메뉴 건너뛰기




Volumn 2, Issue , 2009, Pages

Evaluation of a new high-dimensional miRNA profiling platform

Author keywords

[No Author keywords available]

Indexed keywords

MICRORNA; RNA;

EID: 70349260261     PISSN: None     EISSN: 17558794     Source Type: Journal    
DOI: 10.1186/1755-8794-2-57     Document Type: Article
Times cited : (22)

References (44)
  • 1
    • 0027751663 scopus 로고
    • The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14
    • 10.1016/0092-8674(93)90529-Y. 8252621
    • The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14. RC Lee RL Feinbaum V Ambros, Cell 1993 75 843 854 10.1016/0092-8674(93)90529-Y 8252621
    • (1993) Cell , vol.75 , pp. 843-854
    • Lee, R.C.1    Feinbaum, R.L.2    Ambros, V.3
  • 2
    • 33644768174 scopus 로고    scopus 로고
    • Control of translation and mRNA degradation by miRNAs and siRNAs
    • 10.1101/gad.1399806. 16510870
    • Control of translation and mRNA degradation by miRNAs and siRNAs. MA Valencia-Sanchez J Liu GJ Hannon R Parker, Genes Dev 2006 20 515 524 10.1101/gad.1399806 16510870
    • (2006) Genes Dev , vol.20 , pp. 515-524
    • Valencia-Sanchez, M.A.1    Liu, J.2    Hannon, G.J.3    Parker, R.4
  • 3
    • 24644446398 scopus 로고    scopus 로고
    • Ribo-gnome: The big world of small RNAs
    • 10.1126/science.1111444. 16141061
    • Ribo-gnome: the big world of small RNAs. PD Zamore B Haley, Science 2005 309 1519 1524 10.1126/science.1111444 16141061
    • (2005) Science , vol.309 , pp. 1519-1524
    • Zamore, P.D.1    Haley, B.2
  • 4
    • 15944402920 scopus 로고    scopus 로고
    • Small regulatory RNAs in mammals
    • 10.1093/hmg/ddi101. 15809264
    • Small regulatory RNAs in mammals. JS Mattick IV Makunin, Hum Mol Genet 2005 14 Spec No 1 121 132 10.1093/hmg/ddi101 15809264
    • (2005) Hum Mol Genet , vol.14 , Issue.SPEC NO 1 , pp. 18121-132
    • Mattick, J.S.1    Makunin, I.V.2
  • 5
    • 38349169664 scopus 로고    scopus 로고
    • Mechanisms of post-transcriptional regulation by microRNAs: Are the answers in sight?
    • 10.1038/nrg2290. 18197166
    • Mechanisms of post-transcriptional regulation by microRNAs: are the answers in sight? W Filipowicz SN Bhattacharyya N Sonenberg, Nat Rev Genet 2008 9 102 114 10.1038/nrg2290 18197166
    • (2008) Nat Rev Genet , vol.9 , pp. 102-114
    • Filipowicz, W.1    Bhattacharyya, S.N.2    Sonenberg, N.3
  • 6
    • 11844278458 scopus 로고    scopus 로고
    • Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets
    • 10.1016/j.cell.2004.12.035. 15652477
    • Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets. BP Lewis CB Burge DP Bartel, Cell 2005 120 15 20 10.1016/j.cell.2004.12.035 15652477
    • (2005) Cell , vol.120 , pp. 15-20
    • Lewis, B.P.1    Burge, C.B.2    Bartel, D.P.3
  • 7
    • 11844262661 scopus 로고    scopus 로고
    • Phylogenetic shadowing and computational identification of human microRNA genes
    • 10.1016/j.cell.2004.12.031. 15652478
    • Phylogenetic shadowing and computational identification of human microRNA genes. E Berezikov V Guryev J van de Belt E Wienholds RH Plasterk E Cuppen, Cell 2005 120 21 24 10.1016/j.cell.2004.12.031 15652478
    • (2005) Cell , vol.120 , pp. 21-24
    • Berezikov, E.1    Guryev, V.2    De Van, B.J.3    Wienholds, E.4    Plasterk, R.H.5    Cuppen, E.6
