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Volumn 36, Issue 13, 2003, Pages 2849-2863

Comparison of Different Methods for Preparing Single Stranded DNA for Oligonucleotide Microarray

Author keywords

Asymmetric PCR; Oligonucleotide microarrays; Single stranded DNA

Indexed keywords

ALKALI; NUCLEIC ACID; OLIGONUCLEOTIDE; REAGENT; SINGLE STRANDED DNA;

EID: 0142126812     PISSN: 00032719     EISSN: None     Source Type: Journal    
DOI: 10.1081/AL-120025260     Document Type: Article
Times cited : (20)

References (26)
  • 3
    • 0037205527 scopus 로고    scopus 로고
    • DNA microarrays for assessing ovarian cancer gene expression
    • Haviv, I.; Campbell, I.G. DNA microarrays for assessing ovarian cancer gene expression. Mol. Cell Endocrinol. 2002, 191, 121-126.
    • (2002) Mol. Cell Endocrinol. , vol.191 , pp. 121-126
    • Haviv, I.1    Campbell, I.G.2
  • 4
    • 0030890466 scopus 로고    scopus 로고
    • Sequence analysis by hybridization with oligonucleotide microchip: Identification of beta-thalassemia mutations
    • Drobyshev, A.; Mologina, N.; Shik, V.; Pobedimskaya, D.; Yershov, G.; Mirzabekov, A. Sequence analysis by hybridization with oligonucleotide microchip: identification of beta-thalassemia mutations. Gene. 1997, 188, 45-52.
    • (1997) Gene , vol.188 , pp. 45-52
    • Drobyshev, A.1    Mologina, N.2    Shik, V.3    Pobedimskaya, D.4    Yershov, G.5    Mirzabekov, A.6
  • 5
    • 0035865925 scopus 로고    scopus 로고
    • Hybridization of single-stranded DNA targets to immobilized complementary DNA probes: Comparison of hairpin versus linear capture probes
    • Riccelli, P.V.; Merante, F.; Leung, K.T.; Bortolin, S.; Zastawny, R.L.; Janeczko, R.; Benight; A.S. Hybridization of single-stranded DNA targets to immobilized complementary DNA probes: comparison of hairpin versus linear capture probes. Nucleic Acids Res. 2001, 29, 996-1004.
    • (2001) Nucleic Acids Res. , vol.29 , pp. 996-1004
    • Riccelli, P.V.1    Merante, F.2    Leung, K.T.3    Bortolin, S.4    Zastawny, R.L.5    Janeczko, R.6    Benight, A.S.7
  • 6
    • 0028618275 scopus 로고
    • Direct fluorescence analysis of genetic polymorphisms by hybridization with oligonucleotide arrays on glass supports
    • Guo, Z.; Guilfoyle, R.A.; Thiel, A.J.; Wang, R.; Smith, L.M. Direct fluorescence analysis of genetic polymorphisms by hybridization with oligonucleotide arrays on glass supports. Nucleic Acids Res. 1994, 22, 5456-5465.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 5456-5465
    • Guo, Z.1    Guilfoyle, R.A.2    Thiel, A.J.3    Wang, R.4    Smith, L.M.5
  • 7
    • 0027400661 scopus 로고
    • A simple method of detecting amplified DNA with immobilized probes on microtiter wells
    • Kawai, S.; Maekawajiri, S.; Yamane, A. A simple method of detecting amplified DNA with immobilized probes on microtiter wells. Anal. Biochem. 1993, 209, 63-69.
    • (1993) Anal. Biochem. , vol.209 , pp. 63-69
    • Kawai, S.1    Maekawajiri, S.2    Yamane, A.3
  • 9
    • 0034663555 scopus 로고    scopus 로고
    • Isolation of single-stranded DNA using denaturing DNA chromatography
    • Dickman, M.; Hornby, D.P. Isolation of single-stranded DNA using denaturing DNA chromatography. Anal. Biochem. 2000, 284, 164-167.
    • (2000) Anal. Biochem. , vol.284 , pp. 164-167
    • Dickman, M.1    Hornby, D.P.2
  • 10
    • 0343096429 scopus 로고
    • Production of single-stranded DNA templates by exonuclease digestion following the polymerase chain reaction
    • Higuchi, R.G.; Ochman, H. Production of single-stranded DNA templates by exonuclease digestion following the polymerase chain reaction. Nucleic Acids Res. 1989, 17, 5865.
    • (1989) Nucleic Acids Res. , vol.17 , pp. 5865
    • Higuchi, R.G.1    Ochman, H.2
  • 11
    • 0025183759 scopus 로고
    • A simple method for generating single-stranded DNA probes labeled to high activities
