • 20
    • 33747019241 scopus 로고    scopus 로고
    • Differences in the evolutionary history of disease genes affected by dominant or recessive mutations
    • Furney SJ, Alba MM, Lopez-Bigas N (2006) Differences in the evolutionary history of disease genes affected by dominant or recessive mutations. BMC Genomics 7:165
    • (2006) BMC Genomics , vol.7 , pp. 165
    • Furney, S.J.1    Alba, M.M.2    Lopez-Bigas, N.3
  • 21
    • 34247352040 scopus 로고    scopus 로고
    • Evolutionary and biomedical insights from the rhesus macaque genome
    • Gibbs RA et al (2007) Evolutionary and biomedical insights from the rhesus macaque genome. Science 316:222-234
    • (2007) Science , vol.316 , pp. 222-234
    • Gibbs, R.A.1
  • 22
    • 27544465780 scopus 로고    scopus 로고
    • CoGenT + +: An extensive and extensible data environment for computational genomics
    • Goldovsky L et al (2005) CoGenT + +: an extensive and extensible data environment for computational genomics. Bioinformatics 21:3806-3810
    • (2005) Bioinformatics , vol.21 , pp. 3806-3810
    • Goldovsky, L.1
  • 23
    • 0346801873 scopus 로고    scopus 로고
    • The Gene Ontology (GO) database and informatics resource
    • Harris MA et al (2004) The Gene Ontology (GO) database and informatics resource. Nucleic Acids Res 32:D258-261
    • (2004) Nucleic Acids Res , vol.32
    • Harris, M.A.1
  • 24
    • 0033565762 scopus 로고    scopus 로고
    • Do essential genes evolve slowly?
    • Hurst LD, Smith NG (1999) Do essential genes evolve slowly? Curr Biol 9:747-750
    • (1999) Curr Biol , vol.9 , pp. 747-750
    • Hurst, L.D.1    Smith, N.G.2
  • 25
    • 0030022462 scopus 로고    scopus 로고
    • Evolution of gene families and relationship with organismal evolution: Rapid divergence of tissue-specific genes in the early evolution of chordates
    • Iwabe N, Kuma K, Miyata T (1996) Evolution of gene families and relationship with organismal evolution: rapid divergence of tissue-specific genes in the early evolution of chordates. Mol Biol Evol 13:483-493
    • (1996) Mol Biol Evol , vol.13 , pp. 483-493
    • Iwabe, N.1    Kuma, K.2    Miyata, T.3
  • 26
    • 0035807336 scopus 로고    scopus 로고
    • Positive selection of a gene family during the emergence of humans and African apes
    • Johnson ME et al (2001) Positive selection of a gene family during the emergence of humans and African apes. Nature 413:514-519
    • (2001) Nature , vol.413 , pp. 514-519
    • Johnson, M.E.1
  • 27
    • 12144290967 scopus 로고    scopus 로고
    • The SPANX gene family of cancer/testis-specific antigens: Rapid evolution and amplification in African great apes and hominids
    • Kouprina N et al (2004) The SPANX gene family of cancer/testis-specific antigens: rapid evolution and amplification in African great apes and hominids. Proc Natl Acad Sci USA 101:3077-3082
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 3077-3082
    • Kouprina, N.1
  • 28
    • 2042437650 scopus 로고    scopus 로고
    • Initial sequencing and analysis of the human genome
    • Lander ES et al (2001) Initial sequencing and analysis of the human genome. Nature 409:860-921
    • (2001) Nature , vol.409 , pp. 860-921
    • Lander, E.S.1
  • 29
    • 33745585334 scopus 로고    scopus 로고
    • Novel genes derived from noncoding DNA in Drosophila melanogaster are frequently X-linked and exhibit testis-biased expression
    • Levine MT, Jones CD, Kern AD, Lindfors HA, Begun DJ (2006) Novel genes derived from noncoding DNA in Drosophila melanogaster are frequently X-linked and exhibit testis-biased expression. Proc Natl Acad Sci USA 103:9935-9939
    • (2006) Proc Natl Acad Sci USA , vol.103 , pp. 9935-9939
    • Levine, M.T.1    Jones, C.D.2    Kern, A.D.3    Lindfors, H.A.4    Begun, D.J.5
  • 30
    • 0034634395 scopus 로고    scopus 로고
    • The evolutionary fate and consequences of duplicate genes
    • Lynch M, Conery JS (2000) The evolutionary fate and consequences of duplicate genes. Science 290:1151-1155
    • (2000) Science , vol.290 , pp. 1151-1155
    • Lynch, M.1    Conery, J.S.2
  • 32
    • 0035193659 scopus 로고    scopus 로고
    • Divergence pattern of animal gene families and relationship with the Cambrian explosion
    • Miyata T, Suga H (2001) Divergence pattern of animal gene families and relationship with the Cambrian explosion. BioEssays 23:1018-1027
    • (2001) BioEssays , vol.23 , pp. 1018-1027
    • Miyata, T.1    Suga, H.2
  • 33
    • 0032506534 scopus 로고    scopus 로고