  • 8
    • 55449121696 scopus 로고    scopus 로고
    • Revealing posttranscriptional regulatory elements through network-level conservation
    • 10.1371/journal.pcbi.0010069. 16355253
    • Revealing posttranscriptional regulatory elements through network-level conservation. CS Chan O Elemento S Tavazoie, PLoS Comput Biol 2005 1 69 10.1371/journal.pcbi.0010069 16355253
    • (2005) PLoS Comput Biol , vol.1 , pp. 569
    • Chan, C.S.1    Elemento, O.2    Tavazoie, S.3
  • 10
    • 17444430392 scopus 로고    scopus 로고
    • MicroRNA-directed phasing during trans-acting siRNA biogenesis in plants
    • 10.1016/j.cell.2005.04.004. 15851028
    • microRNA-directed phasing during trans-acting siRNA biogenesis in plants. E Allen Z Xie AM Gustafson JC Carrington, Cell 2005 121 207 221 10.1016/j.cell.2005.04.004 15851028
    • (2005) Cell , vol.121 , pp. 207-221
    • Allen, E.1    Xie, Z.2    Gustafson, A.M.3    Carrington, J.C.4
  • 11
    • 33645294070 scopus 로고    scopus 로고
    • Oncomirs - MicroRNAs with a role in cancer
    • 10.1038/nrc1840. 16557279
    • Oncomirs - microRNAs with a role in cancer. A Esquela-Kerscher FJ Slack, Nat Rev Cancer 2006 6 259 269 10.1038/nrc1840 16557279
    • (2006) Nat Rev Cancer , vol.6 , pp. 259-269
    • Esquela-Kerscher, A.1    Slack, F.J.2
  • 12
    • 24144494563 scopus 로고    scopus 로고
    • The let-7 MicroRNA family members mir-48, mir-84, and mir-241 function together to regulate developmental timing in Caenorhabditis elegans
    • 10.1016/j.devcel.2005.07.009. 16139228
    • The let-7 MicroRNA family members mir-48, mir-84, and mir-241 function together to regulate developmental timing in Caenorhabditis elegans. AL Abbott E Alvarez-Saavedra EA Miska NC Lau DP Bartel HR Horvitz V Ambros, Dev Cell 2005 9 403 414 10.1016/j.devcel.2005.07.009 16139228
    • (2005) Dev Cell , vol.9 , pp. 403-414
    • Abbott, A.L.1    Alvarez-Saavedra, E.2    Miska, E.A.3    Lau, N.C.4    Bartel, D.P.5    Horvitz, H.R.6    Ambros, V.7
  • 13
    • 33751396935 scopus 로고    scopus 로고
    • Dicer1 expression in preimplantation mouse embryos: Involvement of Oct3/4 transcription at the blastocyst stage
    • 10.1016/j.bbrc.2006.11.009. 17113034
    • Dicer1 expression in preimplantation mouse embryos: Involvement of Oct3/4 transcription at the blastocyst stage. XS Cui XH Shen NH Kim, Biochem Biophys Res Commun 2007 352 231 236 10.1016/j.bbrc.2006.11.009 17113034
    • (2007) Biochem Biophys Res Commun , vol.352 , pp. 231-236
    • Cui, X.S.1    Shen, X.H.2    Kim, N.H.3
  • 15
    • 29644439230 scopus 로고    scopus 로고
    • Physiological identification of human transcripts translationally regulated by a specific microRNA
    • 10.1093/hmg/ddi397. 16239240
    • Physiological identification of human transcripts translationally regulated by a specific microRNA. M Nakamoto P Jin WT O'Donnell ST Warren, Hum Mol Genet 2005 14 3813 3821 10.1093/hmg/ddi397 16239240
    • (2005) Hum Mol Genet , vol.14 , pp. 3813-3821
    • Nakamoto, M.1    Jin, P.2    O'Donnell, W.T.3    Warren, S.T.4
  • 17
    • 34447318648 scopus 로고    scopus 로고
    • MicroRNAs are aberrantly expressed in hypertrophic heart: Do they play a role in cardiac hypertrophy?
