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Volumn 9, Issue , 2009, Pages

Rapid identification of bacterial pathogens using a PCR- and microarray-based assay

Author keywords

[No Author keywords available]

Indexed keywords

DNA TOPOISOMERASE; DNA TOPOISOMERASE (ATP HYDROLYSING) B; PENICILLIN BINDING PROTEIN 2A; PRIMER DNA; PROTEIN PARE; SINGLE STRANDED DNA; BACTERIAL DNA; BACTERIAL PROTEIN; DNA TOPOISOMERASE (ATP HYDROLYSING); DNA TOPOISOMERASE IV;

EID: 70349110530     PISSN: 14712180     EISSN: 14712180     Source Type: Journal    
DOI: 10.1186/1471-2180-9-161     Document Type: Article
Times cited : (90)

References (28)
  • 1
    • 0032895051 scopus 로고    scopus 로고
    • Clinical and financial benefits of rapid bacterial identification and antimicrobial susceptibility testing
    • 10203497
    • Clinical and financial benefits of rapid bacterial identification and antimicrobial susceptibility testing. J Barenfanger C Drake G Kacich, J Clin Microbiol 1999 37 1415 1418 10203497
    • (1999) J Clin Microbiol , vol.37 , pp. 1415-1418
    • Barenfanger, J.1    Drake, C.2    Kacich, G.3
  • 2
    • 38349143356 scopus 로고    scopus 로고
    • Rapid identification and antimicrobial susceptibility testing reduce antibiotic use and accelerate pathogen-directed antibiotic use
    • 10.1093/jac/dkm497. 18156278
    • Rapid identification and antimicrobial susceptibility testing reduce antibiotic use and accelerate pathogen-directed antibiotic use. JJ Kerremans P Verboom T Stijnen L Hakkaart-van Roijen W Goessens HA Verbrugh MC Vos, J Antimicrob Chemother 2008 61 428 435 10.1093/jac/dkm497 18156278
    • (2008) J Antimicrob Chemother , vol.61 , pp. 428-435
    • Kerremans, J.J.1    Verboom, P.2    Stijnen, T.3    Hakkaart-Van Roijen, L.4    Goessens, W.5    Verbrugh, H.A.6    Vos, M.C.7
  • 3
    • 2942527326 scopus 로고    scopus 로고
    • Oligonucleotide microarrays in microbial diagnostics
    • 10.1016/j.mib.2004.04.005. 15196491
    • Oligonucleotide microarrays in microbial diagnostics. L Bodrossy A Sessitsch, Curr Opin Microbiol 2004 7 245 254 10.1016/j.mib.2004.04.005 15196491
    • (2004) Curr Opin Microbiol , vol.7 , pp. 245-254
    • Bodrossy, L.1    Sessitsch, A.2
  • 4
    • 4644298072 scopus 로고    scopus 로고
    • Use of an oligonucleotide array for laboratory diagnosis of bacteria responsible for acute upper respiratory infections
    • 10.1128/JCM.42.9.4268-4274.2004. 15365022
    • Use of an oligonucleotide array for laboratory diagnosis of bacteria responsible for acute upper respiratory infections. SB Roth J Jalava O Ruuskanen A Ruohola S Nikkari, J Clin Microbiol 2004 42 4268 4274 10.1128/JCM.42.9.4268- 4274.2004 15365022
    • (2004) J Clin Microbiol , vol.42 , pp. 4268-4274
    • Roth, S.B.1    Jalava, J.2    Ruuskanen, O.3    Ruohola, A.4    Nikkari, S.5
  • 5
    • 34548696115 scopus 로고    scopus 로고
    • 16S rRNA gene sequencing for bacterial identification in the diagnostic laboratory: Pluses, perils, and pitfalls
    • 10.1128/JCM.01228-07. 17626177
    • 16S rRNA gene sequencing for bacterial identification in the diagnostic laboratory: pluses, perils, and pitfalls. JM Janda SL Abbott, J Clin Microbiol 2007 45 2761 2764 10.1128/JCM.01228-07 17626177
    • (2007) J Clin Microbiol , vol.45 , pp. 2761-2764
    • Janda, J.M.1    Abbott, S.L.2
  • 6
    • 0036198891 scopus 로고    scopus 로고
    • Evolution of the gyrB gene and the molecular phylogeny of Enterobacteriaceae: A model molecule for molecular systematic studies
    • 11931166
    • Evolution of the gyrB gene and the molecular phylogeny of Enterobacteriaceae: a model molecule for molecular systematic studies. C Dauga, Int J Syst Evol Microbiol 2002 52 531 547 11931166
    • (2002) Int J Syst Evol Microbiol , vol.52 , pp. 531-547
    • Dauga, C.1
  • 7
    • 41849121236 scopus 로고    scopus 로고
    • Comparative phylogenies of Burkholderia, Ralstonia, Comamonas, Brevundimonas and related organisms derived from rpoB, gyrB and rrs gene sequences
    • 10.1016/j.resmic.2007.12.005. 18280706