    • Selective sweep of a newly evolved sperm-specific gene in Drosophila
    • Nurminsky DI, Nurminskaya MV, De Aguiar D, Hartl DL (1998) Selective sweep of a newly evolved sperm-specific gene in Drosophila. Nature 396:572-575
    • (1998) Nature , vol.396 , pp. 572-575
    • Nurminsky, D.I.1    Nurminskaya, M.V.2    De Aguiar, D.3    Hartl, D.L.4
  • 34
    • 0021323335 scopus 로고
    • Birth of a unique enzyme from an alternative reading frame of the preexisted, internally repetitious coding sequence
    • Ohno S (1984) Birth of a unique enzyme from an alternative reading frame of the preexisted, internally repetitious coding sequence. Proc Natl Acad Sci USA 81:2421-2425
    • (1984) Proc Natl Acad Sci USA , vol.81 , pp. 2421-2425
    • Ohno, S.1
  • 35
    • 33750962721 scopus 로고    scopus 로고
    • Frequent appearance of novel protein-coding sequences by frameshift translation
    • Okamura K, Feuk L, Marques-Bonet T, Navarro A, Scherer SW (2006) Frequent appearance of novel protein-coding sequences by frameshift translation. Genomics 88:690-697
    • (2006) Genomics , vol.88 , pp. 690-697
    • Okamura, K.1    Feuk, L.2    Marques-Bonet, T.3    Navarro, A.4    Scherer, S.W.5
  • 36
    • 33646182934 scopus 로고    scopus 로고
    • An integrated view of protein evolution
    • Pal C, Papp B, Lercher MJ (2006) An integrated view of protein evolution. Nat Rev Genet 7:337-348
    • (2006) Nat Rev Genet , vol.7 , pp. 337-348
    • Pal, C.1    Papp, B.2    Lercher, M.J.3
  • 37
    • 0035198723 scopus 로고    scopus 로고
    • Dermcidin: A novel human antibiotic peptide secreted by sweat glands
    • Schittek B et al (2001) Dermcidin: a novel human antibiotic peptide secreted by sweat glands. Nat Immunol 2:1133-1137
    • (2001) Nat Immunol , vol.2 , pp. 1133-1137
    • Schittek, B.1
  • 38
    • 0036205377 scopus 로고    scopus 로고
    • TREE-PUZZLE: Maximum likelihood phylogenetic analysis using quartets and parallel computing
    • Schmidt HA, Strimmer K, Vingron M, Von Haeseler A (2002) TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing. Bioinformatics 18:502-504
    • (2002) Bioinformatics , vol.18 , pp. 502-504
    • Schmidt, H.A.1    Strimmer, K.2    Vingron, M.3    Von Haeseler, A.4
  • 39
    • 3042548848 scopus 로고    scopus 로고
    • Estimating absolute rates of synonymous and nonsynonymous nucleotide substitution in order to characterize natural selection and date species divergences
    • Seo TK, Kishino H, Thorne JL (2004) Estimating absolute rates of synonymous and nonsynonymous nucleotide substitution in order to characterize natural selection and date species divergences. Mol Biol Evol 21:1201-1213
    • (2004) Mol Biol Evol , vol.21 , pp. 1201-1213
    • Seo, T.K.1    Kishino, H.2    Thorne, J.L.3
  • 40
    • 0031857684 scopus 로고    scopus 로고
    • Rose: Generating sequence families
    • Stoye J, Evers D, Meyer F (1998) Rose: generating sequence families. Bioinformatics 14:157-163
    • (1998) Bioinformatics , vol.14 , pp. 157-163
    • Stoye, J.1    Evers, D.2    Meyer, F.3
  • 41
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673-4680
    • (1994) Nucleic Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 42
    • 1542563409 scopus 로고    scopus 로고
    • Initial sequencing and comparative analysis of the mouse genome
    • Waterston RH et al (2002) Initial sequencing and comparative analysis of the mouse genome. Nature 420:520-562
    • (2002) Nature , vol.420 , pp. 520-562
    • Waterston, R.H.1
  • 43
    • 0029901640 scopus 로고    scopus 로고
    • Analysis of compositionally biased regions in sequence databases
    • Wootton JC, Federhen S (1996) Analysis of compositionally biased regions in sequence databases. Methods Enzymol 266:554-571
    • (1996) Methods Enzymol , vol.266 , pp. 554-571
    • Wootton, J.C.1    Federhen, S.2
  • 44
    • 34547803197 scopus 로고    scopus 로고
    • PAML 4: Phylogenetic analysis by maximum likelihood
    • Yang Z (2007) PAML 4: phylogenetic analysis by maximum likelihood. Mol Biol Evol 24:1586-1591
    • (2007) Mol Biol Evol , vol.24 , pp. 1586-1591
    • Yang, Z.1
  • 45
    • 34247253767 scopus 로고    scopus 로고
    • Identification and characterization of insect-specific proteins by genome data analysis
    • Zhang G et al (2007) Identification and characterization of insect-specific proteins by genome data analysis. BMC Genomics 8:93
    • (2007) BMC Genomics , vol.8 , pp. 93
    • Zhang, G.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.