    • 10.2353/ajpath.2007.061170. 17525252
    • MicroRNAs are aberrantly expressed in hypertrophic heart: do they play a role in cardiac hypertrophy? Y Cheng R Ji J Yue J Yang X Liu H Chen DB Dean C Zhang, Am J Pathol 2007 170 1831 1840 10.2353/ajpath.2007.061170 17525252
    • (2007) Am J Pathol , vol.170 , pp. 1831-1840
    • Cheng, Y.1    Ji, R.2    Yue, J.3    Yang, J.4    Liu, X.5    Chen, H.6    Dean, D.B.7    Zhang, C.8
  • 18
    • 38349097919 scopus 로고    scopus 로고
    • MiRFinder: An improved approach and software implementation for genome-wide fast microRNA precursor scans
    • 10.1186/1471-2105-8-341. 17868480
    • MiRFinder: an improved approach and software implementation for genome-wide fast microRNA precursor scans. TH Huang B Fan MF Rothschild ZL Hu K Li SH Zhao, BMC Bioinformatics 2007 8 341 10.1186/1471-2105-8-341 17868480
    • (2007) BMC Bioinformatics , vol.8 , pp. 341
    • Huang, T.H.1    Fan, B.2    Rothschild, M.F.3    Hu, Z.L.4    Li, K.5    Zhao, S.H.6
  • 19
    • 35548995316 scopus 로고    scopus 로고
    • Downregulation of microRNAs-143 and -145 in B-cell malignancies
    • 10.1111/j.1349-7006.2007.00618.x. 17892514
    • Downregulation of microRNAs-143 and -145 in B-cell malignancies. Y Akao Y Nakagawa Y Kitade T Kinoshita T Naoe, Cancer Sci 2007 98 1914 1920 10.1111/j.1349-7006.2007.00618.x 17892514
    • (2007) Cancer Sci , vol.98 , pp. 1914-1920
    • Akao, Y.1    Nakagawa, Y.2    Kitade, Y.3    Kinoshita, T.4    Naoe, T.5
  • 22
    • 7044285911 scopus 로고    scopus 로고
    • Probing microRNAs with microarrays: Tissue specificity and functional inference
    • 10.1261/rna.7119904. 15496526
    • Probing microRNAs with microarrays: tissue specificity and functional inference. T Babak W Zhang Q Morris BJ Blencowe TR Hughes, RNA 2004 10 1813 1819 10.1261/rna.7119904 15496526
    • (2004) RNA , vol.10 , pp. 1813-1819
    • Babak, T.1    Zhang, W.2    Morris, Q.3    Blencowe, B.J.4    Hughes, T.R.5
  • 23
    • 19944412146 scopus 로고    scopus 로고
    • MicroRNA expression detected by oligonucleotide microarrays: System establishment and expression profiling in human tissues
    • 10.1101/gr.2845604. 15574827
    • MicroRNA expression detected by oligonucleotide microarrays: system establishment and expression profiling in human tissues. O Barad E Meiri A Avniel R Aharonov A Barzilai I Bentwich U Einav S Gilad P Hurban Y Karov, et al. Genome Res 2004 14 2486 2494 10.1101/gr.2845604 15574827
    • (2004) Genome Res , vol.14 , pp. 2486-2494
    • Barad, O.1    Meiri, E.2    Avniel, A.3    Aharonov, R.4    Barzilai, A.5    Bentwich, I.6    Einav, U.7    Gilad, S.8    Hurban, P.9    Karov, Y.10
  • 24
    • 13944260434 scopus 로고    scopus 로고
    • Microarray profiling of microRNAs reveals frequent coexpression with neighboring miRNAs and host genes
    • 10.1261/rna.7240905. 15701730
    • Microarray profiling of microRNAs reveals frequent coexpression with neighboring miRNAs and host genes. S Baskerville DP Bartel, RNA 2005 11 241 247 10.1261/rna.7240905 15701730
