Genome-wide location analysis reveals a role for Sub1 in RNA polymerase III transcription

Proceedings of the National Academy of Sciences of the United States of America

Volumn 106, Issue 34, 2009, Pages 14265-14270

  Tavenet, Arounie ^a   Suleau, Audrey ^a,c   Dubreuil, Géraldine ^a   Ferrari, Roberto ^b,d   Ducrot, Cécile ^a   Michaut, Magali ^a   Aude, Jean Christophe ^a   Dieci, Giorgio ^b   Lefebvre, Olivier ^a   Conesa, Christine ^a   Acker, Joël ^a  

^a SERVICE DE CHIMIE BIOORGANIQUE ET DE MARQUAGE   (France)

^b UNIVERSITY OF PARMA   (Italy)

^c HENRI MONDOR HOSPITAL   (France)

^d UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

Chip chip; PC4; Reinitiation; TFIIIB

Indexed keywords

DNA DIRECTED RNA POLYMERASE III; FUNGAL PROTEIN; SUB1 PROTEIN; UNCLASSIFIED DRUG;

ARTICLE; CELL GROWTH; GENE LOCATION; GENE MAPPING; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN FUNCTION; PROTEIN INTERACTION; RNA TRANSCRIPTION; TRANSLATION INITIATION;

BLOTTING, FAR-WESTERN; CHROMATIN IMMUNOPRECIPITATION; CHROMOSOME MAPPING; CHROMOSOMES, FUNGAL; DNA, FUNGAL; DNA-BINDING PROTEINS; GENE EXPRESSION REGULATION, DEVELOPMENTAL; GENE EXPRESSION REGULATION, FUNGAL; GENOME, FUNGAL; MUTATION; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PROTEIN BINDING; RNA POLYMERASE III; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEINS; TRANSCRIPTION FACTORS; TRANSCRIPTION FACTORS, TFIII; TRANSCRIPTION, GENETIC;

EID: 70149096882     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.0900162106     Document Type: Article

References (41)

