Use of specific PCR-based molecular markers for discrimination, rapid analysis of purity and identification of six fragrant rice varieties

International Journal of Food Science and Technology

Volumn 44, Issue 10, 2009, Pages 1959-1965

  Minh, Ho Ky Quang ^a   Rakshit, Sudip Kumar ^a  

^a ASIAN INSTITUTE OF TECHNOLOGY   (Thailand)

Author keywords

Deoxyribonucleic acid; Electrophoresis; Flavour; Polymerase chain reaction; Quality; Rice

Indexed keywords

EID: 70349213987     PISSN: 09505423     EISSN: 13652621     Source Type: Journal    
DOI: 10.1111/j.1365-2621.2009.02013.x     Document Type: Article

References (29)

1. Akagi, H., Yokozeki, Y., Inagaki, A. Fujimura, T. (1996). Microsatellite DNA markers for rice chromosomes. Theoretical and Applied Genetics, 93, 1071 1077.
2. Akagi, H., Yokozeki, Y., Inagaki, A. Fujimura, T. (1997). Highly polymorphic microsatellites of rice consist of AT repeats, and a classification of closely related cultivars with these microsatellite loci. Theoretical and Applied Genetics, 94, 61 67.
3. Bligh, H.F.J., Blackhall, N.W., Edwards, K.J. McClung, A.M. (1999). Using amplified fragment length polymorphisms and simple sequence length polymorphisms to identify cultivars of brown and white milled rice. Crop Science, 39, 1715 1721.
4. Bradbury, L., Fitzgerald, T., Henry, R., Qingsheng, J. Daniel, L. (2005a). The gene for fragrance in rice. Plant Biotechnology Journal, 3, 363 370.
5. Bradbury, L., Henry, R., Qingsheng, J., Reinke, R. Daniel, L. (2005b). A perfect marker for fragrance genotyping in rice. Molecular Breeding, 16, 279 283.
6. Buttery, R.G., Ling, L.C., Juliano, B.O. Turnbaugh, J.G. (1983). Cooked rice aroma and 2-acetyl-1-pyrroline. Journal of Agricultural and Food Chemistry, 31, 823 826.
7. Chen, X., Temnykh, S., Xu, Y., Cho, Y.G. McCouch, S.R. (1997). Development of a microsatellite framework map providing genome-wide coverage in rice (Oryza sativa L.). Theoretical and Applied Genetics, 95, 553 567.
8. Choudhury, P.R., Kohli, S., Srinivasan, K., Mohapatra, T. Sharma, R.P. (2001). Identification and classification of aromatic rices based on DNA fingerprinting. Euphytica, 118, 243 251.
9. Cordeiro, G.M., Mandy, J.C., Henry, R. Reinke, R. (2002). Identification of microsatellite markers for fragrance in rice by analysis of the rice genome sequence. Molecular Breeding, 9, 245 250.
10. TM soybean in Brazilian soy-derived foods by real-time PCR. International Journal of Food Science and Technology, 43, 1027 1032.
11. Ferrari, C.D., Cibele, D.S., Luciana, L.V. et al. (2007). Evaluation of polymerase chain reaction and DNA isolation protocols for detection of genetically modified soybean. International Journal of Food Science and Technology, 42, 1249 1255.
12. Fitzgerald, M.A., Ruaraidh, S.H.N., Mariafe, N.C., Harrie, A.V. Vito, M.B. (2008). Is there a second gene for fragrance gene in rice? Plant Biotechnology Journal, 6, 416 423.
13. Garland, S.H., Lewin, L., Abedinia, M., Henry, R. Blakeney, A. (1999). The use of microsatellite polymorphisms for the identification of Australian breeding lines of rice (Oryza sativa L.). Euphytica, 108, 53 63.
14. Garland, S.H., Lewin, L., Blakeney, A., Reinke, R. Henry, R. (2000). PCR-based molecular markers for the fragrance gene in rice (Oryza sativa L.). Theoretical and Applied Genetics, 101, 364 371.
15. Hancock, J.M. (1999). Microsatellites and other simple sequences: genomic and mutational mechanisms. In : Microsatellites Evolution and Applications (edited by D.B. Goldstein C. Schlotterrer). Pp. 1 9. New York, USA : Oxford University Press.
16. Ines, L., Hermann, B. Jutta, Z. (2007). Quantitative determination of commercially relevant species in foods by real-time PCR. International Journal of Food Science and Technology, 42, 336 341.
17. Lorieux, M., Petrov, M., Huang, N., Guiderdoni, E. Ghesquiere, A. (1996). Aroma in rice: genetic analysis of a quantitative trait. Theoretical and Applied Genetics, 93, 1145 1151.
18. Olufowote, J.O., Xu, Y., Chen, X. et al. (1997). Comparative evaluation of within-cultivar variation of rice (Oryza sativa L.) using microsatellite and RFLP markers. Genome, 40, 370 378.
19. Oraby, H.A.S., Hassan, A.A. Mossallam, A.A.A. (2005). Screening food products for the presence of CaMV 35S promoter and NOS 3' terminator. Journal of the Science of Food and Agriculture, 85, 1974 1980.
20. Panaud, O., McCouch, S.R Chen, X. (1996). Development of microsatellite markers and characterisation of simple sequence length polymorphism (SSLP) in rice (Oryzasativa L.). Molecular Genetics and Genomics, 252, 597 607.
21. Parichat, T., Siraporn, R., Sasithorn, K., Kunawut, S., Sa-nguansak, T. Suchada, V. (2005). Conference on International Agricultural Research for Development, Stuttgart-Hohenheim, 11-13 October, 2005.
22. Pieter, A.G., Lindy, G., Ashley, P. Nadeem, D. (2005). Isolation and identification of Alicyclobacillus acidocaldarius by 16S rDNA from mango juice and concentrate. International Journal of Food Science and Technology, 40, 789 792.
23. Reinke, R.F., Welsh, L.A., Reece, J.E., Lewin, L.G. Blakeney, A.B. (1991). Procedures for the quality selection of aromatic rice varieties. International Rice Research Newsletter, 16, 10 11.
24. Rutger, J.N., McKenzie, K.S., Moldenhauer, K.A.K. et al. (1998). Rice quality breeding effort since the U.S. Cahiers Options Mediterraneennes 24: Rice quality. Apluridisciplinary approach. [CD-ROMcomputer file] CIHEAM, Paris.
25. Sunita, J., Rajinder, K.J. Susan, R.M. (2004). Genetic analysis of Indian aromatic and quality rice (Oryza sativa L.) germplasm using panels of fluorescently-labeled microsatellite Markers. Theoretical and Applied Genetics, 109, 965 977.
26. Wu, K.S. Tanksley, S.D. (1993). Abundance, polymorphism and genetic mapping of microsatellites in rice. Molecular Genetics and Genomics, 241, 225 235.
27. Yang, G.P., Saghai, M.M, Xu, C.G., Qifa, Z. Biyashev, R.M. (1994). Comparative analysis of microsatellite DNA polymorphism in landraces and cultivars of rice. Molecular Genetics and Genomics, 245, 187 194.
28. Yoshihashi, T. (2002). Quantitative Analysis on 2-Acetyl-1-pyrroline of an aromatic rice by stable isotope dilution method and model studies on its formation during cooking. Journal of Food Science, 67, 619 623.
29. Yoshihashi, T., Huong, N.T.T. Nobuyuki, K. (2005). Quality Evaluation of Khao Dawk Mali 105, an Aromatic Rice Variety of Northeast Thailand, 2005. JIRCAS Working Report No. 30 : 151 160.