    • (2005) RNA , vol.11 , pp. 241-247
    • Baskerville, S.1    Bartel, D.P.2
  • 26
    • 30844459069 scopus 로고    scopus 로고
    • Rational probe optimization and enhanced detection strategy for microRNAs using microarrays
    • 17114923
    • Rational probe optimization and enhanced detection strategy for microRNAs using microarrays. LA Goff M Yang J Bowers RC Getts RW Padgett RP Hart, RNA Biol 2005 2 93 100 17114923
    • (2005) RNA Biol , vol.2 , pp. 93-100
    • Goff, L.A.1    Yang, M.2    Bowers, J.3    Getts, R.C.4    Padgett, R.W.5    Hart, R.P.6
  • 30
    • 26944467896 scopus 로고    scopus 로고
    • Illumina, Inc
    • 10.2217/14622416.6.7.777. 16207153
    • Illumina, Inc. FJ Steemers KL Gunderson, Pharmacogenomics 2005 6 777 782 10.2217/14622416.6.7.777 16207153
    • (2005) Pharmacogenomics , vol.6 , pp. 777-782
    • Steemers, F.J.1    Gunderson, K.L.2
  • 31
    • 84908219488 scopus 로고
    • Statistical methods for assessing agreement between two methods of clinical measurement
    • 2868172
    • Statistical methods for assessing agreement between two methods of clinical measurement. JM Bland DG Altman, Lancet 1986 1 307 310 2868172
    • (1986) Lancet , vol.1 , pp. 307-310
    • Bland, J.M.1    Altman, D.G.2
  • 32
    • 0036376993 scopus 로고    scopus 로고
    • Statistical Methods for Identifying Differentially Expressed Genes in Replicated Cdna Microarray Experiments
    • Statistical Methods for Identifying Differentially Expressed Genes in Replicated Cdna Microarray Experiments. S Dudoit Y Yang M Callow T Speed, Statistica Sinica 2002 12 111 139
    • (2002) Statistica Sinica , vol.12 , pp. 111-139
    • Dudoit, S.1    Yang, Y.2    Callow, M.3    Speed, T.4
  • 33
    • 8844271685 scopus 로고    scopus 로고
    • Faster cyclic loess: Normalizing RNA arrays via linear models
    • 10.1093/bioinformatics/bth327. 15166021
    • Faster cyclic loess: normalizing RNA arrays via linear models. KV Ballman DE Grill AL Oberg TM Therneau, Bioinformatics 2004 20 2778 2786 10.1093/bioinformatics/bth327 15166021
    • (2004) Bioinformatics , vol.20 , pp. 2778-2786
    • Ballman, K.V.1    Grill, D.E.2    Oberg, A.L.3    Therneau, T.M.4
  • 34
    • 0037316303 scopus 로고    scopus 로고
    • A comparison of normalization methods for high density oligonucleotide array data based on variance and bias
    • 10.1093/bioinformatics/19.2.185. 12538238
    • A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. BM Bolstad RA Irizarry M Astrand TP Speed, Bioinformatics 2003 19 185 193 10.1093/bioinformatics/19.2.185 12538238
    • (2003) Bioinformatics , vol.19 , pp. 185-193
    • Bolstad, B.M.1    Irizarry, R.A.2    Astrand, M.3    Speed, T.P.4
  • 35
    • 16344379368 scopus 로고    scopus 로고
    • Normalization of two-channel microarray experiments: A semiparametric approach
    • 10.1093/bioinformatics/bti105. 15513988
    • Normalization of two-channel microarray experiments: a semiparametric approach. JE Eckel C Gennings TM Therneau LD Burgoon DR Boverhof TR Zacharewski, Bioinformatics 2005 21 1078 1083 10.1093/bioinformatics/bti105 15513988