    • Comparative phylogenies of Burkholderia, Ralstonia, Comamonas, Brevundimonas and related organisms derived from rpoB, gyrB and rrs gene sequences. LA Tayeb M Lefevre V Passet L Diancourt S Brisse PA Grimont, Res Microbiol 2008 159 169 177 10.1016/j.resmic.2007.12.005 18280706
    • (2008) Res Microbiol , vol.159 , pp. 169-177
    • Tayeb, L.A.1    Lefevre, M.2    Passet, V.3    Diancourt, L.4    Brisse, S.5    Grimont, P.A.6
  • 8
    • 0032031106 scopus 로고    scopus 로고
    • Staphylococcus aureus and coagulase-negative staphylococci from blood stream infections: Frequency of occurrence, antimicrobial susceptibility, and molecular (mecA) characterization of oxacillin resistance in the SCOPE program
    • 10.1016/S0732-8893(97)00212-5. 9572028
    • Staphylococcus aureus and coagulase-negative staphylococci from blood stream infections: frequency of occurrence, antimicrobial susceptibility, and molecular (mecA) characterization of oxacillin resistance in the SCOPE program. SA Marshall WW Wilke MA Pfaller RN Jones, Diagn Microbiol Infect Dis 1998 30 205 214 10.1016/S0732-8893(97)00212-5 9572028
    • (1998) Diagn Microbiol Infect Dis , vol.30 , pp. 205-214
    • Marshall, S.A.1    Wilke, W.W.2    Pfaller, M.A.3    Jones, R.N.4
  • 9
    • 0034038098 scopus 로고    scopus 로고
    • A new class of genetic element, staphylococcus cassette chromosome mec, encodes methicillin resistance in Staphylococcus aureus
    • 10.1128/AAC.44.6.1549-1555.2000. 10817707
    • A new class of genetic element, staphylococcus cassette chromosome mec, encodes methicillin resistance in Staphylococcus aureus. Y Katayama T Ito K Hiramatsu, Antimicrob Agents Chemother 2000 44 1549 1555 10.1128/AAC.44.6.1549- 1555.2000 10817707
    • (2000) Antimicrob Agents Chemother , vol.44 , pp. 1549-1555
    • Katayama, Y.1    Ito, T.2    Hiramatsu, K.3
  • 10
    • 33645067627 scopus 로고    scopus 로고
    • SCCmec in staphylococci: Genes on the move
    • 10.1111/j.1574-695X.2005.00009.x. 16420592
    • SCCmec in staphylococci: genes on the move. AM Hanssen JU Ericson Sollid, FEMS Immunol Med Microbiol 2006 46 8 20 10.1111/j.1574-695X.2005.00009.x 16420592
    • (2006) FEMS Immunol Med Microbiol , vol.46 , pp. 8-20
    • Hanssen, A.M.1    Ericson Sollid, J.U.2
  • 11
    • 22144437663 scopus 로고    scopus 로고
    • Bacterial resistance to antibiotics: Modified target sites
    • 10.1016/j.addr.2005.04.003. 15964098
    • Bacterial resistance to antibiotics: modified target sites. PA Lambert, Adv Drug Deliv Rev 2005 57 1471 1485 10.1016/j.addr.2005.04.003 15964098
    • (2005) Adv Drug Deliv Rev , vol.57 , pp. 1471-1485
    • Lambert, P.A.1
  • 13
    • 32844460198 scopus 로고    scopus 로고
    • Optimized DNA microarray assay allows detection and genotyping of single PCR-amplifiable target copies
    • 10.1016/j.mcp.2005.09.003. 16330186
    • Optimized DNA microarray assay allows detection and genotyping of single PCR-amplifiable target copies. R Ehricht P Slickers S Goellner H Hotzel K Sachse, Mol Cell Probes 2006 20 60 63 10.1016/j.mcp.2005.09.003 16330186
    • (2006) Mol Cell Probes , vol.20 , pp. 60-63
    • Ehricht, R.1    Slickers, P.2    Goellner, S.3    Hotzel, H.4    Sachse, K.5
  • 14
    • 11844271964 scopus 로고    scopus 로고
    • DNA microarray-based detection and identification of Chlamydia and Chlamydophila spp
    • 10.1016/j.mcp.2004.09.005. 15652219
    • DNA microarray-based detection and identification of Chlamydia and Chlamydophila spp. K Sachse H Hotzel P Slickers T Ellinger R Ehricht, Mol Cell Probes 2005 19 41 50 10.1016/j.mcp.2004.09.005 15652219
    • (2005) Mol Cell Probes , vol.19 , pp. 41-50
    • Sachse, K.1    Hotzel, H.2    Slickers, P.3    Ellinger, T.4    Ehricht, R.5
  • 18
    • 0242581339 scopus 로고
    • Generation of single-stranded DNA by the polymerase chain reaction and its application to direct sequencing of the HLA-DQA locus
    • 10.1073/pnas.85.20.7652. 3174659
    • Generation of single-stranded DNA by the polymerase chain reaction and its application to direct sequencing of the HLA-DQA locus. UB Gyllensten HA Erlich, Proc Natl Acad Sci 1988 85 7652 7656 10.1073/pnas.85.20.7652 3174659