1. Wang JY, Sarker AH, Cooper PK, Volkert MR (2004) The single-strand DNA binding activity of human PC4 prevents mutagenesis and killing by oxidative DNA damage. Mol Cell Biol 24:6084-6093.
2. Ge H, Roeder RG (1994) Purification, cloning, and characterization of a human coactivator, PC4, that mediates transcriptional activation of class II genes. Cell 78:513-523. (Pubitemid 24250814)
3. Pan ZQ, Ge H, Amin AA, Hurwitz J (1996) Transcription-positive cofactor 4 forms complexes with HSSB (RPA) on single-stranded DNA and influences HSSB-dependent enzymatic synthesis of simian virus 40 DNA. J Biol Chem 271:22111-22116. (Pubitemid 26303841)
4. Kretzschmar M, Kaiser K, Lottspeich F, Meisterernst M (1994) A novel mediator of class II gene transcription with homology to viral immediate-early transcriptional regulators. Cell 78:525-534. (Pubitemid 24250815)
5. Malik S, Guermah M, Roeder RG (1998) A dynamic model for PC4 coactivator function in RNA polymerase II transcription. Proc Natl Acad Sci USA 95:2192-2197. (Pubitemid 28145917)
6. Fukuda A, et al. (2004) Transcriptional coactivator PC4 stimulates promoter escape and facilitates transcriptional synergy by GAL4-VP16. Mol Cell Biol 24:6525-6535. (Pubitemid 38891150)
7. Werten S, et al. (1998) Interaction of PC4 with melted DNA inhibits transcription. EMBO J 17:5103-5111. (Pubitemid 28408476)
8. Henry NL, Bushnell DA, Kornberg RD (1996) A yeast transcriptional stimulatory protein similar to human PC4. J Biol Chem 271:21842-21847.
9. Knaus R, Pollock R, Guarente L (1996) Yeast SUB1 is a suppressor of TFIIB mutations and has homology to the human co-activator PC4. EMBO J 15:1933-1940. (Pubitemid 26119226)
10. Calvo O, Manley JL (2005) The transcriptional coactivator PC4/Sub1 has multiple functions in RNA polymerase II transcription. EMBO J 24:1009-1020. (Pubitemid 40470149)
11. Calvo O, Manley JL (2001) Evolutionarily conserved interaction between CstF-64 and PC4 links transcription, polyadenylation, and termination. Mol Cell 7:1013-1023. (Pubitemid 32525748)
12. He X, et al. (2003) Functional interactions between the transcription and mRNA 3′ end processing machineries mediated by Ssu72 and Sub1. Genes Dev 17:1030-1042. (Pubitemid 36459455)
13. Wang Z, Roeder RG (1998) DNA topoisomerase I and PC4 can interact with human TFIIIC to promote both accurate termination and transcription reinitiation by RNA polymerase III. Mol Cell 1:749-757. (Pubitemid 128379252)
14. Das C, et al. (2006) Transcriptional coactivator PC4, a chromatin-associated protein, induces chromatin condensation. Mol Cell Biol 26:8303-8315. (Pubitemid 44748566)
15. Harismendy O, et al. (2003) Genome-wide location of yeast RNA polymerase III transcription machinery. EMBO J 22:4738-4747. (Pubitemid 37162910)
16. Nedea E, et al. (2003) Organization and function of APT, a subcomplex of the yeast cleavage and polyadenylation factor involved in the formation of mRNA and small nucleolar RNA 3′-ends. J Biol Chem 278:33000-33010. (Pubitemid 37055745)
17. Yang PK, et al. (2005) Cotranscriptional recruitment of the pseudouridylsynthetase Cbf5p and of the RNA binding protein Naf1p during H/ACA snoRNP assembly. Mol Cell Biol 25:3295-3304.
18. Mertens C, Roeder RG (2008) Different functional modes of p300 in activation of RNA polymerase III transcription from chromatin templates. Mol Cell Biol 28:5764-5776.
19. Ghavi-Helm Y, et al. (2008) Genome-wide location analysis reveals a role of TFIIS inRNA polymerase III transcription. Genes Dev 22:1934-1947. (Pubitemid 352008641)
20. Radonjic M, et al. (2005) Genome-wide analyses reveal RNA polymerase II located upstream of genes poised for rapid response upon S. cerevisiae stationary phase exit. Mol Cell 18:171-183. (Pubitemid 40503197)
21. Oficjalska-Pham D, et al. (2006) General repression of RNA polymerase III transcription is triggered by protein phosphatase type 2A-mediated dephosphorylation of Maf1. Mol Cell 22:623-632. (Pubitemid 43817597)
22. Abruzzi KC, Lacadie S, Rosbash M (2004) Biochemical analysis of TREX complex recruitment to intronless and intron-containing yeast genes. EMBO J 23:2620-2631. (Pubitemid 38988233)
23. Kassavetis GA, et al. (1992) The role of the TATA-binding protein in the assembly and function of the multisubunit yeast RNA polymerase III transcription factor, TFIIIB. Cell 71:1055-1064.
24. Dieci G, et al. (1993) A novel RNA polymerase III transcription factor fraction that is not required for template commitment. J Biol Chem 268:11199-11207. (Pubitemid 23162312)
25. Ruth J, et al. (1996) A suppressor of mutations in the class III transcription system encodes a component of yeast TFIIIB. EMBO J 15:1941-1949. (Pubitemid 26119227)
26. Ducrot C, et al. (2006) Reconstitution of the yeast RNA polymerase III transcription system with all recombinant factors. J Biol Chem 281:11685-11692. (Pubitemid 43855426)
27. Dieci G, et al. (2009) Positive modulation of RNA polymerase III transcription by ribosomal proteins. Biochem Biophys Res Commun 379:489-493.
28. Ferrari R, Dieci G (2008) The transcription reinitiation properties of RNA polymerase III in the absence of transcription factors. Cell Mol Biol Lett 13:112-118. (Pubitemid 351679949)
29. Andrau JC, Werner M (2001) B″ associated factor (s) involved in RNA polymerase III preinitiation complex formation and start-site selection. Eur J Biochem 268:5167-5175.
30. Chedin S, et al. (1998) The yeast RNA polymerase III transcription machinery: A paradigm for eukaryotic gene activation. Cold Spring Harb Symp Quant Biol 63:381-389. (Pubitemid 29282183)
31. Dieci G, et al. (2000) TFIIIC-independent in vitro transcription of yeast tRNA genes. J Mol Biol 299:601-613. (Pubitemid 30706786)
32. Dieci G, Sentenac A (1996) Facilitated recycling pathway for RNA polymerase III. Cell 84:245-252. (Pubitemid 26040844)
33. Ferrari R, Rivetti C, Acker J, Dieci G (2004) Distinct roles of transcription factors TFIIIB and TFIIIC in RNA polymerase III transcription reinitiation. Proc Natl Acad Sci USA 101:13442-13447. (Pubitemid 39238422)
34. Chaussivert N, Conesa C, Shaaban S, Sentenac A (1995) Complex interactions between yeast TFIIIB and TFIIIC. J Biol Chem 270:15353-15358.
35. Werten S, Moras D (2006) A global transcription cofactor bound to juxtaposed strands of unwound DNA. Nat Struct Mol Biol 13:181-182. (Pubitemid 43214724)
36. Dieci G, Sentenac A (2003) Detours and shortcuts to transcription reinitiation. Trends Biochem Sci 28:202-209.
37. Kumar BR, Swaminathan V, Banerjee S, Kundu TK (2001) p300-mediated acetylation of human transcriptional coactivator PC4 is inhibited by phosphorylation. J Biol Chem 276:16804-16809. (Pubitemid 37411474)
38. Koyama H, et al. (2008) Transcriptional repression of the IMD2 gene mediated by the transcriptional co-activator Sub1. Genes Cells 13.1113-1126.
39. Willy PJ, Kobayashi R, Kadonaga JT (2000) A basal transcription factor that activates or represses transcription. Science 290:982-985. (Pubitemid 30813266)
40. Dasgupta A, et al. (2002) Mot1 activates and represses transcription by direct, ATPase-dependent mechanisms. Proc Natl Acad Sci USA 99:2666-2671. (Pubitemid 34240518)
41. Begley TJ, Rosenbach AS, Ideker T, Samson LD (2002) Damage recovery pathways in Saccharomyces cerevisiae revealed by genomic phenotyping and interactome mapping. Mol Cancer Res 1:103-112. (Pubitemid 36306768)