TFIIIC-independent in vitro transcription of yeast tRNA genes

Journal of Molecular Biology

Volumn 299, Issue 3, 2000, Pages 601-613

  Dieci, Giorgio ^a   Percudani, Riccardo ^a   Giuliodori, Silvia ^a   Bottarelli, Lorena ^a   Ottonello, Simone ^a  

^a UNIVERSITY OF PARMA   (Italy)

Author keywords

TATA box; TFIIIB; TFIIIC; TRNA genes; Yeast

Indexed keywords

CHICKEN OVALBUMIN UPSTREAM PROMOTER TRANSCRIPTION FACTOR; DNA DIRECTED RNA POLYMERASE III; TRANSCRIPTION FACTOR TF3C; TRANSFER RNA; UNCLASSIFIED DRUG;

ARTICLE; BINDING SITE; DNA FLANKING REGION; GENE SEQUENCE; GENETIC TRANSCRIPTION; NONHUMAN; PRIORITY JOURNAL; SACCHAROMYCES CEREVISIAE; TRANSCRIPTION INITIATION; TRANSCRIPTION REGULATION;

EUKARYOTA; FUNGI; GALLUS GALLUS; MYXOGASTRIA; SACCHAROMYCES CEREVISIAE;

EID: 0034625305     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1006/jmbi.2000.3783     Document Type: Article

References (65)

1. Gene size differentially affects the binding of yeast transcription factor tau to two intragenic regions
2. Transcription of a yeast U6 snRNA gene requires a polymerase III promoter element in a novel position
3. A suppressor of TBP mutations encodes an RNA polymerase III transcription factor with homology to TFIIB
4. TFIIIC relieves repression of U6 snRNA transcription by chromatin
5. Basal promoter and enhancer element of yeast U6 snRNA gene
6. Expression in Escherichia coli: Purification and properties of the yeast general transcription factor TFIIID
7. Transcription of the Xenopus laevis selenocysteine tRNA(Ser)Sec gene: A system that combines an internal B box and upstream elements also found in U6 snRNA genes
8. The yeast RNA polymerase III transcription machinery: A paradigm for eukaryotic gene activation
9. Implication of 5'-flanking sequence elements in expression of a plant tRNA(Leu) gene
10. A yeast TFIIB-related factor involved in RNA polymerase III transcription
11. Architecture of protein and DNA contacts within the TFIIIB-DNA complex
12. How does III x II make U6?
13. A subunit of yeast TFIIIC participates in the recruitment of TATA-binding protein
14. Facilitated recycling pathway for RNA polymerase III
15. Selective inactivation of two components of the multiprotein transcription factor TFIIIB in cycloheximide growth-arrested yeast cells
16. Architecture of a yeast U6 RNA gene promoter
17. Comparative mutational analysis of wild-type and stretched tRNA3(Leu) gene promoters
18. Mutational analysis of the transcription start site of the yeast tRNA (Leu3) gene
19. TFIIIB placement on a yeast U6 RNA gene in vivo is directed primarily by TFIIIC rather than by sequence-specific DNA contacts
20. The RNA polymerase III-recruiting factor TFIIIB induces a DNA bend between the TATA box and the transcriptional start site
21. tRNA genes and retroelements in the yeast genome
22. TBP, a universal eukaryotic transcription factor?
23. TATA elements direct bi-directional transcription by RNA polymerases II and III
24. Interactions between yeast TFIIIB components
25. RNA polymerase III and class III transcription factors from Saccharomyces cerevisiae
26. Identical components of yeast transcription factor IIIB are required and sufficient for transcription of TATA box-containing and TATA-less genes
27. Alternative outcomes in assembly of promoter complexes: The roles of TBP and a flexible linker in placing TFIIIB on tRNA genes
28. Lethal mutations in a yeast U6 RNA gene B block promoter element identify essential contacts with transcription factor-IIIC
29. Transcription factor IIIB generates extended DNA interactions in RNA polymerase transcription complexes on tRNA genes
30. S. cerevisiae TFIIIB is the transcription initiation factor proper of RNA polymerase III, while TFIIIA and TFIIIC are assembly factors
31. Formation of open and elongating transcription complexes by RNA polymerase III
32. The role of the TATA binding protein in the assembly and function of the multisubunit yeast RNA polymerase III transcription factor TFIIIB
33. Cloning, expression, and function of TFC5, the gene encoding the B' component of the Saccharomyces cerevisiae RNA polymerase III transcription factor TFIIIB
34. Transcription of xenopus selenocysteine tRNA Ser (formerly designated opal suppressor phosphoserine tRNA) gene is directed by multiple 5'-extragenic regulatory elements
35. Repression and redirection of Saccharomyces cerevisiae tRNA synthesis from upstream of the transcriptional start site
36. The TATA element and its context affect the cooperative interaction of TATA-binding protein with the TFIIB-related factor, TFIIIB70
37. The cloned RNA polymerase II transcription factor IID selects RNA polymerase III to transcribe the human U6 gene in vitro
38. PCF4 encodes an RNA polymerase III transcription factor with homology to TFIIB
39. tRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence
40. Participation of the TATA factor in transcription of the yeast U6 gene by RNA polymerase C. Science
41. Reciprocal interferences between nucleosomal organization and transcriptional activity of the yeast SNR6 gene
42. TATA box-mediated polymerase III transcription in vitro
43. Point mutations 5' to the tRNA selenocysteine TATA box alter RNA polymerase III transcription by affecting the binding of TBP
44. Transcription of a silkworm tRNA(cALA) gene is directed by two AT-rich upstream sequence elements
45. Upstream promoter elements are sufficient for selenocysteine tRNA[Ser]Sec gene transcription and to determine the transcription start point
46. Identification of new eukaryotic tRNA genes in genomic DNA databases by a multi-step weight matrix analysis of transcriptional control regions
47. Transfer RNA gene redundancy and translational selection in Saccharomyces cerevisiae
48. Spatial organization of the core region of yeast TFIIIB-DNA complexes
49. DNA of Saccharomyces cerevisiae
50. Domain organization and functional properties of yeast transcription factor IIIA species with different zinc stoichiometries
51. In vivo modulation of yeast tRNA gene expression by 5'-flanking sequences
52. TFIIIC determines RNA polymerase III specificity at the TATA-containing yeast U6 promoter
53. Cloning and functional characterization of the gene encoding the TFIIIB90 subunit of RNA polymerase III transcription factor TFIIIB
54. A suppressor of mutations in the class III transcription system encodes a component of yeast TFIIIB
55. Variants of the TATA-binding protein can distinguish subsets of RNA polymerase I, II, and III promoters
56. Updated map of duplicated regions in the yeast genome
57. In vitro evidence for growth regulation of tRNA gene transcription in yeast. A role for transcription factor (TF) IIIB70 and TFIIIC
58. Transcription of eukaryotic tRNA genes
59. Yeast and human TFIID with altered DNA-binding specificity for TATA elements
60. Duality of TBP, the universal transcription factor
61. RNA polymerase II/III transcription specifity determined by TATA box orientation
62. The symmetry of the yeast U6 RNA gene's TATA box and the orientation of th TATA-binding protein in yeast TFIIIB
63. Preparation and analysis of low molecular weight RNAs and small ribonucleoproteins
64. TBP-DNA interactions in the mirror groove discriminate between A:T AND T:A base-pairs