    • (2005) Bioinformatics , vol.21 , pp. 1078-1083
    • Eckel, J.E.1    Gennings, C.2    Therneau, T.M.3    Burgoon, L.D.4    Boverhof, D.R.5    Zacharewski, T.R.6
  • 36
    • 1342294092 scopus 로고    scopus 로고
    • Normalization for cDNA microarray data: A robust composite method addressing single and multiple slide systematic variation
    • 10.1093/nar/30.4.e15. 11842121
    • Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation. YH Yang S Dudoit P Luu DM Lin V Peng J Ngai TP Speed, Nucleic Acids Res 2002 30 15 10.1093/nar/30.4.e15 11842121
    • (2002) Nucleic Acids Res , vol.30 , pp. 515
    • Yang, Y.H.1    Dudoit, S.2    Luu, P.3    Lin, D.M.4    Peng, V.5    Ngai, J.6    Speed, T.P.7
  • 37
    • 0037188875 scopus 로고    scopus 로고
    • Normalization and analysis of DNA microarray data by self-consistency and local regression
    • 10.1186/gb-2002-3-7-research0037. 12184811
    • Normalization and analysis of DNA microarray data by self-consistency and local regression. TB Kepler L Crosby KT Morgan, Genome Biol 2002 3 ESEARCH0037 10.1186/gb-2002-3-7-research0037 12184811
    • (2002) Genome Biol , vol.3
    • Kepler, T.B.1    Crosby, L.2    Morgan, K.T.3
  • 38
    • 0037317033 scopus 로고    scopus 로고
    • A study of accuracy and precision in oligonucleotide arrays: Extracting more signal at large concentrations
    • 10.1093/bioinformatics/19.2.178. 12538237
    • A study of accuracy and precision in oligonucleotide arrays: extracting more signal at large concentrations. F Naef ND Socci M Magnasco, Bioinformatics 2003 19 178 184 10.1093/bioinformatics/19.2.178 12538237
    • (2003) Bioinformatics , vol.19 , pp. 178-184
    • Naef, F.1    Socci, N.D.2    Magnasco, M.3
  • 39
    • 46949098160 scopus 로고    scopus 로고
    • Comparison of normalization methods with microRNA microarray
    • 10.1016/j.ygeno.2008.04.002. 18514480
    • Comparison of normalization methods with microRNA microarray. YJ Hua K Tu ZY Tang YX Li HS Xiao, Genomics 2008 92 122 128 10.1016/j.ygeno.2008.04.002 18514480
    • (2008) Genomics , vol.92 , pp. 122-128
    • Hua, Y.J.1    Tu, K.2    Tang, Z.Y.3    Li, Y.X.4    Xiao, H.S.5
  • 42
    • 70349258646 scopus 로고    scopus 로고
    • A modified LOESS normalization applied to microRNA arrays: A comparative evaluation
    • 19628505
    • A modified LOESS normalization applied to microRNA arrays: a comparative evaluation. D Risso MS Massa M Chiogna C Romualdi, Bioinformatics 2009 19628505
    • (2009) Bioinformatics
    • Risso, D.1    Massa, M.S.2    Chiogna, M.3    Romualdi, C.4
  • 44
    • 0037225727 scopus 로고    scopus 로고
    • Contrast normalization of oligonucleotide arrays
    • 10.1089/106652703763255697. 12676053
    • Contrast normalization of oligonucleotide arrays. M Astrand, J Comput Biol 2003 10 95 102 10.1089/106652703763255697 12676053
    • (2003) J Comput Biol , vol.10 , pp. 95-102
    • Astrand, M.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.