    • (1988) Proc Natl Acad Sci , vol.85 , pp. 7652-7656
    • Gyllensten, U.B.1    Erlich, H.A.2
  • 19
    • 0142126812 scopus 로고    scopus 로고
    • Comparison of different methods for preparing single stranded DNA for oligonucleotide microarray
    • Comparison of different methods for preparing single stranded DNA for oligonucleotide microarray. H Gao S Tao D Wang C Zhang X Ma J Cheng Y Zhou, Anal Lett 2003 36 2845 2859
    • (2003) Anal Lett , vol.36 , pp. 2845-2859
    • Gao, H.1    Tao, S.2    Wang, D.3    Zhang, C.4    Ma, X.5    Cheng, J.6    Zhou, Y.7
  • 20
    • 34948830630 scopus 로고    scopus 로고
    • Multiplex asymmetric PCR-based oligonucleotide microarray for detection of drug resistance genes containing single mutations in Enterobacteriaceae
    • 10.1128/AAC.01461-06. 17646412
    • Multiplex asymmetric PCR-based oligonucleotide microarray for detection of drug resistance genes containing single mutations in Enterobacteriaceae. LX Zhu ZW Zhang D Liang D Jiang C Wang N Du Q Zhang K Mitchelson J Cheng, Antimicrob Agents Chemother 2007 51 3707 3713 10.1128/AAC.01461-06 17646412
    • (2007) Antimicrob Agents Chemother , vol.51 , pp. 3707-3713
    • Zhu, L.X.1    Zhang, Z.W.2    Liang, D.3    Jiang, D.4    Wang, C.5    Du, N.6    Zhang, Q.7    Mitchelson, K.8    Cheng, J.9
  • 22
    • 42949113983 scopus 로고    scopus 로고
    • A high-throughput pipeline for designing microarray-based pathogen diagnostic assays
    • 10.1186/1471-2105-9-185. 18402679
    • A high-throughput pipeline for designing microarray-based pathogen diagnostic assays. VR Satya N Zavaljevski K Kumar J Reifman, BMC Bioinformatics 2008 9 185 10.1186/1471-2105-9-185 18402679
    • (2008) BMC Bioinformatics , vol.9 , pp. 185
    • Satya, V.R.1    Zavaljevski, N.2    Kumar, K.3    Reifman, J.4
  • 23
    • 58149492774 scopus 로고    scopus 로고
    • Role of coagulase-negative staphylococci in human disease
    • 10.1016/j.vetmic.2008.09.009. 18986783
    • Role of coagulase-negative staphylococci in human disease. A Piette G Verschraegen, Vet Microbiol 2009 134 45 54 10.1016/j.vetmic.2008.09.009 18986783
    • (2009) Vet Microbiol , vol.134 , pp. 45-54
    • Piette, A.1    Verschraegen, G.2
  • 24
    • 24944479468 scopus 로고    scopus 로고
    • The 39 steps' in gene expression profiling: Critical issues and proposed best practices for microarray experiments
    • 10.1016/S1359-6446(05)03565-8. 16182210
    • The 39 steps' in gene expression profiling: critical issues and proposed best practices for microarray experiments. S Imbeaud C Auffray, Drug Discov Today 2005 10 1175 82 10.1016/S1359-6446(05)03565-8 16182210
    • (2005) Drug Discov Today , vol.10 , pp. 1175-82
    • Imbeaud, S.1    Auffray, C.2
  • 26
    • 0031884398 scopus 로고    scopus 로고
    • Detection of bacterial DNA in joint samples from patients with undifferentiated arthritis and reactive arthritis using polymerase chain reaction with universal 16S ribosomal RNA primers
    • 10.1002/1529-0131(199803)41:3<535::AID-ART203.0.CO;2-4. 9506582
    • Detection of bacterial DNA in joint samples from patients with undifferentiated arthritis and reactive arthritis using polymerase chain reaction with universal 16S ribosomal RNA primers. B Wilbrink IM van der Heijden LM Schouls JDA van Embden JMW Hazes FC Breedveld PP Tak, Arthritis Rheum 1998 41 535 543 10.1002/1529-0131(199803)41:3<535::AID-ART203.0.CO;2-4 9506582
    • (1998) Arthritis Rheum , vol.41 , pp. 535-543
    • Wilbrink, B.1    Der Van, M.H.I.2    Schouls, L.M.3    Van Embden, J.D.A.4    Hazes, J.M.W.5    Breedveld, F.C.6    Tak, P.P.7
  • 27
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • 10.1093/nar/22.22.4673. 7984417
    • CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. JD Thompson DG Higgins TJ Gibson, Nucleic Acids Res 1994 22 4673 4680 10.1093/nar/22.22.4673 7984417
    • (1994) Nucleic Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3


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