    • Espelund, M.; Stacy, R.A.; Jakobsen, K.S. A simple method for generating single-stranded DNA probes labeled to high activities. Nucleic Acids Res. 1990, 18, 6157-6158.
    • (1990) Nucleic Acids Res. , vol.18 , pp. 6157-6158
    • Espelund, M.1    Stacy, R.A.2    Jakobsen, K.S.3
  • 12
    • 0033301948 scopus 로고    scopus 로고
    • Oligonucleotide arrays for high resolution HLA typing
    • Guo, Z.; Hood, L.; Petersdorf, E.W. Oligonucleotide arrays for high resolution HLA typing. Rev. Immunogenet. 1999, 1, 220-230.
    • (1999) Rev. Immunogenet. , vol.1 , pp. 220-230
    • Guo, Z.1    Hood, L.2    Petersdorf, E.W.3
  • 13
    • 0242581339 scopus 로고
    • Generation of single-stranded DNA by the polymerase chain reaction and its application to direct sequencing of the HLA-DQA locus
    • Gyllensten, U.B.; Erlich, H.A. Generation of single-stranded DNA by the polymerase chain reaction and its application to direct sequencing of the HLA-DQA locus. Proc. Natl. Acad. Sci. U.S.A. 1988, 85, 7652-7656.
    • (1988) Proc. Natl. Acad. Sci. U.S.A. , vol.85 , pp. 7652-7656
    • Gyllensten, U.B.1    Erlich, H.A.2
  • 14
    • 0035315802 scopus 로고    scopus 로고
    • Detection of mitochondrial single nucleotide polymorphisms using a primer elongation reaction on oligonucleotide microarrays
    • Erdogan, F.; Kirchner, R.; Mann, W.; Ropers, H.H.; Nuber, U.A. Detection of mitochondrial single nucleotide polymorphisms using a primer elongation reaction on oligonucleotide microarrays. Nucleic Acids Res. 2001, 29, E36.
    • (2001) Nucleic Acids Res. , vol.29
    • Erdogan, F.1    Kirchner, R.2    Mann, W.3    Ropers, H.H.4    Nuber, U.A.5
  • 15
    • 0026594623 scopus 로고
    • Efficient production of single-stranded DNA as long as 2 kb for sequencing of PCR-amplified DNA
    • Kaltenboeck, B.; Spatafora, J.W.; Zhang, X.; Kousoulas, K.G.; Blackwell, M.; Storz, J. Efficient production of single-stranded DNA as long as 2 kb for sequencing of PCR-amplified DNA. Biotechniques. 1992, 12, 164-168.
    • (1992) Biotechniques , vol.12 , pp. 164-168
    • Kaltenboeck, B.1    Spatafora, J.W.2    Zhang, X.3    Kousoulas, K.G.4    Blackwell, M.5    Storz, J.6
  • 16
    • 0028233738 scopus 로고
    • A method to increase the sensitivity of mutation specific oligonucleotide hybridization using asymmetric polymerase-chain reaction (PCR)
    • Gorelov, V.N.; Roher, H.D.; Goretzki, P.E. A method to increase the sensitivity of mutation specific oligonucleotide hybridization using asymmetric polymerase-chain reaction (PCR). Biochem. Biophys. Res. Commun. 1994, 200, 365-369.
    • (1994) Biochem. Biophys. Res. Commun. , vol.200 , pp. 365-369
    • Gorelov, V.N.1    Roher, H.D.2    Goretzki, P.E.3
  • 17
    • 0031825827 scopus 로고    scopus 로고
    • The differentiation of Phyrophthora species that are pathogenic on potatoes by an asymmetric PCR combined with single-strand conformation Polymorphism analysis
    • Scott, D,L.; Clark, C.W.; Fyffe, A.E.; Walker, M.D.; Deah, K.L. The differentiation of Phyrophthora species that are pathogenic on potatoes by an asymmetric PCR combined with single-strand conformation Polymorphism analysis. Lett. Appl. Microbiol. 1998, 27, 39-44.
    • (1998) Lett. Appl. Microbiol. , vol.27 , pp. 39-44
    • Scott, D.L.1    Clark, C.W.2    Fyffe, A.E.3    Walker, M.D.4    Deah, K.L.5
  • 18
    • 0036125394 scopus 로고    scopus 로고
    • Oligonucleotide arrays for high-throughput SNPs detection in the MHC class I genes: HLA-B as a model system
    • Guo, Z.; Gatterman, M.S.; Hood, L.; Hansen, J.A.; Petersdorf, E.W. Oligonucleotide arrays for high-throughput SNPs detection in the MHC class I genes: HLA-B as a model system. Genome Res. 2002, 12, 447-457.
    • (2002) Genome Res. , vol.12 , pp. 447-457
    • Guo, Z.1    Gatterman, M.S.2    Hood, L.3    Hansen, J.A.4    Petersdorf, E.W.5
  • 19
    • 0037031130 scopus 로고    scopus 로고
    • Design and evaluation of oligonucleotide-microarray method for the detection of human intestinal bacteria in fecal samples
    • Wang, R.; Beggs, M.; Robertson, L.; Cerniglia, C. Design and evaluation of oligonucleotide-microarray method for the detection of human intestinal bacteria in fecal samples. FEMS Microbiol. Lett. 2002, 213, 175.
    • (2002) FEMS Microbiol. Lett. , vol.213 , pp. 175
    • Wang, R.1    Beggs, M.2    Robertson, L.3    Cerniglia, C.4
  • 20
    • 0035865925 scopus 로고    scopus 로고
    • Hybridization of single-stranded DNA targets to immobilized complementary DNA probes: Comparison of hairpin versus linear capture probes
    • Riccelli, P.V.; Merante, F., Leung, K.T.; Bortolin, S.; Zastawny, R.L.; Janeczko, R.; Benight, A.S. Hybridization of single-stranded DNA targets to immobilized complementary DNA probes: comparison of hairpin versus linear capture probes. Nucleic Acids Res. 2001, 29, 996-1004.
    • (2001) Nucleic Acids Res. , vol.29 , pp. 996-1004
    • Riccelli, P.V.1    Merante, F.2    Leung, K.T.3    Bortolin, S.4    Zastawny, R.L.5    Janeczko, R.6    Benight, A.S.7
  • 21
    • 0028618275 scopus 로고
    • Direct fluorescence analysis of genetic polymorphisms by hybridization with oligonucleotide arrays on glass supports
    • Guo, Z.; Guilfoyle, R.A.; Thiel, A.J.; Wang, R.; Smith, L.M. Direct fluorescence analysis of genetic polymorphisms by hybridization with oligonucleotide arrays on glass supports. Nucleic Acids Res. 1994, 22, 5456-5465.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 5456-5465
    • Guo, Z.1    Guilfoyle, R.A.2    Thiel, A.J.3    Wang, R.4    Smith, L.M.5
  • 22
    • 0027400661 scopus 로고
    • A simple method of detecting amplified DNA with immobilized probes on microtiter wells
    • Kawai, S.; Maekawajiri, S.; Yamane, A. A simple method of detecting amplified DNA with immobilized probes on microtiter wells. Anal. Biochem. 1993, 209, 63-69.
    • (1993) Anal. Biochem. , vol.209 , pp. 63-69
    • Kawai, S.1    Maekawajiri, S.2    Yamane, A.3
  • 23
    • 0028606134 scopus 로고
    • Characterization of the HLA-A polymorphism by locus-specific polymerase chain reaction amplification and oligonucleotide hybridization
    • Gao, X.; Jakobsen, I.B.; Serjeantson, S.W. Characterization of the HLA-A polymorphism by locus-specific polymerase chain reaction amplification and oligonucleotide hybridization. Hum. Immunol. 1994, 41, 267-279.
    • (1994) Hum. Immunol. , vol.41 , pp. 267-279
    • Gao, X.1    Jakobsen, I.B.2    Serjeantson, S.W.3
  • 24
    • 0028939479 scopus 로고
    • Metastable single-strand DNA conformational polymorphism analysis results in enhanced polymorphism detection
    • Kasuga, T.; Cheng, J.; Mitchelson, K.R. Metastable single-strand DNA conformational polymorphism analysis results in enhanced polymorphism detection. PCR Methods Appl. 1995, 4, 227-233.
    • (1995) PCR Methods Appl. , vol.4 , pp. 227-233
    • Kasuga, T.1    Cheng, J.2    Mitchelson, K.R.3
  • 25
    • 0027400661 scopus 로고
    • A simple method of detecting amplified DNA with immobilized probes on microtiter wells
    • Kawai, S.; Maekawajiri, S.; Yamane, A. A simple method of detecting amplified DNA with immobilized probes on microtiter wells. Anal. Biochem. 1993, 209, 63-69.
    • (1993) Anal. Biochem. , vol.209 , pp. 63-69
    • Kawai, S.1    Maekawajiri, S.2    Yamane, A.3
  • 26
    • 0028618275 scopus 로고
    • Direct fluorescence analysis of genetic polymorphisms by hybridization with oligonucleotide arrays on glass supports
    • Guo, Z.; Guilfoyle, R.A.; Thiel, A.J.; Wang, R.; Smith, L.M. Direct fluorescence analysis of genetic polymorphisms by hybridization with oligonucleotide arrays on glass supports. Nucleic Acids Res. 1994, 22, 5456-5465.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 5456-5465
    • Guo, Z.1    Guilfoyle, R.A.2    Thiel, A.J.3    Wang, R.4    Smith, L.M.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.